Wall clock time and date at job start Mon Mar 30 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20824 * 119.99893 * 2 1 4 4 O 1.34223 * 119.99998 * 179.97438 * 2 1 3 5 5 C 1.45202 * 117.00194 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47397 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47069 * 65.00846 * 6 5 4 8 8 C 1.34771 * 120.00159 * 180.02562 * 7 6 5 9 9 O 1.21542 * 120.00150 * 359.97438 * 8 7 6 10 10 C 1.47883 * 119.99963 * 179.97438 * 8 7 6 11 11 C 1.39921 * 120.02735 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35998 * 180.02562 * 11 10 8 13 13 C 1.37757 * 120.41590 * 359.95668 * 12 11 10 14 14 C 1.40753 * 120.03343 * 0.04137 * 13 12 11 15 15 C 1.41437 * 120.17299 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00158 * 24.40208 * 15 14 13 17 17 C 1.39938 * 119.99677 * 204.40514 * 15 14 13 18 18 N 1.30830 * 120.00373 * 17.84341 * 17 15 14 19 19 Si 1.86800 * 119.99826 * 197.84001 * 17 15 14 20 20 H 1.48499 * 109.47256 * 90.00093 * 19 17 15 21 21 H 1.48503 * 109.47083 * 209.99943 * 19 17 15 22 22 H 1.48503 * 109.47336 * 329.99944 * 19 17 15 23 23 C 1.38994 * 120.02809 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47395 * 300.00440 * 1 2 3 26 26 H 1.08997 * 109.46998 * 60.00625 * 1 2 3 27 27 H 1.09008 * 109.46900 * 60.00620 * 5 4 2 28 28 H 1.09004 * 109.47422 * 300.00790 * 5 4 2 29 29 H 1.08990 * 109.47339 * 305.00284 * 6 5 4 30 30 H 1.08999 * 109.47114 * 185.00024 * 6 5 4 31 31 H 0.97004 * 120.00124 * 359.97438 * 7 6 5 32 32 H 1.07995 * 119.81848 * 0.02562 * 11 10 8 33 33 H 1.08007 * 119.79465 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.98441 * 179.97438 * 13 12 11 35 35 H 0.96995 * 119.99719 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.20043 * 359.70405 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1624 0.0005 5 6 3.6281 -1.0865 -0.0001 6 6 4.2129 -2.5002 0.0000 7 7 3.8598 -3.1748 -1.2516 8 6 4.2696 -4.4392 -1.4745 9 8 4.9325 -5.0198 -0.6374 10 6 3.9126 -5.1203 -2.7377 11 6 3.1491 -4.4527 -3.7016 12 6 2.8108 -5.0834 -4.8854 13 6 3.2222 -6.3753 -5.1296 14 6 3.9910 -7.0628 -4.1718 15 6 4.4145 -8.3894 -4.4193 16 1 4.5098 -8.7453 -5.4345 17 6 4.7099 -9.2407 -3.3487 18 7 4.2763 -8.9561 -2.1476 19 14 5.7234 -10.7836 -3.6345 20 1 7.1640 -10.4693 -3.4585 21 1 5.3217 -11.8277 -2.6578 22 1 5.4901 -11.2806 -5.0143 23 6 4.3354 -6.4242 -2.9685 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 3.9644 -0.5538 0.8895 28 1 3.9638 -0.5548 -0.8905 29 1 3.8075 -3.0611 0.8420 30 1 5.2978 -2.4447 0.0891 31 1 3.3304 -2.7117 -1.9196 32 1 2.8220 -3.4396 -3.5204 33 1 2.2207 -4.5597 -5.6229 34 1 2.9538 -6.8611 -6.0560 35 1 4.4814 -9.5460 -1.4055 36 1 4.9290 -6.9417 -2.2293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798136109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:32 Heat of formation + Delta-G solvation = -113.532250 kcal Electronic energy + Delta-G solvation = -20448.754095 eV Core-core repulsion = 17090.379531 eV Total energy + Delta-G solvation = -3358.374564 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62219 -39.18663 -37.18018 -36.73596 -34.45206 -33.71633 -31.14478 -30.33083 -29.46304 -28.84345 -25.33514 -23.65593 -22.05113 -21.31014 -20.89480 -19.61661 -17.89544 -17.80931 -16.87259 -16.58713 -15.89254 -15.53858 -15.03314 -14.77802 -14.60037 -13.95033 -13.67205 -13.31702 -13.18334 -13.01956 -12.68899 -12.58660 -12.47290 -12.39751 -11.81766 -11.63856 -11.18112 -11.09911 -10.90358 -10.76060 -10.72224 -10.50358 -10.03448 -9.69922 -9.22649 -9.05418 -8.72836 -7.64183 -7.53141 -6.80836 -4.42207 1.95962 2.19588 2.48519 2.80855 3.07485 3.10655 3.15283 3.61588 3.85391 3.91580 4.44374 4.62420 4.65519 4.88333 4.91830 5.00111 5.11075 5.39489 5.55241 5.59213 5.68776 5.88419 6.07883 6.22720 6.26695 6.70864 6.77955 6.97785 7.00641 7.20400 7.37185 7.51299 7.68961 7.74323 7.91421 8.06459 8.17786 8.49715 8.79358 8.82522 8.91723 10.13857 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029415 B = 0.003594 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.656114 B = 7789.376086 C = 8334.955358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.460 3.540 3 O -0.520 6.520 4 O -0.351 6.351 5 C 0.056 3.944 6 C 0.123 3.877 7 N -0.736 5.736 8 C 0.565 3.435 9 O -0.546 6.546 10 C -0.128 4.128 11 C -0.218 4.218 12 C -0.097 4.097 13 C -0.212 4.212 14 C 0.099 3.901 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.092 4.092 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.401 0.599 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 12.256 3.690 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.304 3.696 3 O -0.409 6.409 4 O -0.268 6.268 5 C -0.018 4.018 6 C -0.001 4.001 7 N -0.391 5.391 8 C 0.356 3.644 9 O -0.424 6.424 10 C -0.131 4.131 11 C -0.238 4.238 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.112 4.112 24 H 0.112 0.888 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.237 0.763 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.255 12.029 4.568 13.552 hybrid contribution 0.172 -0.292 -0.327 0.471 sum -4.083 11.737 4.241 13.131 Atomic orbital electron populations 1.21600 0.87101 1.06087 1.05714 1.23882 0.92239 0.81551 0.71903 1.90689 1.70985 1.33221 1.45975 1.86604 1.22076 1.34666 1.83461 1.23404 0.76556 0.98241 1.03641 1.21320 0.99874 0.90026 0.88871 1.45905 1.57674 1.15508 1.19967 1.18846 0.78116 0.80126 0.87338 1.90697 1.39420 1.65313 1.47018 1.19452 1.04224 0.96158 0.93306 1.20331 1.08388 0.98692 0.96370 1.20432 0.99870 0.95222 0.96057 1.21101 1.04905 0.95834 1.01345 1.17601 0.88999 0.92977 0.90823 1.19602 1.39530 0.95642 0.94118 0.90049 1.25970 0.94069 1.00037 0.94536 1.69793 1.33334 1.36542 1.01017 0.86264 0.80625 0.80231 0.79354 1.19145 1.20221 1.18584 1.21635 0.99526 0.91179 0.98832 0.88778 0.87812 0.87677 0.89596 0.90322 0.90488 0.89381 0.76319 0.89302 0.88912 0.88610 0.90423 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.42 36.00 0.38 -0.56 16 2 C 0.46 4.89 8.06 36.00 0.29 5.18 16 3 O -0.52 -7.04 16.85 -18.75 -0.32 -7.36 16 4 O -0.35 -4.06 10.17 -39.24 -0.40 -4.46 16 5 C 0.06 0.60 5.60 37.15 0.21 0.81 16 6 C 0.12 1.63 6.07 -4.04 -0.02 1.60 16 7 N -0.74 -12.05 5.46 -61.25 -0.33 -12.38 16 8 C 0.56 12.27 7.77 -12.31 -0.10 12.17 16 9 O -0.55 -13.56 16.33 5.33 0.09 -13.48 16 10 C -0.13 -3.02 5.87 -105.04 -0.62 -3.63 16 11 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 12 C -0.10 -2.07 10.01 -39.73 -0.40 -2.46 16 13 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 14 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 15 C -0.46 -12.03 9.05 -37.73 -0.34 -12.37 16 16 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.78 -20.65 10.96 55.55 0.61 -20.04 16 19 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.09 -2.43 8.23 -38.44 -0.32 -2.75 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.81 8.13 -51.92 -0.42 0.38 16 28 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.40 5.86 6.49 -40.82 -0.26 5.60 16 32 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 33 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 36 H 0.13 3.84 5.75 -52.48 -0.30 3.54 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -31.85 319.70 -7.18 -39.02 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.25 Total: 8.77 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.35 Total: -8.57 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.27 Total: -32.42 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.63 Total: -25.29 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.85 -7.18 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798136109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.508 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds