Wall clock time and date at job start Mon Mar 30 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46957 * 2 1 4 4 C 1.50695 * 109.47571 * 119.99813 * 2 1 3 5 5 H 1.08000 * 119.99692 * 119.99715 * 4 2 1 6 6 C 1.37873 * 120.00201 * 300.00122 * 4 2 1 7 7 N 1.31511 * 120.00070 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46893 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46769 * 119.99947 * 8 6 4 11 11 H 1.48499 * 109.47405 * 240.00272 * 8 6 4 12 12 N 1.46499 * 109.46900 * 240.00449 * 2 1 3 13 13 S 1.65601 * 120.00334 * 94.99737 * 12 2 1 14 14 O 1.42096 * 104.27550 * 308.93049 * 13 12 2 15 15 O 1.42097 * 104.27967 * 181.06892 * 13 12 2 16 16 C 1.81399 * 104.44938 * 64.99936 * 13 12 2 17 17 C 1.53002 * 109.47162 * 180.02562 * 16 13 12 18 18 H 1.08998 * 109.52325 * 54.99970 * 17 16 13 19 19 C 1.53179 * 109.52177 * 175.12485 * 17 16 13 20 20 C 1.53181 * 109.03697 * 176.88474 * 19 17 16 21 21 C 1.53100 * 109.16042 * 303.02097 * 20 19 17 22 22 O 1.42898 * 109.41521 * 57.60558 * 21 20 19 23 23 C 1.42903 * 114.15649 * 298.87513 * 22 21 20 24 24 H 1.08993 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46838 * 299.99981 * 1 2 3 26 26 H 1.09001 * 109.47352 * 59.99561 * 1 2 3 27 27 H 0.97001 * 120.00355 * 179.97438 * 7 6 4 28 28 H 0.97004 * 119.99597 * 274.99155 * 12 2 1 29 29 H 1.09004 * 109.47089 * 300.00001 * 16 13 12 30 30 H 1.09004 * 109.47568 * 60.00012 * 16 13 12 31 31 H 1.09001 * 109.54178 * 296.75142 * 19 17 16 32 32 H 1.09002 * 109.54230 * 56.93305 * 19 17 16 33 33 H 1.08997 * 109.51857 * 62.92110 * 20 19 17 34 34 H 1.08991 * 109.52223 * 183.11452 * 20 19 17 35 35 H 1.09000 * 109.47666 * 177.59075 * 21 20 19 36 36 H 1.08999 * 109.47749 * 297.62466 * 21 20 19 37 37 H 1.08998 * 109.42834 * 301.11185 * 23 22 21 38 38 H 1.08998 * 109.54117 * 181.07520 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.1468 -2.2869 3.6036 10 1 3.1469 -0.1872 4.8163 11 1 1.1664 -1.5867 4.8161 12 7 2.0182 -0.6905 -1.1962 13 16 2.4120 0.1773 -2.5506 14 8 1.2750 0.9967 -2.7845 15 8 2.8121 -0.8074 -3.4937 16 6 3.8312 1.1873 -2.0442 17 6 4.2932 2.0454 -3.2237 18 1 3.4543 2.6321 -3.5980 19 6 5.4116 2.9863 -2.7651 20 6 5.9189 3.7842 -3.9703 21 6 6.3866 2.8114 -5.0560 22 8 5.3079 1.9454 -5.4147 23 6 4.8223 1.1399 -4.3389 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7091 1.1614 3.4844 28 1 2.1110 -1.6561 -1.1949 29 1 3.5398 1.8344 -1.2167 30 1 4.6458 0.5363 -1.7269 31 1 5.0251 3.6716 -2.0106 32 1 6.2292 2.4022 -2.3426 33 1 5.1132 4.4058 -4.3607 34 1 6.7523 4.4162 -3.6639 35 1 6.7089 3.3730 -5.9329 36 1 7.2190 2.2178 -4.6781 37 1 5.6340 0.5236 -3.9523 38 1 4.0179 0.4981 -4.6983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792751892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:10 Heat of formation + Delta-G solvation = -160.495610 kcal Electronic energy + Delta-G solvation = -20648.491507 eV Core-core repulsion = 17423.524410 eV Total energy + Delta-G solvation = -3224.967097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45953 -38.17314 -37.25835 -36.95130 -35.74065 -34.10905 -33.15741 -30.12027 -28.36574 -27.23090 -26.08137 -23.59706 -22.84246 -21.24383 -20.25051 -19.15220 -18.08133 -17.46170 -17.37621 -17.03262 -16.99353 -16.42733 -15.87759 -15.51890 -15.28244 -14.67041 -14.45235 -14.06054 -13.98205 -13.69893 -13.56037 -13.37544 -13.10640 -12.99443 -12.95974 -12.83680 -12.41605 -12.31768 -12.27375 -12.22960 -12.09613 -11.97885 -11.43920 -11.28891 -10.99983 -10.58399 -10.50495 -10.03820 -8.13548 -6.28573 -0.62541 1.45455 1.49179 1.58950 1.91190 2.44879 2.78197 2.82285 3.16170 3.27206 3.47769 3.61716 3.68376 3.98810 4.12160 4.14628 4.28451 4.45922 4.50632 4.59471 4.64887 4.73581 4.85373 4.92069 4.92574 5.04214 5.11382 5.13674 5.16238 5.31713 5.59735 5.73355 6.01908 6.09435 6.16344 6.43205 6.84010 7.42153 8.91870 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.005041 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.576728 B = 5553.257902 C = 6090.758559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.275 3.725 3 H 0.030 0.970 4 C -0.538 4.538 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.285 1.285 12 N -1.106 6.106 13 S 2.608 3.392 14 O -0.999 6.999 15 O -0.989 6.989 16 C -0.605 4.605 17 C -0.116 4.116 18 H 0.082 0.918 19 C -0.111 4.111 20 C -0.155 4.155 21 C 0.046 3.954 22 O -0.397 6.397 23 C 0.038 3.962 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.414 0.586 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.925 4.029 -9.008 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.578 4.578 5 H 0.089 0.911 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.211 1.211 12 N -0.865 5.865 13 S 2.705 3.295 14 O -0.989 6.989 15 O -0.979 6.979 16 C -0.738 4.738 17 C -0.137 4.137 18 H 0.101 0.899 19 C -0.150 4.150 20 C -0.193 4.193 21 C -0.030 4.030 22 O -0.316 6.316 23 C -0.039 4.039 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.248 0.752 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.274 4.268 -9.899 15.598 hybrid contribution 0.277 -0.539 1.762 1.863 sum 11.550 3.729 -8.137 14.613 Atomic orbital electron populations 1.22159 0.99051 0.99708 1.00443 1.18290 0.91018 0.91689 0.82065 0.95273 1.21651 1.31955 1.13468 0.90704 0.91111 1.25685 0.95001 0.95623 1.01892 1.70003 1.37009 1.23861 1.24513 0.85448 0.77998 0.78685 0.79105 1.18896 1.20610 1.21098 1.55420 1.81740 1.19002 1.30331 1.04710 0.76784 0.74854 0.73195 1.93533 1.48631 1.71791 1.84919 1.93506 1.84900 1.58672 1.60821 1.30453 1.19934 1.14552 1.08820 1.21635 1.01234 0.97658 0.93142 0.89924 1.21660 0.96983 0.97831 0.98493 1.22246 1.02754 0.98716 0.95598 1.22931 0.88585 0.91835 0.99655 1.87932 1.52969 1.55929 1.34769 1.23106 1.00483 0.92461 0.87881 0.94766 0.91063 0.95501 0.92531 0.75172 0.83826 0.82301 0.90357 0.89887 0.91380 0.88040 0.86963 0.91695 0.90366 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 9.29 71.98 0.67 -6.88 16 2 C 0.27 12.88 2.66 44.24 0.12 13.00 16 3 H 0.03 1.42 7.15 -2.38 -0.02 1.40 16 4 C -0.54 -26.67 8.76 25.60 0.22 -26.44 16 5 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -48.98 11.32 21.45 0.24 -48.74 16 8 Si 0.96 40.16 29.54 68.60 2.03 42.18 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 N -1.11 -43.17 5.35 -172.53 -0.92 -44.09 16 13 S 2.61 92.65 5.03 -56.49 -0.28 92.36 16 14 O -1.00 -43.02 17.11 -127.65 -2.18 -45.20 16 15 O -0.99 -36.62 15.89 -127.65 -2.03 -38.65 16 16 C -0.61 -16.43 5.41 71.98 0.39 -16.04 16 17 C -0.12 -2.91 2.38 -10.70 -0.03 -2.93 16 18 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 19 C -0.11 -2.14 5.31 30.71 0.16 -1.98 16 20 C -0.16 -2.50 6.14 30.69 0.19 -2.31 16 21 C 0.05 0.79 6.84 72.02 0.49 1.28 16 22 O -0.40 -10.08 10.76 -148.98 -1.60 -11.68 16 23 C 0.04 0.97 5.74 72.01 0.41 1.39 16 24 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 26 H 0.03 1.26 7.42 -2.39 -0.02 1.25 16 27 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 28 H 0.41 14.91 8.79 -96.74 -0.85 14.06 16 29 H 0.14 3.94 7.44 -2.39 -0.02 3.93 16 30 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 2.66 5.79 -2.39 -0.01 2.65 16 Total: -1.00 -64.29 314.38 -1.47 -65.76 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.20 Total: 27.59 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 3.08 Total: -39.53 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -0.68 Total: -92.83 kcal Atomic # 8 Polarization: -89.72 SS G_CDS: -5.82 Total: -95.54 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 16 Polarization: 92.65 SS G_CDS: -0.28 Total: 92.36 kcal Total: -64.29 -1.47 -65.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792751892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.735 kcal (2) G-P(sol) polarization free energy of solvation -64.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds