Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47423 * 2 1 4 4 O 1.42906 * 109.47014 * 120.00048 * 2 1 3 5 5 C 1.35657 * 116.99711 * 275.11893 * 4 2 1 6 6 C 1.39091 * 119.88169 * 185.68667 * 5 4 2 7 7 C 1.37115 * 120.11011 * 180.27700 * 6 5 4 8 8 C 1.40043 * 119.88674 * 359.49266 * 7 6 5 9 9 C 1.46862 * 120.11252 * 180.27612 * 8 7 6 10 10 O 1.21288 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.40037 * 119.76909 * 0.25751 * 8 7 6 12 12 C 1.37111 * 119.88386 * 359.97438 * 11 8 7 13 13 C 1.50702 * 109.46895 * 239.99536 * 2 1 3 14 14 O 1.21277 * 120.00218 * 244.99856 * 13 2 1 15 15 N 1.34777 * 119.99863 * 65.00599 * 13 2 1 16 16 C 1.46497 * 120.00259 * 179.97438 * 15 13 2 17 17 C 1.50705 * 109.47337 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99674 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99944 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00384 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46873 * 89.99905 * 21 19 17 23 23 H 1.48501 * 109.46982 * 210.00128 * 21 19 17 24 24 H 1.48504 * 109.47010 * 330.00245 * 21 19 17 25 25 H 1.09001 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46586 * 299.99703 * 1 2 3 27 27 H 1.08990 * 109.46788 * 60.00134 * 1 2 3 28 28 H 1.07995 * 119.94119 * 0.04508 * 6 5 4 29 29 H 1.08002 * 120.05386 * 179.77174 * 7 6 5 30 30 H 1.07997 * 119.99459 * 180.02562 * 9 8 7 31 31 H 1.08007 * 120.05546 * 180.02562 * 11 8 7 32 32 H 1.08008 * 119.94119 * 180.02562 * 12 11 8 33 33 H 0.97009 * 120.00104 * 359.97438 * 15 13 2 34 34 H 1.08993 * 109.47107 * 299.99922 * 16 15 13 35 35 H 1.08998 * 109.47218 * 59.99860 * 16 15 13 36 36 H 0.97001 * 120.00737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1100 0.0607 2.3027 6 6 2.6773 -0.5010 3.4417 7 6 2.7792 0.2351 4.5940 8 6 2.3205 1.5580 4.6198 9 6 2.4327 2.3530 5.8495 10 8 2.9237 1.8640 6.8450 11 6 1.7549 2.1204 3.4687 12 6 1.6533 1.3741 2.3229 13 6 2.0323 -0.7105 -1.2304 14 8 2.6530 -1.7468 -1.1214 15 7 1.7920 -0.1943 -2.4520 16 6 2.2807 -0.8846 -3.6481 17 6 1.8814 -0.1067 -4.8756 18 1 1.3201 0.8105 -4.7746 19 6 2.2336 -0.5653 -6.1271 20 7 2.9175 -1.6818 -6.2500 21 14 1.7393 0.3994 -7.6485 22 1 2.8042 1.3797 -7.9807 23 1 1.5532 -0.5345 -8.7880 24 1 0.4675 1.1200 -7.3862 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 3.0348 -1.5198 3.4194 29 1 3.2165 -0.2031 5.4789 30 1 2.0780 3.3729 5.8674 31 1 1.4000 3.1404 3.4833 32 1 1.2176 1.8071 1.4345 33 1 1.2953 0.6344 -2.5392 34 1 3.3669 -0.9625 -3.6043 35 1 1.8464 -1.8833 -3.6942 36 1 3.1649 -2.0047 -7.1306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803240231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -86.697207 kcal Electronic energy + Delta-G solvation = -20198.146555 eV Core-core repulsion = 16840.935646 eV Total energy + Delta-G solvation = -3357.210909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79550 -39.52779 -38.58857 -37.09380 -34.34592 -32.83082 -32.06083 -31.14549 -30.43288 -27.37132 -25.31692 -24.08365 -23.26700 -22.37792 -21.08183 -19.77866 -18.56780 -17.67229 -17.04577 -16.32293 -15.76106 -15.70750 -15.37818 -15.02277 -14.64849 -14.48888 -14.36530 -14.14056 -13.77710 -13.50539 -13.12143 -12.85202 -12.60306 -12.45010 -12.11962 -11.88005 -11.82075 -11.19108 -11.08072 -11.00755 -10.92076 -10.38780 -10.06153 -9.49372 -9.41764 -9.19831 -8.83347 -8.46452 -8.04887 -6.24127 -4.32100 0.44189 1.07830 2.20302 2.71860 3.08872 3.19150 3.25589 3.27624 3.54221 3.95212 4.01493 4.27805 4.39997 4.51229 4.66644 4.85965 4.89011 5.00342 5.09241 5.12235 5.20799 5.30615 5.47114 5.51157 5.68310 5.85804 5.96497 5.99918 6.10300 6.39016 7.08348 7.17317 7.19289 7.27371 7.40440 7.55260 7.86972 8.43332 8.65567 8.89999 9.34532 10.85966 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.042783 B = 0.002863 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.312115 B = 9776.166162 C =10063.531885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.062 3.938 3 H 0.097 0.903 4 O -0.276 6.276 5 C 0.176 3.824 6 C -0.168 4.168 7 C -0.017 4.017 8 C -0.245 4.245 9 C 0.387 3.613 10 O -0.471 6.471 11 C -0.023 4.023 12 C -0.232 4.232 13 C 0.503 3.497 14 O -0.531 6.531 15 N -0.705 5.705 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.391 0.609 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 10.012 17.863 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 H 0.115 0.885 4 O -0.187 6.187 5 C 0.128 3.872 6 C -0.187 4.187 7 C -0.036 4.036 8 C -0.247 4.247 9 C 0.247 3.753 10 O -0.346 6.346 11 C -0.041 4.041 12 C -0.250 4.250 13 C 0.285 3.715 14 O -0.408 6.408 15 N -0.355 5.355 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.224 0.776 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.636 8.634 18.246 20.711 hybrid contribution -0.598 1.073 -1.252 1.754 sum -5.234 9.708 16.994 20.259 Atomic orbital electron populations 1.22328 0.92573 1.04636 1.03691 1.22474 0.95876 0.97161 0.84314 0.88516 1.86228 1.79465 1.37203 1.15795 1.19559 0.90875 0.89964 0.86763 1.20385 1.04945 1.02228 0.91093 1.21100 0.92958 0.92394 0.97099 1.20790 1.09650 0.96918 0.97311 1.23873 0.74007 0.92179 0.85220 1.90525 1.34118 1.74128 1.35805 1.21030 0.93035 0.99094 0.90983 1.21227 1.08642 0.94512 1.00662 1.19852 0.81396 0.86051 0.84211 1.90717 1.40357 1.23346 1.86350 1.46383 1.55868 1.27171 1.06050 1.19181 0.95429 0.93008 0.79330 1.21182 1.37358 1.09279 0.90586 0.91804 1.24952 0.94694 0.95062 0.99263 1.69965 1.37176 1.20589 1.24367 0.86396 0.78914 0.79571 0.81916 1.20411 1.20946 1.19721 0.90525 0.91026 0.89743 0.84305 0.84398 0.88264 0.84755 0.84372 0.77574 0.95292 0.95248 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.12 37.16 0.34 -1.54 16 2 C 0.06 0.84 2.63 -27.88 -0.07 0.77 16 3 H 0.10 1.06 6.30 -51.93 -0.33 0.73 16 4 O -0.28 -4.19 9.32 -38.53 -0.36 -4.55 16 5 C 0.18 2.16 6.61 -38.96 -0.26 1.91 16 6 C -0.17 -1.93 9.95 -39.67 -0.39 -2.33 16 7 C -0.02 -0.18 9.57 -39.31 -0.38 -0.55 16 8 C -0.25 -2.22 5.87 -105.06 -0.62 -2.83 16 9 C 0.39 3.15 11.44 34.22 0.39 3.54 16 10 O -0.47 -5.68 17.16 5.55 0.10 -5.58 16 11 C -0.02 -0.18 9.77 -39.32 -0.38 -0.56 16 12 C -0.23 -2.20 8.19 -39.68 -0.32 -2.52 16 13 C 0.50 9.71 7.18 -10.98 -0.08 9.63 16 14 O -0.53 -12.90 16.51 -14.30 -0.24 -13.14 16 15 N -0.70 -13.87 5.51 -61.47 -0.34 -14.21 16 16 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 17 C -0.55 -14.21 9.28 -34.44 -0.32 -14.53 16 18 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.88 -25.45 13.29 55.43 0.74 -24.71 16 21 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.61 6.89 -51.93 -0.36 0.25 16 27 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 28 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.14 1.32 7.64 -52.49 -0.40 0.92 16 30 H 0.10 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 32 H 0.14 1.07 5.40 -52.48 -0.28 0.78 16 33 H 0.39 6.30 8.10 -40.82 -0.33 5.97 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -34.09 319.88 -6.71 -40.79 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.18 Total: 2.44 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.22 Total: -1.03 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.40 Total: -38.93 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.50 Total: -23.27 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.09 -6.71 -40.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803240231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.906 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds