Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46698 * 102.19262 * 3 2 1 5 5 C 1.36941 * 119.99884 * 263.90909 * 4 3 2 6 6 H 1.07995 * 120.00247 * 199.38440 * 5 4 3 7 7 C 1.38816 * 119.99634 * 19.38032 * 5 4 3 8 8 N 1.31621 * 120.00289 * 22.29632 * 7 5 4 9 9 Si 1.86805 * 119.99958 * 202.28836 * 7 5 4 10 10 H 1.48496 * 109.46663 * 60.00230 * 9 7 5 11 11 H 1.48495 * 109.46985 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47022 * 300.00233 * 9 7 5 13 13 C 1.46493 * 120.00456 * 83.91305 * 4 3 2 14 14 C 1.50701 * 109.47120 * 89.99671 * 13 4 3 15 15 C 1.35168 * 125.61355 * 90.00143 * 14 13 4 16 16 C 1.40307 * 107.12988 * 180.02562 * 15 14 13 17 17 C 1.36637 * 106.70070 * 0.02562 * 16 15 14 18 18 C 1.46471 * 125.99357 * 179.97438 * 17 16 15 19 19 O 1.21627 * 120.00066 * 0.02562 * 18 17 16 20 20 O 1.34896 * 120.00124 * 180.02562 * 18 17 16 21 21 C 1.45203 * 117.00101 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46969 * 180.02562 * 21 20 18 23 23 O 1.33916 * 125.60556 * 270.32480 * 14 13 4 24 24 H 4.40638 * 5.51461 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47071 * 342.18882 * 3 2 1 26 26 H 1.09001 * 109.46580 * 222.18723 * 3 2 1 27 27 H 0.96997 * 120.00261 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.46933 * 329.99659 * 13 4 3 29 29 H 1.08998 * 109.47580 * 209.99811 * 13 4 3 30 30 H 1.08001 * 126.43144 * 0.02562 * 15 14 13 31 31 H 1.08001 * 126.64452 * 179.97438 * 16 15 14 32 32 H 1.09001 * 109.46677 * 299.99597 * 21 20 18 33 33 H 1.08994 * 109.47113 * 60.00012 * 21 20 18 34 34 H 1.09001 * 109.46841 * 180.02562 * 22 21 20 35 35 H 1.09001 * 109.46760 * 299.99140 * 22 21 20 36 36 H 1.08994 * 109.47525 * 59.99858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.2926 -1.3501 5 6 3.4814 -0.7324 -2.1892 6 1 4.1196 -0.5418 -3.0393 7 6 3.0131 -2.0166 -1.9469 8 7 1.9287 -2.1960 -1.2229 9 14 3.9220 -3.4900 -2.6486 10 1 5.3113 -3.5100 -2.1247 11 1 3.2239 -4.7383 -2.2493 12 1 3.9529 -3.3930 -4.1301 13 6 3.2508 1.6810 -1.8026 14 6 4.6228 2.2055 -1.4657 15 6 5.7117 2.1310 -2.2631 16 6 6.7726 2.7347 -1.5713 17 6 6.2715 3.1522 -0.3707 18 6 7.0218 3.8385 0.6835 19 8 8.2027 4.0845 0.5278 20 8 6.4032 4.1977 1.8272 21 6 7.2086 4.8748 2.8278 22 6 6.3414 5.2004 4.0455 23 8 4.9652 2.8168 -0.3244 24 1 -1.0501 0.0002 0.0001 25 1 3.0098 -0.9776 0.3143 26 1 3.0089 0.7623 0.6902 27 1 1.6017 -3.0933 -1.0533 28 1 2.4965 2.2901 -1.3045 29 1 3.0995 1.7256 -2.8811 30 1 5.7566 1.6896 -3.2478 31 1 7.7886 2.8468 -1.9199 32 1 8.0314 4.2273 3.1308 33 1 7.6082 5.7981 2.4085 34 1 6.9460 5.7091 4.7965 35 1 5.5184 5.8478 3.7428 36 1 5.9421 4.2769 4.4647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -2.857248 kcal Electronic energy + Delta-G solvation = -20861.774297 eV Core-core repulsion = 17508.198961 eV Total energy + Delta-G solvation = -3353.575336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.66068 -41.32296 -38.03542 -37.81535 -34.24076 -33.65419 -33.40839 -32.72274 -31.16941 -28.33465 -27.79398 -25.17137 -23.81202 -23.10799 -22.40854 -21.40030 -19.54033 -19.31941 -18.34354 -18.02479 -17.95075 -17.23521 -16.71282 -16.32180 -15.53414 -15.43580 -15.00583 -14.91932 -14.69236 -14.22796 -13.91718 -13.80058 -13.58461 -13.46619 -13.16411 -13.01605 -12.68932 -12.57057 -12.48669 -12.25373 -12.03482 -11.99355 -11.59916 -11.02293 -10.82773 -10.78770 -10.37209 -9.62099 -9.06800 -7.86352 -5.32606 -0.21803 1.22991 1.30577 1.49762 1.53822 1.58618 1.82717 2.00165 2.34639 2.52058 2.59278 3.26752 3.62483 3.78603 3.91647 3.94657 3.99257 4.03586 4.09662 4.31191 4.46089 4.56707 4.73326 4.75144 4.88933 4.90493 4.91844 4.96804 5.04513 5.21250 5.31268 5.41754 5.61943 5.68069 5.94679 6.22649 6.52587 7.02631 7.34749 7.72500 8.15678 9.14709 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.004645 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.541980 B = 6026.485524 C = 6751.215826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.138 4.138 3 C 0.271 3.729 4 N -0.584 5.584 5 C -0.280 4.280 6 H 0.085 0.915 7 C -0.035 4.035 8 N -0.907 5.907 9 Si 0.958 3.042 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.274 1.274 13 C 0.211 3.789 14 C 0.039 3.961 15 C -0.224 4.224 16 C -0.089 4.089 17 C -0.115 4.115 18 C 0.561 3.439 19 O -0.514 6.514 20 O -0.358 6.358 21 C 0.052 3.948 22 C -0.148 4.148 23 O -0.165 6.165 24 H 0.225 0.775 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.248 0.752 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.173 0.827 31 H 0.179 0.821 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 12.765 4.830 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.141 4.141 3 C 0.146 3.854 4 N -0.303 5.303 5 C -0.409 4.409 6 H 0.103 0.897 7 C -0.233 4.233 8 N -0.550 5.550 9 Si 0.787 3.213 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.200 1.200 13 C 0.084 3.916 14 C -0.018 4.018 15 C -0.243 4.243 16 C -0.109 4.109 17 C -0.165 4.165 18 C 0.408 3.592 19 O -0.406 6.406 20 O -0.275 6.275 21 C -0.021 4.021 22 C -0.205 4.205 23 O -0.060 6.060 24 H 0.241 0.759 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.190 0.810 31 H 0.197 0.803 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.009 12.751 5.133 15.429 hybrid contribution 0.303 -1.201 -0.378 1.295 sum 7.311 11.550 4.755 14.473 Atomic orbital electron populations 1.25013 0.96310 1.05626 1.02907 1.24357 0.95819 0.96090 0.97803 1.17597 0.83355 0.98887 0.85579 1.44175 1.73923 1.00768 1.11476 1.19453 1.24731 0.87506 1.09163 0.89718 1.25573 0.96557 1.00424 1.00735 1.70281 1.20316 1.20831 1.43588 0.85497 0.78247 0.79178 0.78419 1.20963 1.22592 1.19968 1.19633 0.86620 0.84754 1.00603 1.25102 1.00957 0.92892 0.82838 1.21832 0.91312 1.07362 1.03826 1.22211 1.01497 0.95888 0.91285 1.20839 0.83899 1.13621 0.98131 1.19147 0.84235 0.75252 0.80550 1.90883 1.15510 1.53972 1.80236 1.86694 1.44480 1.70071 1.26279 1.23466 0.94430 0.96875 0.87331 1.21854 1.00735 1.02988 0.94900 1.84117 1.24971 1.59039 1.37872 0.75863 0.91665 0.92704 0.94200 0.91130 0.87445 0.80951 0.80332 0.90660 0.90177 0.87309 0.91380 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.05 19.25 74.32 1.43 -10.62 16 2 C -0.14 -6.52 11.50 31.13 0.36 -6.17 16 3 C 0.27 12.73 5.41 84.58 0.46 13.18 16 4 N -0.58 -26.93 2.47 -716.90 -1.77 -28.71 16 5 C -0.28 -13.99 9.63 84.03 0.81 -13.18 16 6 H 0.09 4.02 7.92 -2.91 -0.02 4.00 16 7 C -0.04 -1.85 4.82 84.86 0.41 -1.44 16 8 N -0.91 -50.16 9.61 21.65 0.21 -49.95 16 9 Si 0.96 42.77 29.61 68.60 2.03 44.80 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.21 7.85 6.20 85.63 0.53 8.38 16 14 C 0.04 1.36 6.89 24.98 0.17 1.53 16 15 C -0.22 -7.04 10.77 22.07 0.24 -6.81 16 16 C -0.09 -2.70 10.62 22.40 0.24 -2.46 16 17 C -0.12 -3.87 7.18 24.04 0.17 -3.70 16 18 C 0.56 17.94 7.93 69.97 0.55 18.50 16 19 O -0.51 -17.08 16.66 19.42 0.32 -16.76 16 20 O -0.36 -10.41 10.23 -56.73 -0.58 -10.99 16 21 C 0.05 1.05 6.20 71.98 0.45 1.50 16 22 C -0.15 -2.16 10.29 71.98 0.74 -1.41 16 23 O -0.16 -6.01 10.67 -4.94 -0.05 -6.06 16 24 H 0.22 7.68 7.80 -4.41 -0.03 7.65 16 25 H 0.07 3.41 6.59 -2.39 -0.02 3.39 16 26 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 27 H 0.25 13.68 8.31 -92.71 -0.77 12.90 16 28 H 0.07 2.50 8.07 -2.38 -0.02 2.48 16 29 H 0.11 3.65 8.04 -2.39 -0.02 3.63 16 30 H 0.17 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.18 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -62.71 328.94 7.79 -54.91 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.07 Total: 15.46 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.56 Total: -2.70 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.56 Total: -78.66 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.31 Total: -33.81 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -62.71 7.79 -54.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.057 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds