Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35830 * 117.00190 * 2 1 4 4 C 1.38857 * 119.90047 * 359.97438 * 3 2 1 5 5 C 1.37748 * 120.17089 * 180.02562 * 4 3 2 6 6 C 1.39945 * 119.97762 * 359.97438 * 5 4 3 7 7 C 1.47010 * 120.09607 * 180.02562 * 6 5 4 8 8 C 1.34979 * 120.00042 * 136.35462 * 7 6 5 9 9 C 1.46260 * 119.99965 * 349.02821 * 8 7 6 10 10 O 1.21718 * 119.99797 * 353.21944 * 9 8 7 11 11 N 1.34774 * 119.99782 * 173.21810 * 9 8 7 12 12 C 1.46498 * 119.99755 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47120 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00409 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00033 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99834 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46835 * 89.99893 * 17 15 13 19 19 H 1.48494 * 109.47022 * 209.99906 * 17 15 13 20 20 H 1.48493 * 109.46894 * 329.99984 * 17 15 13 21 21 C 1.39959 * 119.81249 * 0.28263 * 6 5 4 22 22 C 1.38101 * 119.82115 * 359.46179 * 21 6 5 23 23 O 1.36001 * 119.98794 * 180.25613 * 22 21 6 24 24 H 1.08999 * 109.46564 * 60.00242 * 1 2 3 25 25 H 1.08992 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47008 * 300.00422 * 1 2 3 27 27 H 1.08005 * 119.91833 * 0.02562 * 4 3 2 28 28 H 1.08010 * 120.01259 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.99732 * 316.35178 * 7 6 5 30 30 H 1.08000 * 120.00438 * 169.03447 * 8 7 6 31 31 H 0.97000 * 120.00097 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.47295 * 300.00264 * 12 11 9 33 33 H 1.09005 * 109.47477 * 60.00068 * 12 11 9 34 34 H 0.97006 * 119.99639 * 179.97438 * 16 15 13 35 35 H 1.07996 * 120.09206 * 179.69898 * 21 6 5 36 36 H 0.96693 * 113.99851 * 270.26018 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2875 2.3735 -0.0005 5 6 1.9071 3.6038 -0.0011 6 6 3.3043 3.6830 -0.0005 7 6 3.9682 4.9946 -0.0005 8 6 5.0274 5.2149 0.8066 9 6 5.3676 4.2455 1.8477 10 8 4.6276 3.3046 2.0684 11 7 6.5005 4.3940 2.5625 12 6 6.8415 3.4227 3.6048 13 6 8.1461 3.8146 4.2492 14 1 8.6692 4.6985 3.9154 15 6 8.6720 3.0447 5.2650 16 7 9.8109 3.3865 5.8270 17 14 7.7670 1.5162 5.8429 18 1 8.2225 0.3433 5.0540 19 1 8.0528 1.2861 7.2818 20 1 6.3064 1.7041 5.6521 21 6 4.0677 2.5100 -0.0054 22 6 3.4382 1.2808 0.0005 23 8 4.1768 0.1388 0.0010 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2091 2.3136 -0.0005 28 1 1.3148 4.5070 -0.0011 29 1 3.6085 5.7819 -0.6464 30 1 5.6237 6.1070 0.6839 31 1 7.0900 5.1440 2.3868 32 1 6.0544 3.4074 4.3588 33 1 6.9384 2.4320 3.1607 34 1 10.1807 2.8450 6.5418 35 1 5.1462 2.5659 -0.0100 36 1 4.3905 -0.1917 -0.8822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787629702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = -61.572198 kcal Electronic energy + Delta-G solvation = -20931.220636 eV Core-core repulsion = 17575.099229 eV Total energy + Delta-G solvation = -3356.121407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37133 -39.12647 -37.66699 -36.53598 -34.30976 -33.05223 -32.31816 -29.99187 -29.32643 -27.96587 -27.13571 -23.80548 -22.47345 -22.06825 -20.77430 -19.33760 -18.50677 -17.68455 -16.95297 -16.51056 -15.99060 -15.77765 -15.29566 -14.86119 -14.66991 -14.16821 -14.09752 -13.82403 -13.69148 -13.46890 -12.77051 -12.40600 -12.27319 -12.16182 -11.97044 -11.90522 -11.28026 -11.16644 -10.93675 -10.73711 -10.43801 -9.93228 -9.54992 -9.46814 -9.28598 -8.75334 -8.45938 -7.99546 -7.63619 -6.18898 -4.20942 0.88415 1.44433 1.99971 3.20999 3.30868 3.37362 3.47483 3.79762 3.86138 4.12838 4.30176 4.37302 4.75792 4.87953 4.95534 5.00249 5.16910 5.17418 5.24236 5.30575 5.44464 5.56262 5.70915 5.93784 6.06325 6.25063 6.29494 6.46359 6.67047 6.77880 6.89629 7.11727 7.25081 7.27463 7.43083 7.91421 8.17526 8.55386 8.78138 8.98841 9.41828 10.93002 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.004701 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.177261 B = 5955.233155 C = 6938.277522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.109 3.891 4 C -0.213 4.213 5 C -0.070 4.070 6 C -0.086 4.086 7 C -0.040 4.040 8 C -0.197 4.197 9 C 0.518 3.482 10 O -0.543 6.543 11 N -0.697 5.697 12 C 0.220 3.780 13 C -0.544 4.544 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.893 5.893 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.017 4.017 22 C 0.063 3.937 23 O -0.482 6.482 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.396 0.604 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 0.076 -16.381 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.063 3.937 4 C -0.232 4.232 5 C -0.089 4.089 6 C -0.086 4.086 7 C -0.060 4.060 8 C -0.218 4.218 9 C 0.305 3.695 10 O -0.424 6.424 11 N -0.344 5.344 12 C 0.098 3.902 13 C -0.581 4.581 14 H 0.097 0.903 15 C -0.125 4.125 16 N -0.531 5.531 17 Si 0.702 3.298 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.036 4.036 22 C 0.017 3.983 23 O -0.290 6.290 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.230 0.770 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -17.347 -0.803 -15.403 23.213 hybrid contribution -0.162 -0.234 0.030 0.286 sum -17.509 -1.037 -15.373 23.323 Atomic orbital electron populations 1.23044 0.78915 1.03685 1.01210 1.86100 1.20894 1.26748 1.88536 1.19578 0.91689 0.84594 0.97795 1.20861 0.99513 0.91868 1.10917 1.20912 0.93281 0.96884 0.97796 1.18604 0.92816 0.92667 1.04511 1.22169 0.93212 0.94517 0.96131 1.23224 0.99591 1.01300 0.97664 1.18469 0.82124 0.85841 0.83085 1.90864 1.49995 1.32524 1.68968 1.46199 1.21881 1.29537 1.36822 1.19491 0.96421 0.88323 0.85988 1.21100 1.04739 1.13031 1.19273 0.90275 1.24787 0.94617 0.97605 0.95527 1.69886 1.18600 1.39317 1.25250 0.86829 0.81341 0.83454 0.78175 1.19770 1.20923 1.18497 1.21226 0.99905 0.90005 0.92444 1.17508 0.85964 0.86495 1.08297 1.85006 1.72184 1.39327 1.32449 0.92847 0.88446 0.92681 0.85463 0.85757 0.84963 0.85110 0.77032 0.95696 0.96011 0.92287 0.85278 0.76867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.33 10.27 -33.88 -0.35 -4.68 16 3 C 0.11 1.65 6.71 -38.91 -0.26 1.39 16 4 C -0.21 -2.73 9.01 -39.53 -0.36 -3.09 16 5 C -0.07 -0.90 9.78 -39.12 -0.38 -1.28 16 6 C -0.09 -1.24 4.53 -105.06 -0.48 -1.71 16 7 C -0.04 -0.49 9.80 -37.19 -0.36 -0.86 16 8 C -0.20 -2.72 9.91 -37.52 -0.37 -3.09 16 9 C 0.52 9.95 6.79 -13.04 -0.09 9.86 16 10 O -0.54 -12.26 12.16 5.17 0.06 -12.20 16 11 N -0.70 -14.38 5.54 -62.94 -0.35 -14.73 16 12 C 0.22 5.56 4.50 -5.20 -0.02 5.54 16 13 C -0.54 -15.20 9.83 -34.44 -0.34 -15.54 16 14 H 0.08 2.29 7.84 -52.49 -0.41 1.87 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 17 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 21 C -0.02 -0.28 6.52 -38.99 -0.25 -0.54 16 22 C 0.06 1.04 6.71 -39.19 -0.26 0.78 16 23 O -0.48 -7.86 13.28 -34.42 -0.46 -8.32 16 24 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.13 1.26 6.27 -52.48 -0.33 0.93 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.40 7.15 8.30 -40.82 -0.34 6.81 16 32 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 33 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.13 2.23 7.03 -52.49 -0.37 1.86 16 36 H 0.38 4.00 9.06 45.56 0.41 4.42 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -35.99 311.99 -6.03 -42.01 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.46 Total: 6.99 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.29 Total: -5.14 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.42 Total: -40.88 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.74 Total: -25.19 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.99 -6.03 -42.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.560 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds