Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46698 * 102.19262 * 3 2 1 5 5 C 1.36941 * 119.99884 * 263.90909 * 4 3 2 6 6 H 1.07995 * 120.00247 * 199.38440 * 5 4 3 7 7 C 1.38816 * 119.99634 * 19.38032 * 5 4 3 8 8 N 1.31621 * 120.00289 * 22.29632 * 7 5 4 9 9 Si 1.86805 * 119.99958 * 202.28836 * 7 5 4 10 10 H 1.48496 * 109.46663 * 60.00230 * 9 7 5 11 11 H 1.48495 * 109.46985 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47022 * 300.00233 * 9 7 5 13 13 C 1.46493 * 120.00456 * 83.91305 * 4 3 2 14 14 C 1.50701 * 109.47120 * 89.99671 * 13 4 3 15 15 C 1.35168 * 125.61355 * 90.00143 * 14 13 4 16 16 C 1.40307 * 107.12988 * 180.02562 * 15 14 13 17 17 C 1.36637 * 106.70070 * 0.02562 * 16 15 14 18 18 C 1.46471 * 125.99357 * 179.97438 * 17 16 15 19 19 O 1.21627 * 120.00066 * 0.02562 * 18 17 16 20 20 O 1.34896 * 120.00124 * 180.02562 * 18 17 16 21 21 C 1.45203 * 117.00101 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46969 * 180.02562 * 21 20 18 23 23 O 1.33916 * 125.60556 * 270.32480 * 14 13 4 24 24 H 4.40638 * 5.51461 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47071 * 342.18882 * 3 2 1 26 26 H 1.09001 * 109.46580 * 222.18723 * 3 2 1 27 27 H 0.96997 * 120.00261 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.46933 * 329.99659 * 13 4 3 29 29 H 1.08998 * 109.47580 * 209.99811 * 13 4 3 30 30 H 1.08001 * 126.43144 * 0.02562 * 15 14 13 31 31 H 1.08001 * 126.64452 * 179.97438 * 16 15 14 32 32 H 1.09001 * 109.46677 * 299.99597 * 21 20 18 33 33 H 1.08994 * 109.47113 * 60.00012 * 21 20 18 34 34 H 1.09001 * 109.46841 * 180.02562 * 22 21 20 35 35 H 1.09001 * 109.46760 * 299.99140 * 22 21 20 36 36 H 1.08994 * 109.47525 * 59.99858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.2926 -1.3501 5 6 3.4814 -0.7324 -2.1892 6 1 4.1196 -0.5418 -3.0393 7 6 3.0131 -2.0166 -1.9469 8 7 1.9287 -2.1960 -1.2229 9 14 3.9220 -3.4900 -2.6486 10 1 5.3113 -3.5100 -2.1247 11 1 3.2239 -4.7383 -2.2493 12 1 3.9529 -3.3930 -4.1301 13 6 3.2508 1.6810 -1.8026 14 6 4.6228 2.2055 -1.4657 15 6 5.7117 2.1310 -2.2631 16 6 6.7726 2.7347 -1.5713 17 6 6.2715 3.1522 -0.3707 18 6 7.0218 3.8385 0.6835 19 8 8.2027 4.0845 0.5278 20 8 6.4032 4.1977 1.8272 21 6 7.2086 4.8748 2.8278 22 6 6.3414 5.2004 4.0455 23 8 4.9652 2.8168 -0.3244 24 1 -1.0501 0.0002 0.0001 25 1 3.0098 -0.9776 0.3143 26 1 3.0089 0.7623 0.6902 27 1 1.6017 -3.0933 -1.0533 28 1 2.4965 2.2901 -1.3045 29 1 3.0995 1.7256 -2.8811 30 1 5.7566 1.6896 -3.2478 31 1 7.7886 2.8468 -1.9199 32 1 8.0314 4.2273 3.1308 33 1 7.6082 5.7981 2.4085 34 1 6.9460 5.7091 4.7965 35 1 5.5184 5.8478 3.7428 36 1 5.9421 4.2769 4.4647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = 12.062432 kcal Electronic energy + Delta-G solvation = -20861.127331 eV Core-core repulsion = 17508.198961 eV Total energy + Delta-G solvation = -3352.928370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.30012 -40.11535 -36.64835 -36.27218 -32.83726 -32.07745 -31.74484 -31.63789 -29.66052 -26.79807 -25.98622 -23.94765 -22.52820 -21.76207 -20.99251 -20.06381 -18.26180 -17.53215 -16.95215 -16.76916 -16.46485 -15.78896 -15.11407 -14.82657 -14.05478 -13.84287 -13.64151 -13.61125 -13.18348 -13.08546 -12.71501 -12.60479 -12.24158 -12.08411 -11.75990 -11.64669 -11.36351 -10.99541 -10.82435 -10.75208 -10.64702 -10.38189 -10.12926 -9.69833 -9.05304 -8.93506 -8.56041 -8.21099 -7.22669 -5.92250 -3.38173 1.10308 2.42829 2.63699 3.12259 3.25687 3.33322 3.39134 3.40861 4.10377 4.31706 4.44491 4.76060 4.77273 4.85864 5.09475 5.15419 5.21217 5.31942 5.50420 5.51181 5.61237 5.76204 5.79982 5.88389 5.91061 6.18096 6.19998 6.31309 6.35733 6.62760 6.72009 7.08825 7.29306 7.32444 7.63736 7.76733 8.10932 8.93507 9.11266 9.58514 10.02897 11.10505 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.004645 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.541980 B = 6026.485524 C = 6751.215826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.099 4.099 3 C 0.265 3.735 4 N -0.569 5.569 5 C -0.282 4.282 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.208 3.792 14 C 0.056 3.944 15 C -0.231 4.231 16 C -0.094 4.094 17 C -0.102 4.102 18 C 0.559 3.441 19 O -0.503 6.503 20 O -0.348 6.348 21 C 0.062 3.938 22 C -0.153 4.153 23 O -0.150 6.150 24 H 0.192 0.808 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 11.796 5.054 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.102 4.102 3 C 0.140 3.860 4 N -0.287 5.287 5 C -0.410 4.410 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.521 5.521 9 Si 0.731 3.269 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.079 3.921 14 C -0.002 4.002 15 C -0.251 4.251 16 C -0.114 4.114 17 C -0.152 4.152 18 C 0.406 3.594 19 O -0.394 6.394 20 O -0.264 6.264 21 C -0.011 4.011 22 C -0.210 4.210 23 O -0.045 6.045 24 H 0.209 0.791 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.174 0.826 31 H 0.173 0.827 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.252 11.743 5.363 14.344 hybrid contribution 0.503 -1.038 -0.507 1.259 sum 6.755 10.706 4.857 13.558 Atomic orbital electron populations 1.24187 0.95324 1.07202 1.04316 1.24039 0.95081 0.94653 0.96414 1.17777 0.83116 1.00062 0.85011 1.44052 1.73445 0.99482 1.11731 1.19134 1.25732 0.86849 1.09283 0.90423 1.24950 0.95800 0.98341 0.99629 1.70137 1.18921 1.21367 1.41682 0.86392 0.79690 0.82059 0.78800 1.20820 1.21579 1.20727 1.19575 0.85947 0.86755 0.99844 1.25469 1.01046 0.91416 0.82239 1.21576 0.91804 1.08327 1.03395 1.21903 1.00593 0.96944 0.91962 1.20465 0.84256 1.13335 0.97190 1.19231 0.84504 0.75465 0.80221 1.90898 1.15207 1.53384 1.79876 1.86697 1.43529 1.69995 1.26217 1.23065 0.93941 0.96744 0.87395 1.21811 1.00646 1.02988 0.95568 1.84163 1.24178 1.58556 1.37595 0.79087 0.88779 0.94004 0.93191 0.91776 0.88731 0.82648 0.82655 0.91074 0.91131 0.90224 0.91355 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.41 19.25 29.55 0.57 -5.84 16 2 C -0.10 -2.34 11.50 -37.12 -0.43 -2.77 16 3 C 0.27 6.15 5.41 -6.82 -0.04 6.11 16 4 N -0.57 -13.19 2.47 -177.95 -0.44 -13.63 16 5 C -0.28 -7.12 9.63 -15.06 -0.14 -7.27 16 6 H 0.08 1.90 7.92 -52.49 -0.42 1.48 16 7 C 0.01 0.35 4.82 -17.43 -0.08 0.27 16 8 N -0.88 -24.03 9.61 55.49 0.53 -23.50 16 9 Si 0.90 20.74 29.61 -169.99 -5.03 15.71 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.21 3.95 6.20 -5.20 -0.03 3.92 16 14 C 0.06 1.01 6.89 -35.40 -0.24 0.77 16 15 C -0.23 -3.86 10.77 -39.90 -0.43 -4.29 16 16 C -0.09 -1.52 10.62 -39.38 -0.42 -1.93 16 17 C -0.10 -1.78 7.18 -36.85 -0.26 -2.04 16 18 C 0.56 9.20 7.93 34.05 0.27 9.47 16 19 O -0.50 -8.67 16.66 -19.36 -0.32 -9.00 16 20 O -0.35 -5.19 10.23 -42.47 -0.43 -5.62 16 21 C 0.06 0.68 6.20 37.16 0.23 0.91 16 22 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 23 O -0.15 -2.79 10.67 4.73 0.05 -2.74 16 24 H 0.19 3.50 7.80 -54.09 -0.42 3.08 16 25 H 0.09 2.38 6.59 -51.93 -0.34 2.04 16 26 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.06 1.15 8.07 -51.93 -0.42 0.74 16 29 H 0.09 1.67 8.04 -51.93 -0.42 1.26 16 30 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -29.77 328.94 -5.85 -35.62 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.53 Total: 1.77 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.63 Total: -3.57 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.09 Total: -37.13 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.71 Total: -17.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.77 -5.85 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.687 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds