Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35663 * 117.00133 * 2 1 4 4 C 1.39317 * 119.61644 * 180.27955 * 3 2 1 5 5 C 1.38330 * 119.30885 * 180.23203 * 4 3 2 6 6 C 1.38783 * 118.56304 * 359.50233 * 5 4 3 7 7 C 1.39166 * 119.18444 * 0.25294 * 6 5 4 8 8 C 1.48051 * 119.69467 * 179.97438 * 7 6 5 9 9 O 1.21430 * 119.99552 * 359.97438 * 8 7 6 10 10 O 1.34683 * 120.00042 * 180.02562 * 8 7 6 11 11 C 1.45198 * 116.99697 * 177.70698 * 10 8 7 12 12 C 1.50700 * 112.85109 * 65.17375 * 11 10 8 13 13 H 1.07997 * 119.99962 * 242.53159 * 12 11 10 14 14 C 1.37880 * 119.99954 * 62.53170 * 12 11 10 15 15 N 1.31516 * 119.99875 * 353.76635 * 14 12 11 16 16 Si 1.86793 * 120.00070 * 173.76557 * 14 12 11 17 17 H 1.48502 * 109.47189 * 90.00119 * 16 14 12 18 18 H 1.48494 * 109.47339 * 209.99711 * 16 14 12 19 19 H 1.48501 * 109.47326 * 330.00338 * 16 14 12 20 20 C 1.53788 * 113.61344 * 293.97713 * 11 10 8 21 21 C 1.53956 * 87.01511 * 220.05088 * 20 11 10 22 22 C 1.53778 * 87.11583 * 25.36298 * 21 20 11 23 23 N 1.31880 * 119.61554 * 0.02562 * 3 2 1 24 24 H 1.09001 * 109.46549 * 299.99727 * 1 2 3 25 25 H 1.08993 * 109.47055 * 59.99508 * 1 2 3 26 26 H 1.08996 * 109.46801 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.34136 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.71233 * 179.77346 * 5 4 3 29 29 H 1.08001 * 120.40642 * 180.23139 * 6 5 4 30 30 H 0.96993 * 120.00131 * 185.02482 * 15 14 12 31 31 H 1.08997 * 113.61468 * 334.57130 * 20 11 10 32 32 H 1.08999 * 113.61125 * 105.47564 * 20 11 10 33 33 H 1.08996 * 113.53529 * 270.80568 * 21 20 11 34 34 H 1.09000 * 113.74034 * 139.94966 * 21 20 11 35 35 H 1.08998 * 113.61555 * 220.09016 * 22 21 20 36 36 H 1.09004 * 113.69004 * 89.19791 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4366 1.2723 -0.0059 5 6 4.0581 2.5082 -0.0010 6 6 3.2672 3.6486 -0.0009 7 6 1.8820 3.5138 -0.0003 8 6 1.0275 4.7228 0.0004 9 8 1.5360 5.8256 0.0010 10 8 -0.3136 4.5996 0.0015 11 6 -1.0883 5.8265 0.0540 12 6 -0.9130 6.6822 -1.1741 13 1 -0.4825 7.6689 -1.0877 14 6 -1.3022 6.2054 -2.4079 15 7 -1.7116 4.9619 -2.5330 16 14 -1.2479 7.3256 -3.9017 17 1 0.0811 7.2155 -4.5550 18 1 -2.3063 6.9219 -4.8618 19 1 -1.4753 8.7300 -3.4758 20 6 -0.9268 6.6011 1.3727 21 6 -2.4373 6.8889 1.2950 22 6 -2.5586 5.6103 0.4494 23 7 1.3193 2.3100 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0241 0.3662 -0.0109 28 1 5.1354 2.5839 -0.0017 29 1 3.7211 4.6286 -0.0008 30 1 -1.9158 4.6046 -3.4113 31 1 -0.6451 5.9719 2.2169 32 1 -0.3063 7.4926 1.2822 33 1 -2.6792 7.7995 0.7470 34 1 -2.9460 6.8262 2.2570 35 1 -3.2534 5.7031 -0.3853 36 1 -2.7240 4.7089 1.0396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -76.598064 kcal Electronic energy + Delta-G solvation = -21839.629984 eV Core-core repulsion = 18482.857006 eV Total energy + Delta-G solvation = -3356.772977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.84417 -40.90371 -39.21142 -38.38699 -36.09616 -34.39900 -33.65354 -31.91281 -28.50102 -28.16247 -26.44275 -26.24160 -24.53139 -23.87874 -22.11827 -20.49027 -19.37471 -19.09592 -18.08448 -17.15258 -17.10165 -17.00039 -16.82455 -16.71056 -16.19671 -15.68309 -15.23666 -14.96794 -14.46850 -14.29442 -14.08033 -13.53832 -13.23555 -12.99656 -12.97460 -12.83825 -12.69225 -12.33013 -12.18181 -12.12491 -11.83053 -11.69534 -11.55839 -11.00621 -10.83706 -10.78160 -10.49474 -10.45050 -9.65648 -8.20153 -6.39592 -0.43001 0.25360 1.33457 1.34772 1.45899 1.70940 2.03371 2.14080 2.34240 2.80837 3.03872 3.23198 3.90240 3.92429 3.98357 4.00113 4.08983 4.22671 4.31575 4.41729 4.45856 4.47773 4.59829 4.78908 4.81932 4.88989 4.96014 5.07327 5.13265 5.34900 5.34990 5.39334 5.60266 5.72477 5.92685 6.10748 6.30742 6.63289 6.67802 7.23546 7.37466 8.82858 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.006107 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.191392 B = 4583.925082 C = 4734.504272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.290 3.710 4 C -0.150 4.150 5 C -0.032 4.032 6 C -0.150 4.150 7 C 0.108 3.892 8 C 0.505 3.495 9 O -0.526 6.526 10 O -0.335 6.335 11 C 0.209 3.791 12 C -0.531 4.531 13 H 0.053 0.947 14 C 0.031 3.969 15 N -0.884 5.884 16 Si 0.950 3.050 17 H -0.283 1.283 18 H -0.274 1.274 19 H -0.262 1.262 20 C -0.153 4.153 21 C -0.109 4.109 22 C -0.106 4.106 23 N -0.523 5.523 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.133 0.867 27 H 0.187 0.813 28 H 0.204 0.796 29 H 0.155 0.845 30 H 0.263 0.737 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -8.594 5.934 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.108 3.892 4 C -0.170 4.170 5 C -0.057 4.057 6 C -0.171 4.171 7 C -0.027 4.027 8 C 0.348 3.652 9 O -0.417 6.417 10 O -0.250 6.250 11 C 0.175 3.825 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.173 4.173 15 N -0.520 5.520 16 Si 0.775 3.225 17 H -0.209 1.209 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.190 4.190 21 C -0.146 4.146 22 C -0.144 4.144 23 N -0.250 5.250 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.151 0.849 27 H 0.204 0.796 28 H 0.221 0.779 29 H 0.173 0.827 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.261 -8.660 5.827 12.715 hybrid contribution 0.263 0.876 -1.104 1.433 sum 7.524 -7.784 4.723 11.811 Atomic orbital electron populations 1.22959 0.76321 1.04524 1.01601 1.86190 1.23742 1.23651 1.88104 1.20394 0.90806 0.84312 0.93654 1.21820 0.90541 1.01673 1.03012 1.21950 1.02732 0.88780 0.92242 1.22232 0.91393 1.02823 1.00613 1.20160 0.92079 0.88727 1.01688 1.21078 0.83155 0.87855 0.73071 1.90685 1.75876 1.27851 1.47259 1.86641 1.16678 1.41241 1.80417 1.21580 0.88270 0.79916 0.92758 1.21079 1.42163 1.01307 0.92239 0.92867 1.25790 0.93469 0.96367 1.01651 1.70161 1.43208 1.14616 1.24057 0.85675 0.77698 0.79918 0.79196 1.20863 1.19942 1.18593 1.23485 0.97873 1.00085 0.97599 1.22483 0.94776 0.97465 0.99877 1.22861 0.95888 0.97299 0.98353 1.67154 1.42225 0.98684 1.16897 0.93238 0.94199 0.84888 0.79555 0.77938 0.82732 0.92838 0.91278 0.92788 0.90253 0.88984 0.92945 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.12 10.38 113.37 1.18 2.30 16 2 O -0.31 -9.04 10.48 -89.79 -0.94 -9.98 16 3 C 0.29 9.27 7.49 84.95 0.64 9.91 16 4 C -0.15 -3.35 10.05 22.55 0.23 -3.12 16 5 C -0.03 -0.67 10.16 22.42 0.23 -0.44 16 6 C -0.15 -4.67 9.63 22.62 0.22 -4.46 16 7 C 0.11 4.51 6.74 41.81 0.28 4.79 16 8 C 0.50 25.83 7.51 70.43 0.53 26.36 16 9 O -0.53 -28.15 14.81 20.06 0.30 -27.85 16 10 O -0.34 -18.51 9.57 -55.92 -0.54 -19.05 16 11 C 0.21 11.06 0.47 -11.01 -0.01 11.06 16 12 C -0.53 -30.55 7.08 25.60 0.18 -30.37 16 13 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 14 C 0.03 1.75 5.30 84.66 0.45 2.20 16 15 N -0.88 -52.23 12.79 21.45 0.27 -51.95 16 16 Si 0.95 44.94 29.55 68.60 2.03 46.96 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 20 C -0.15 -6.92 6.57 31.18 0.20 -6.72 16 21 C -0.11 -4.33 7.81 31.18 0.24 -4.08 16 22 C -0.11 -5.02 7.28 31.12 0.23 -4.80 16 23 N -0.52 -21.26 8.96 -298.25 -2.67 -23.93 16 24 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 25 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 26 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 28 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.15 4.60 7.63 -2.91 -0.02 4.58 16 30 H 0.26 14.77 8.32 -92.71 -0.77 14.00 16 31 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.05 2.51 8.08 -2.39 -0.02 2.49 16 33 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.05 2.67 7.98 -2.39 -0.02 2.65 16 36 H 0.07 3.01 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -74.45 316.79 4.13 -70.32 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.08 Total: 12.84 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 4.60 Total: 2.63 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -2.40 Total: -75.89 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -1.18 Total: -56.87 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.45 4.13 -70.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.273 kcal (2) G-P(sol) polarization free energy of solvation -74.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds