Wall clock time and date at job start Mon Mar 30 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46957 * 2 1 4 4 C 1.50695 * 109.47571 * 119.99813 * 2 1 3 5 5 H 1.08000 * 119.99692 * 119.99715 * 4 2 1 6 6 C 1.37873 * 120.00201 * 300.00122 * 4 2 1 7 7 N 1.31511 * 120.00070 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46893 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46769 * 119.99947 * 8 6 4 11 11 H 1.48499 * 109.47405 * 240.00272 * 8 6 4 12 12 N 1.46499 * 109.46900 * 240.00449 * 2 1 3 13 13 S 1.65601 * 120.00334 * 94.99737 * 12 2 1 14 14 O 1.42096 * 104.27550 * 308.93049 * 13 12 2 15 15 O 1.42097 * 104.27967 * 181.06892 * 13 12 2 16 16 C 1.81399 * 104.44938 * 64.99936 * 13 12 2 17 17 C 1.53002 * 109.47162 * 180.02562 * 16 13 12 18 18 H 1.08998 * 109.52325 * 54.99970 * 17 16 13 19 19 C 1.53179 * 109.52177 * 175.12485 * 17 16 13 20 20 C 1.53181 * 109.03697 * 176.88474 * 19 17 16 21 21 C 1.53100 * 109.16042 * 303.02097 * 20 19 17 22 22 O 1.42898 * 109.41521 * 57.60558 * 21 20 19 23 23 C 1.42903 * 114.15649 * 298.87513 * 22 21 20 24 24 H 1.08993 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46838 * 299.99981 * 1 2 3 26 26 H 1.09001 * 109.47352 * 59.99561 * 1 2 3 27 27 H 0.97001 * 120.00355 * 179.97438 * 7 6 4 28 28 H 0.97004 * 119.99597 * 274.99155 * 12 2 1 29 29 H 1.09004 * 109.47089 * 300.00001 * 16 13 12 30 30 H 1.09004 * 109.47568 * 60.00012 * 16 13 12 31 31 H 1.09001 * 109.54178 * 296.75142 * 19 17 16 32 32 H 1.09002 * 109.54230 * 56.93305 * 19 17 16 33 33 H 1.08997 * 109.51857 * 62.92110 * 20 19 17 34 34 H 1.08991 * 109.52223 * 183.11452 * 20 19 17 35 35 H 1.09000 * 109.47666 * 177.59075 * 21 20 19 36 36 H 1.08999 * 109.47749 * 297.62466 * 21 20 19 37 37 H 1.08998 * 109.42834 * 301.11185 * 23 22 21 38 38 H 1.08998 * 109.54117 * 181.07520 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.1468 -2.2869 3.6036 10 1 3.1469 -0.1872 4.8163 11 1 1.1664 -1.5867 4.8161 12 7 2.0182 -0.6905 -1.1962 13 16 2.4120 0.1773 -2.5506 14 8 1.2750 0.9967 -2.7845 15 8 2.8121 -0.8074 -3.4937 16 6 3.8312 1.1873 -2.0442 17 6 4.2932 2.0454 -3.2237 18 1 3.4543 2.6321 -3.5980 19 6 5.4116 2.9863 -2.7651 20 6 5.9189 3.7842 -3.9703 21 6 6.3866 2.8114 -5.0560 22 8 5.3079 1.9454 -5.4147 23 6 4.8223 1.1399 -4.3389 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7091 1.1614 3.4844 28 1 2.1110 -1.6561 -1.1949 29 1 3.5398 1.8344 -1.2167 30 1 4.6458 0.5363 -1.7269 31 1 5.0251 3.6716 -2.0106 32 1 6.2292 2.4022 -2.3426 33 1 5.1132 4.4058 -4.3607 34 1 6.7523 4.4162 -3.6639 35 1 6.7089 3.3730 -5.9329 36 1 7.2190 2.2178 -4.6781 37 1 5.6340 0.5236 -3.9523 38 1 4.0179 0.4981 -4.6983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792751892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:10 Heat of formation + Delta-G solvation = -138.233767 kcal Electronic energy + Delta-G solvation = -20647.526161 eV Core-core repulsion = 17423.524410 eV Total energy + Delta-G solvation = -3224.001751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52797 -36.63753 -35.55507 -35.35598 -34.72055 -32.31612 -32.22413 -28.30680 -27.29319 -25.26335 -25.16500 -22.66525 -20.99927 -20.32048 -18.74013 -17.52494 -16.61992 -16.37229 -16.03667 -15.82168 -15.40084 -15.01937 -14.69465 -14.55229 -13.71332 -13.48416 -13.00188 -12.84070 -12.59104 -12.29926 -12.25991 -11.72055 -11.67816 -11.51949 -11.41439 -11.25622 -11.22206 -11.14256 -11.03751 -10.56720 -10.50598 -10.31400 -10.21397 -10.04753 -9.59633 -9.19094 -8.67342 -8.31061 -6.19750 -4.28859 0.79765 3.18701 3.27361 3.29620 3.41247 3.71791 4.15674 4.30130 4.45086 4.54065 4.66401 4.74718 4.83877 4.94909 5.11710 5.14495 5.27113 5.39813 5.48689 5.55891 5.62836 5.77588 5.82009 5.90494 5.98934 6.14706 6.27532 6.79769 7.04729 7.05381 7.08135 7.53694 7.67157 7.78191 7.99450 8.23019 8.75761 9.38491 10.85662 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.005041 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.576728 B = 5553.257902 C = 6090.758559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.273 3.727 3 H 0.038 0.962 4 C -0.528 4.528 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.103 6.103 13 S 2.606 3.394 14 O -0.959 6.959 15 O -0.979 6.979 16 C -0.629 4.629 17 C -0.112 4.112 18 H 0.092 0.908 19 C -0.110 4.110 20 C -0.158 4.158 21 C 0.055 3.945 22 O -0.376 6.376 23 C 0.041 3.959 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.409 0.591 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 3.928 -9.317 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.168 3.832 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.863 5.863 13 S 2.697 3.303 14 O -0.949 6.949 15 O -0.970 6.970 16 C -0.757 4.757 17 C -0.132 4.132 18 H 0.110 0.890 19 C -0.149 4.149 20 C -0.196 4.196 21 C -0.021 4.021 22 O -0.295 6.295 23 C -0.036 4.036 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.242 0.758 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.010 4.206 -10.184 14.233 hybrid contribution 0.942 -0.553 1.945 2.231 sum 9.952 3.653 -8.238 13.426 Atomic orbital electron populations 1.22222 0.98044 0.99988 1.01499 1.18528 0.91722 0.91827 0.81085 0.94454 1.21356 1.32097 1.13320 0.90030 0.91665 1.24937 0.94801 0.94997 0.99146 1.69889 1.35972 1.22603 1.23910 0.86418 0.78679 0.79602 0.82565 1.19696 1.20938 1.20821 1.55582 1.80982 1.18508 1.31256 1.04911 0.76340 0.75123 0.73877 1.93586 1.45556 1.71282 1.84457 1.93519 1.84743 1.57915 1.60773 1.30687 1.21868 1.14891 1.08269 1.21542 1.00460 0.97431 0.93758 0.88961 1.21604 0.97590 0.98005 0.97673 1.22240 1.02055 0.98841 0.96486 1.22635 0.89210 0.91858 0.98442 1.87959 1.51690 1.55311 1.34508 1.23147 1.00402 0.92287 0.87763 0.94928 0.89126 0.95397 0.92553 0.75781 0.84114 0.84901 0.90677 0.91271 0.90756 0.90633 0.88835 0.93107 0.91981 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.29 37.16 0.35 -3.46 16 2 C 0.27 6.39 2.66 -69.09 -0.18 6.20 16 3 H 0.04 0.90 7.15 -51.93 -0.37 0.53 16 4 C -0.53 -13.28 8.76 -34.44 -0.30 -13.58 16 5 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.67 11.32 55.43 0.63 -23.04 16 8 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -1.10 -21.67 5.35 -5.88 -0.03 -21.70 16 13 S 2.61 46.45 5.03 -107.50 -0.54 45.91 16 14 O -0.96 -20.25 17.11 -57.54 -0.98 -21.23 16 15 O -0.98 -18.26 15.89 -57.54 -0.91 -19.17 16 16 C -0.63 -9.03 5.41 37.16 0.20 -8.83 16 17 C -0.11 -1.49 2.38 -90.48 -0.22 -1.70 16 18 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 19 C -0.11 -1.22 5.31 -26.55 -0.14 -1.36 16 20 C -0.16 -1.50 6.14 -26.59 -0.16 -1.67 16 21 C 0.06 0.55 6.84 37.21 0.25 0.81 16 22 O -0.38 -5.06 10.76 -35.23 -0.38 -5.44 16 23 C 0.04 0.56 5.74 37.21 0.21 0.77 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 26 H 0.03 0.64 7.42 -51.93 -0.39 0.26 16 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.41 7.44 8.79 -34.47 -0.30 7.14 16 29 H 0.14 2.04 7.44 -51.92 -0.39 1.65 16 30 H 0.13 1.67 8.14 -51.92 -0.42 1.24 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.64 5.79 -51.93 -0.30 1.34 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -30.46 314.38 -8.43 -38.88 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.83 Total: 7.43 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -0.09 Total: -21.27 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.60 Total: -44.75 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -2.28 Total: -45.84 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 46.45 SS G_CDS: -0.54 Total: 45.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.46 -8.43 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792751892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.352 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds