Wall clock time and date at job start Mon Mar 30 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35663 * 117.00133 * 2 1 4 4 C 1.39317 * 119.61644 * 180.27955 * 3 2 1 5 5 C 1.38330 * 119.30885 * 180.23203 * 4 3 2 6 6 C 1.38783 * 118.56304 * 359.50233 * 5 4 3 7 7 C 1.39166 * 119.18444 * 0.25294 * 6 5 4 8 8 C 1.48051 * 119.69467 * 179.97438 * 7 6 5 9 9 O 1.21430 * 119.99552 * 359.97438 * 8 7 6 10 10 O 1.34683 * 120.00042 * 180.02562 * 8 7 6 11 11 C 1.45198 * 116.99697 * 177.70698 * 10 8 7 12 12 C 1.50700 * 112.85109 * 65.17375 * 11 10 8 13 13 H 1.07997 * 119.99962 * 242.53159 * 12 11 10 14 14 C 1.37880 * 119.99954 * 62.53170 * 12 11 10 15 15 N 1.31516 * 119.99875 * 353.76635 * 14 12 11 16 16 Si 1.86793 * 120.00070 * 173.76557 * 14 12 11 17 17 H 1.48502 * 109.47189 * 90.00119 * 16 14 12 18 18 H 1.48494 * 109.47339 * 209.99711 * 16 14 12 19 19 H 1.48501 * 109.47326 * 330.00338 * 16 14 12 20 20 C 1.53788 * 113.61344 * 293.97713 * 11 10 8 21 21 C 1.53956 * 87.01511 * 220.05088 * 20 11 10 22 22 C 1.53778 * 87.11583 * 25.36298 * 21 20 11 23 23 N 1.31880 * 119.61554 * 0.02562 * 3 2 1 24 24 H 1.09001 * 109.46549 * 299.99727 * 1 2 3 25 25 H 1.08993 * 109.47055 * 59.99508 * 1 2 3 26 26 H 1.08996 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.34136 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.71233 * 179.77346 * 5 4 3 29 29 H 1.08001 * 120.40642 * 180.23139 * 6 5 4 30 30 H 0.96993 * 120.00131 * 185.02482 * 15 14 12 31 31 H 1.08997 * 113.61468 * 334.57130 * 20 11 10 32 32 H 1.08999 * 113.61125 * 105.47564 * 20 11 10 33 33 H 1.08996 * 113.53529 * 270.80568 * 21 20 11 34 34 H 1.09000 * 113.74034 * 139.94966 * 21 20 11 35 35 H 1.08998 * 113.61555 * 220.09016 * 22 21 20 36 36 H 1.09004 * 113.69004 * 89.19791 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4366 1.2723 -0.0059 5 6 4.0581 2.5082 -0.0010 6 6 3.2672 3.6486 -0.0009 7 6 1.8820 3.5138 -0.0003 8 6 1.0275 4.7228 0.0004 9 8 1.5360 5.8256 0.0010 10 8 -0.3136 4.5996 0.0015 11 6 -1.0883 5.8265 0.0540 12 6 -0.9130 6.6822 -1.1741 13 1 -0.4825 7.6689 -1.0877 14 6 -1.3022 6.2054 -2.4079 15 7 -1.7116 4.9619 -2.5330 16 14 -1.2479 7.3256 -3.9017 17 1 0.0811 7.2155 -4.5550 18 1 -2.3063 6.9219 -4.8618 19 1 -1.4753 8.7300 -3.4758 20 6 -0.9268 6.6011 1.3727 21 6 -2.4373 6.8889 1.2950 22 6 -2.5586 5.6103 0.4494 23 7 1.3193 2.3100 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0241 0.3662 -0.0109 28 1 5.1354 2.5839 -0.0017 29 1 3.7211 4.6286 -0.0008 30 1 -1.9158 4.6046 -3.4113 31 1 -0.6451 5.9719 2.2169 32 1 -0.3063 7.4926 1.2822 33 1 -2.6792 7.7995 0.7470 34 1 -2.9460 6.8262 2.2570 35 1 -3.2534 5.7031 -0.3853 36 1 -2.7240 4.7089 1.0396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:21 Heat of formation + Delta-G solvation = -55.210062 kcal Electronic energy + Delta-G solvation = -21838.702531 eV Core-core repulsion = 18482.857006 eV Total energy + Delta-G solvation = -3355.845524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50574 -39.14892 -37.77595 -36.75959 -34.19814 -32.43714 -32.26990 -30.62116 -27.21047 -26.24625 -24.76462 -24.52982 -22.89775 -22.58943 -20.52817 -18.56042 -17.95780 -17.51257 -16.35243 -15.86775 -15.86460 -15.37879 -15.11364 -14.82091 -14.35538 -14.06847 -13.82600 -13.42540 -13.10456 -12.94627 -12.30743 -12.05662 -11.61556 -11.55084 -11.12788 -11.03545 -10.99760 -10.86606 -10.46036 -10.28448 -9.94902 -9.85749 -9.80608 -9.79080 -9.25940 -8.79545 -8.56162 -8.52480 -8.38435 -6.09592 -4.22586 0.90252 1.42184 3.21089 3.26119 3.30488 3.33206 3.37449 3.71659 4.26693 4.35645 4.51152 5.03442 5.11347 5.15712 5.28149 5.44847 5.51118 5.59720 5.69154 5.77180 5.87779 5.92375 5.99987 6.14069 6.26616 6.42624 6.47422 6.52403 6.65449 6.91755 7.11559 7.28629 7.33045 7.54479 7.75855 7.86914 7.95738 8.30486 8.80541 9.15181 9.47353 10.94008 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.006107 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.191392 B = 4583.925082 C = 4734.504272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.312 6.312 3 C 0.312 3.688 4 C -0.176 4.176 5 C -0.053 4.053 6 C -0.157 4.157 7 C 0.153 3.847 8 C 0.515 3.485 9 O -0.498 6.498 10 O -0.316 6.316 11 C 0.236 3.764 12 C -0.517 4.517 13 H 0.069 0.931 14 C 0.075 3.925 15 N -0.856 5.856 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.160 4.160 21 C -0.131 4.131 22 C -0.106 4.106 23 N -0.486 5.486 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.263 0.737 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 -7.461 5.515 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.219 6.219 3 C 0.130 3.870 4 C -0.197 4.197 5 C -0.078 4.078 6 C -0.177 4.177 7 C 0.017 3.983 8 C 0.356 3.644 9 O -0.387 6.387 10 O -0.230 6.230 11 C 0.202 3.798 12 C -0.554 4.554 13 H 0.087 0.913 14 C -0.131 4.131 15 N -0.492 5.492 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.197 4.197 21 C -0.169 4.169 22 C -0.144 4.144 23 N -0.212 5.212 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.435 -7.536 5.399 10.746 hybrid contribution 0.725 0.644 -1.009 1.400 sum 6.161 -6.891 4.390 10.233 Atomic orbital electron populations 1.22896 0.76710 1.02528 1.03533 1.86178 1.23376 1.24303 1.88066 1.19869 0.89258 0.84898 0.92961 1.21230 0.92013 0.99620 1.06840 1.21349 1.00556 0.90817 0.95084 1.22004 0.92972 1.00876 1.01886 1.20503 0.91159 0.89857 0.96781 1.20291 0.83501 0.86372 0.74205 1.90742 1.75753 1.26440 1.45756 1.86669 1.15216 1.41112 1.79958 1.21299 0.86893 0.79529 0.92032 1.20942 1.42167 1.01532 0.90746 0.91308 1.25094 0.93742 0.95146 0.99116 1.70051 1.42205 1.13285 1.23622 0.86577 0.77834 0.81302 0.82354 1.20535 1.20995 1.19444 1.23567 0.96360 1.00939 0.98871 1.22563 0.96401 0.99226 0.98673 1.22884 0.97769 0.95300 0.98441 1.67410 1.40345 0.97955 1.15481 0.92013 0.91536 0.88916 0.83969 0.83541 0.83163 0.92752 0.92241 0.91715 0.90185 0.92964 0.90716 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.58 16 2 O -0.31 -4.77 10.48 -18.69 -0.20 -4.97 16 3 C 0.31 5.18 7.49 -17.13 -0.13 5.06 16 4 C -0.18 -2.33 10.05 -39.15 -0.39 -2.72 16 5 C -0.05 -0.66 10.16 -39.35 -0.40 -1.06 16 6 C -0.16 -2.55 9.63 -39.04 -0.38 -2.93 16 7 C 0.15 3.15 6.74 -83.04 -0.56 2.59 16 8 C 0.52 12.61 7.51 34.76 0.26 12.87 16 9 O -0.50 -12.76 14.81 -19.21 -0.28 -13.04 16 10 O -0.32 -8.31 9.57 -40.45 -0.39 -8.70 16 11 C 0.24 6.05 0.47 -90.95 -0.04 6.01 16 12 C -0.52 -14.37 7.08 -34.44 -0.24 -14.61 16 13 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 14 C 0.08 2.09 5.30 -17.82 -0.09 2.00 16 15 N -0.86 -24.43 12.79 55.43 0.71 -23.72 16 16 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.16 -3.57 6.57 -25.82 -0.17 -3.74 16 21 C -0.13 -2.65 7.81 -25.83 -0.20 -2.86 16 22 C -0.11 -2.46 7.28 -25.92 -0.19 -2.65 16 23 N -0.49 -9.70 8.96 -9.88 -0.09 -9.79 16 24 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 25 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.15 2.30 7.63 -52.49 -0.40 1.90 16 30 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16 33 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.84 7.98 -51.93 -0.41 1.43 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -32.02 316.79 -6.57 -38.59 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.58 Total: 0.91 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.49 Total: -0.46 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.62 Total: -33.50 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.87 Total: -26.71 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.02 -6.57 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.624 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds