Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35830 * 117.00190 * 2 1 4 4 C 1.38857 * 119.90047 * 359.97438 * 3 2 1 5 5 C 1.37748 * 120.17089 * 180.02562 * 4 3 2 6 6 C 1.39945 * 119.97762 * 359.97438 * 5 4 3 7 7 C 1.47010 * 120.09607 * 180.02562 * 6 5 4 8 8 C 1.34979 * 120.00042 * 136.35462 * 7 6 5 9 9 C 1.46260 * 119.99965 * 349.02821 * 8 7 6 10 10 O 1.21718 * 119.99797 * 353.21944 * 9 8 7 11 11 N 1.34774 * 119.99782 * 173.21810 * 9 8 7 12 12 C 1.46498 * 119.99755 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47120 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00409 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00033 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99834 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00096 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46835 * 89.99893 * 17 15 13 19 19 H 1.48494 * 109.47022 * 209.99906 * 17 15 13 20 20 H 1.48493 * 109.46894 * 329.99984 * 17 15 13 21 21 C 1.39959 * 119.81249 * 0.28263 * 6 5 4 22 22 C 1.38101 * 119.82115 * 359.46179 * 21 6 5 23 23 O 1.36001 * 119.98794 * 180.25613 * 22 21 6 24 24 H 1.08999 * 109.46564 * 60.00242 * 1 2 3 25 25 H 1.08992 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47008 * 300.00422 * 1 2 3 27 27 H 1.08005 * 119.91833 * 0.02562 * 4 3 2 28 28 H 1.08010 * 120.01259 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.99732 * 316.35178 * 7 6 5 30 30 H 1.08000 * 120.00438 * 169.03447 * 8 7 6 31 31 H 0.97000 * 120.00097 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.47295 * 300.00264 * 12 11 9 33 33 H 1.09005 * 109.47477 * 60.00068 * 12 11 9 34 34 H 0.97006 * 119.99639 * 179.97438 * 16 15 13 35 35 H 1.07996 * 120.09206 * 179.69898 * 21 6 5 36 36 H 0.96693 * 113.99851 * 270.26018 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2875 2.3735 -0.0005 5 6 1.9071 3.6038 -0.0011 6 6 3.3043 3.6830 -0.0005 7 6 3.9682 4.9946 -0.0005 8 6 5.0274 5.2149 0.8066 9 6 5.3676 4.2455 1.8477 10 8 4.6276 3.3046 2.0684 11 7 6.5005 4.3940 2.5625 12 6 6.8415 3.4227 3.6048 13 6 8.1461 3.8146 4.2492 14 1 8.6692 4.6985 3.9154 15 6 8.6720 3.0447 5.2650 16 7 9.8109 3.3865 5.8270 17 14 7.7670 1.5162 5.8429 18 1 8.2225 0.3433 5.0540 19 1 8.0528 1.2861 7.2818 20 1 6.3064 1.7041 5.6521 21 6 4.0677 2.5100 -0.0054 22 6 3.4382 1.2808 0.0005 23 8 4.1768 0.1388 0.0010 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2091 2.3136 -0.0005 28 1 1.3148 4.5070 -0.0011 29 1 3.6085 5.7819 -0.6464 30 1 5.6237 6.1070 0.6839 31 1 7.0900 5.1440 2.3868 32 1 6.0544 3.4074 4.3588 33 1 6.9384 2.4320 3.1607 34 1 10.1807 2.8450 6.5418 35 1 5.1462 2.5659 -0.0100 36 1 4.3905 -0.1917 -0.8822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787629702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = -89.781471 kcal Electronic energy + Delta-G solvation = -20932.443882 eV Core-core repulsion = 17575.099229 eV Total energy + Delta-G solvation = -3357.344653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45758 -40.52295 -38.76470 -37.70873 -36.11870 -34.40645 -34.16686 -31.09349 -30.64131 -29.54058 -28.08898 -25.26715 -23.69618 -23.47319 -22.26439 -20.74362 -19.71575 -18.93523 -18.52732 -17.74033 -17.37150 -16.98883 -16.71884 -16.22312 -16.12972 -15.64718 -15.32241 -15.01334 -14.93174 -14.78147 -14.44988 -14.04862 -13.89186 -13.36783 -13.03656 -12.95665 -12.88230 -12.74584 -12.20821 -12.08285 -11.97250 -11.67965 -11.54688 -10.94846 -10.75165 -10.56416 -9.92146 -9.47232 -8.71507 -8.43410 -6.49475 -0.19744 0.36883 0.92085 1.28018 1.30382 1.43569 2.24355 2.31115 2.45461 2.62755 2.77098 2.92341 3.26096 3.83404 3.88117 4.07268 4.15544 4.32589 4.37686 4.42061 4.61018 4.65195 4.70908 4.76536 4.93855 5.00521 5.04251 5.20713 5.25768 5.26270 5.45718 5.55473 5.66140 5.78268 6.08989 6.32458 6.51696 6.89224 6.91146 7.14302 7.49073 8.71404 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.004701 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.177261 B = 5955.233155 C = 6938.277522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.096 3.904 4 C -0.209 4.209 5 C -0.065 4.065 6 C -0.106 4.106 7 C -0.009 4.009 8 C -0.216 4.216 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.702 5.702 12 C 0.236 3.764 13 C -0.546 4.546 14 H 0.062 0.938 15 C 0.031 3.969 16 N -0.929 5.929 17 Si 0.933 3.067 18 H -0.268 1.268 19 H -0.269 1.269 20 H -0.267 1.267 21 C -0.038 4.038 22 C 0.031 3.969 23 O -0.507 6.507 24 H 0.075 0.925 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.187 0.813 30 H 0.168 0.832 31 H 0.408 0.592 32 H 0.007 0.993 33 H 0.005 0.995 34 H 0.273 0.727 35 H 0.106 0.894 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.720 1.172 -17.683 26.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.050 3.950 4 C -0.228 4.228 5 C -0.083 4.083 6 C -0.107 4.107 7 C -0.028 4.028 8 C -0.236 4.236 9 C 0.304 3.696 10 O -0.464 6.464 11 N -0.351 5.351 12 C 0.111 3.889 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.170 4.170 16 N -0.568 5.568 17 Si 0.757 3.243 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.192 1.192 21 C -0.057 4.057 22 C -0.014 4.014 23 O -0.317 6.317 24 H 0.093 0.907 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.204 0.796 30 H 0.186 0.814 31 H 0.244 0.756 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -20.018 0.312 -16.737 26.095 hybrid contribution 0.558 -0.616 0.330 0.895 sum -19.460 -0.304 -16.407 25.455 Atomic orbital electron populations 1.23385 0.76379 1.05537 1.02459 1.86064 1.23574 1.26630 1.88465 1.19734 0.91386 0.85873 0.97978 1.21287 1.01094 0.91117 1.09263 1.21381 0.92730 0.98356 0.95792 1.18998 0.93953 0.93023 1.04713 1.22704 0.91017 0.94258 0.94796 1.23168 1.01582 1.01444 0.97437 1.19392 0.80701 0.86102 0.83388 1.90855 1.50975 1.34402 1.70164 1.46041 1.23254 1.29316 1.36510 1.18995 0.94463 0.88771 0.86632 1.21305 1.05507 1.12329 1.19207 0.91999 1.25526 0.95307 1.00340 0.95828 1.69972 1.19918 1.40753 1.26115 0.85925 0.79655 0.80217 0.78468 1.19270 1.19334 1.19173 1.21193 0.99085 0.91241 0.94175 1.17857 0.87192 0.86474 1.09861 1.84922 1.72596 1.39784 1.34444 0.90665 0.86524 0.92164 0.82195 0.81836 0.79611 0.81437 0.75645 0.97478 0.97758 0.91780 0.87570 0.74827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.07 10.27 -77.61 -0.80 -9.87 16 3 C 0.10 2.84 6.71 22.71 0.15 2.99 16 4 C -0.21 -4.79 9.01 22.30 0.20 -4.59 16 5 C -0.06 -1.42 9.78 22.57 0.22 -1.20 16 6 C -0.11 -2.86 4.53 -20.15 -0.09 -2.95 16 7 C -0.01 -0.18 9.80 23.82 0.23 0.06 16 8 C -0.22 -5.42 9.91 23.61 0.23 -5.18 16 9 C 0.51 19.67 6.79 86.33 0.59 20.26 16 10 O -0.58 -26.69 12.16 -4.40 -0.05 -26.74 16 11 N -0.70 -29.33 5.54 -471.24 -2.61 -31.94 16 12 C 0.24 12.21 4.50 85.63 0.38 12.60 16 13 C -0.55 -31.22 9.83 25.60 0.25 -30.97 16 14 H 0.06 3.67 7.84 -2.91 -0.02 3.65 16 15 C 0.03 1.79 5.47 84.66 0.46 2.25 16 16 N -0.93 -56.69 13.96 21.45 0.30 -56.39 16 17 Si 0.93 46.46 27.47 68.60 1.88 48.35 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.27 -13.49 6.54 99.48 0.65 -12.83 16 21 C -0.04 -1.27 6.52 22.65 0.15 -1.13 16 22 C 0.03 1.06 6.71 22.52 0.15 1.22 16 23 O -0.51 -17.48 13.28 -79.53 -1.06 -18.54 16 24 H 0.07 0.83 7.65 -2.39 -0.02 0.82 16 25 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 0.87 7.65 -2.38 -0.02 0.85 16 27 H 0.16 2.49 6.27 -2.91 -0.02 2.47 16 28 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.41 14.77 8.30 -92.71 -0.77 14.00 16 32 H 0.01 0.40 7.20 -2.39 -0.02 0.39 16 33 H 0.00 0.25 7.57 -2.38 -0.02 0.23 16 34 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 35 H 0.11 3.89 7.03 -2.91 -0.02 3.87 16 36 H 0.40 9.13 9.06 -74.06 -0.67 8.45 16 Total: -1.00 -81.12 311.99 1.34 -79.78 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.37 Total: 20.63 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.05 Total: -5.27 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.31 Total: -88.34 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -1.91 Total: -55.15 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.88 Total: 48.35 kcal Total: -81.12 1.34 -79.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.006 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds