Wall clock time and date at job start Mon Mar 30 2020 01:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47423 * 2 1 4 4 O 1.42906 * 109.47014 * 120.00048 * 2 1 3 5 5 C 1.35657 * 116.99711 * 275.11893 * 4 2 1 6 6 C 1.39091 * 119.88169 * 185.68667 * 5 4 2 7 7 C 1.37115 * 120.11011 * 180.27700 * 6 5 4 8 8 C 1.40043 * 119.88674 * 359.49266 * 7 6 5 9 9 C 1.46862 * 120.11252 * 180.27612 * 8 7 6 10 10 O 1.21288 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.40037 * 119.76909 * 0.25751 * 8 7 6 12 12 C 1.37111 * 119.88386 * 359.97438 * 11 8 7 13 13 C 1.50702 * 109.46895 * 239.99536 * 2 1 3 14 14 O 1.21277 * 120.00218 * 244.99856 * 13 2 1 15 15 N 1.34777 * 119.99863 * 65.00599 * 13 2 1 16 16 C 1.46497 * 120.00259 * 179.97438 * 15 13 2 17 17 C 1.50705 * 109.47337 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99674 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99944 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00384 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99862 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46873 * 89.99905 * 21 19 17 23 23 H 1.48501 * 109.46982 * 210.00128 * 21 19 17 24 24 H 1.48504 * 109.47010 * 330.00245 * 21 19 17 25 25 H 1.09001 * 109.47078 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46586 * 299.99703 * 1 2 3 27 27 H 1.08990 * 109.46788 * 60.00134 * 1 2 3 28 28 H 1.07995 * 119.94119 * 0.04508 * 6 5 4 29 29 H 1.08002 * 120.05386 * 179.77174 * 7 6 5 30 30 H 1.07997 * 119.99459 * 180.02562 * 9 8 7 31 31 H 1.08007 * 120.05546 * 180.02562 * 11 8 7 32 32 H 1.08008 * 119.94119 * 180.02562 * 12 11 8 33 33 H 0.97009 * 120.00104 * 359.97438 * 15 13 2 34 34 H 1.08993 * 109.47107 * 299.99922 * 16 15 13 35 35 H 1.08998 * 109.47218 * 59.99860 * 16 15 13 36 36 H 0.97001 * 120.00737 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1100 0.0607 2.3027 6 6 2.6773 -0.5010 3.4417 7 6 2.7792 0.2351 4.5940 8 6 2.3205 1.5580 4.6198 9 6 2.4327 2.3530 5.8495 10 8 2.9237 1.8640 6.8450 11 6 1.7549 2.1204 3.4687 12 6 1.6533 1.3741 2.3229 13 6 2.0323 -0.7105 -1.2304 14 8 2.6530 -1.7468 -1.1214 15 7 1.7920 -0.1943 -2.4520 16 6 2.2807 -0.8846 -3.6481 17 6 1.8814 -0.1067 -4.8756 18 1 1.3201 0.8105 -4.7746 19 6 2.2336 -0.5653 -6.1271 20 7 2.9175 -1.6818 -6.2500 21 14 1.7393 0.3994 -7.6485 22 1 2.8042 1.3797 -7.9807 23 1 1.5532 -0.5345 -8.7880 24 1 0.4675 1.1200 -7.3862 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 3.0348 -1.5198 3.4194 29 1 3.2165 -0.2031 5.4789 30 1 2.0780 3.3729 5.8674 31 1 1.4000 3.1404 3.4833 32 1 1.2176 1.8071 1.4345 33 1 1.2953 0.6344 -2.5392 34 1 3.3669 -0.9625 -3.6043 35 1 1.8464 -1.8833 -3.6942 36 1 3.1649 -2.0047 -7.1306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803240231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:47 Heat of formation + Delta-G solvation = -110.682590 kcal Electronic energy + Delta-G solvation = -20199.186639 eV Core-core repulsion = 16840.935646 eV Total energy + Delta-G solvation = -3358.250993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78357 -40.58617 -39.76958 -38.03076 -36.22459 -34.55866 -33.25876 -31.98610 -31.25871 -29.26745 -26.29120 -25.33871 -24.24680 -23.74447 -22.00860 -21.23914 -19.48031 -19.19029 -17.90134 -17.74400 -17.08780 -16.90272 -16.77929 -16.20354 -15.86308 -15.77883 -15.31138 -15.18830 -14.79378 -14.50320 -14.31644 -14.13509 -14.02081 -13.61749 -13.37039 -13.24569 -12.93966 -12.84123 -12.71598 -12.22173 -12.10711 -11.81546 -11.49881 -10.81957 -10.80692 -10.73884 -10.13376 -9.94055 -9.31412 -8.29449 -6.46542 -0.29229 0.35400 1.44100 1.46975 1.49649 1.55787 1.57870 1.64539 2.36717 2.67782 2.81633 3.06088 3.44790 3.53968 3.73255 3.79314 3.85321 3.91016 4.19003 4.36889 4.45654 4.60309 4.65067 4.69546 4.99476 5.07074 5.10997 5.17396 5.20299 5.24895 5.37076 5.41646 5.59976 5.67586 5.81643 6.26061 6.57701 6.62968 6.78702 7.21052 7.37175 8.82801 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.042783 B = 0.002863 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.312115 B = 9776.166162 C =10063.531885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.075 3.925 3 H 0.134 0.866 4 O -0.312 6.312 5 C 0.149 3.851 6 C -0.188 4.188 7 C -0.029 4.029 8 C -0.250 4.250 9 C 0.396 3.604 10 O -0.517 6.517 11 C -0.006 4.006 12 C -0.229 4.229 13 C 0.496 3.504 14 O -0.592 6.592 15 N -0.694 5.694 16 C 0.266 3.734 17 C -0.553 4.553 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.986 3.014 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.252 1.252 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.413 0.587 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 14.483 18.198 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 H 0.152 0.848 4 O -0.225 6.225 5 C 0.102 3.898 6 C -0.207 4.207 7 C -0.048 4.048 8 C -0.251 4.251 9 C 0.259 3.741 10 O -0.394 6.394 11 C -0.023 4.023 12 C -0.247 4.247 13 C 0.282 3.718 14 O -0.472 6.472 15 N -0.345 5.345 16 C 0.143 3.857 17 C -0.591 4.591 18 H 0.108 0.892 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.175 1.175 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.174 0.826 31 H 0.202 0.798 32 H 0.181 0.819 33 H 0.250 0.750 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.868 13.165 18.612 23.810 hybrid contribution 0.125 -0.337 -1.232 1.284 sum -6.742 12.828 17.380 22.629 Atomic orbital electron populations 1.22362 0.89836 1.04171 1.06225 1.22402 0.97551 0.97228 0.81251 0.84826 1.86169 1.80582 1.38883 1.16856 1.19784 0.92758 0.91445 0.85775 1.20419 1.06038 1.02200 0.91995 1.21185 0.93530 0.93592 0.96468 1.21176 1.08896 0.96262 0.98786 1.24605 0.72203 0.93685 0.83586 1.90533 1.36286 1.75301 1.37253 1.21514 0.90851 1.00790 0.89179 1.21533 1.07845 0.93024 1.02318 1.20972 0.79789 0.85356 0.85675 1.90685 1.42903 1.26259 1.87371 1.46018 1.55922 1.27631 1.04933 1.18609 0.92805 0.92085 0.82187 1.21604 1.37092 1.09896 0.90521 0.89189 1.26088 0.94410 0.95977 1.03250 1.70140 1.38839 1.22844 1.25294 0.85142 0.79350 0.77822 0.76814 1.19662 1.21299 1.17511 0.92595 0.87757 0.87789 0.85663 0.84804 0.82616 0.79820 0.81895 0.74973 0.99406 0.99308 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.12 71.98 0.66 -2.51 16 2 C 0.07 1.94 2.63 29.85 0.08 2.02 16 3 H 0.13 2.45 6.30 -2.39 -0.02 2.43 16 4 O -0.31 -9.56 9.32 -70.74 -0.66 -10.22 16 5 C 0.15 3.53 6.61 22.68 0.15 3.68 16 6 C -0.19 -4.50 9.95 22.21 0.22 -4.28 16 7 C -0.03 -0.60 9.57 22.44 0.21 -0.39 16 8 C -0.25 -3.79 5.87 -20.15 -0.12 -3.91 16 9 C 0.40 5.05 11.44 70.08 0.80 5.85 16 10 O -0.52 -11.67 17.16 -3.05 -0.05 -11.72 16 11 C -0.01 -0.06 9.77 22.44 0.22 0.16 16 12 C -0.23 -3.46 8.19 22.21 0.18 -3.28 16 13 C 0.50 19.59 7.18 87.66 0.63 20.22 16 14 O -0.59 -30.60 16.51 15.97 0.26 -30.34 16 15 N -0.69 -27.43 5.51 -466.80 -2.57 -30.00 16 16 C 0.27 14.14 5.43 85.64 0.46 14.61 16 17 C -0.55 -28.77 9.28 25.60 0.24 -28.53 16 18 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -55.43 13.29 21.44 0.28 -55.14 16 21 Si 0.99 40.80 29.54 68.60 2.03 42.83 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.31 6.89 -2.39 -0.02 1.30 16 27 H 0.10 1.54 7.92 -2.39 -0.02 1.52 16 28 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.13 2.72 7.64 -2.91 -0.02 2.70 16 30 H 0.16 0.30 8.06 -2.91 -0.02 0.28 16 31 H 0.18 0.15 8.06 -2.91 -0.02 0.12 16 32 H 0.16 1.59 5.40 -2.91 -0.02 1.57 16 33 H 0.41 12.48 8.10 -92.70 -0.75 11.73 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -81.57 319.88 3.85 -77.72 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.36 Total: 12.64 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 4.20 Total: 4.23 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -2.29 Total: -85.14 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.45 Total: -52.27 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -81.57 3.85 -77.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803240231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.966 kcal (2) G-P(sol) polarization free energy of solvation -81.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds