Wall clock time and date at job start Mon Mar 30 2020 01:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20830 * 119.99898 * 2 1 4 4 O 1.34237 * 120.00532 * 180.02562 * 2 1 3 5 5 C 1.45188 * 117.00159 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47179 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46802 * 64.99993 * 6 5 4 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09003 * 109.47067 * 269.99049 * 1 2 3 25 25 H 1.08992 * 109.47403 * 29.99506 * 1 2 3 26 26 H 1.09004 * 109.46827 * 149.99472 * 1 2 3 27 27 H 1.09008 * 109.47157 * 60.00041 * 5 4 2 28 28 H 1.09006 * 109.47554 * 299.99766 * 5 4 2 29 29 H 1.09000 * 109.47033 * 305.00159 * 6 5 4 30 30 H 1.09002 * 109.46906 * 185.00146 * 6 5 4 31 31 H 0.97001 * 120.00109 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 33 33 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 34 34 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 35 35 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 36 36 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1783 -1.1625 -0.0005 5 6 3.6282 -1.0864 -0.0011 6 6 4.2131 -2.5002 -0.0010 7 7 3.8599 -3.1748 -1.2525 8 6 4.2697 -4.4393 -1.4754 9 8 4.9330 -5.0199 -0.6379 10 6 3.9143 -5.1189 -2.7369 11 6 3.1556 -4.4462 -3.7024 12 6 2.8206 -5.0715 -4.8664 13 6 3.2482 -6.3930 -5.1018 14 6 2.9092 -7.0424 -6.3079 15 1 3.5304 -7.8418 -6.6839 16 6 1.7658 -6.6495 -7.0183 17 7 0.8440 -5.9354 -6.4291 18 14 1.5606 -7.1475 -8.8070 19 1 1.5564 -8.6288 -8.9111 20 1 0.2765 -6.6116 -9.3258 21 1 2.6856 -6.5984 -9.6059 22 6 4.0158 -7.0641 -4.1295 23 6 4.3408 -6.4327 -2.9660 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 3.9644 -0.5544 0.8890 28 1 3.9638 -0.5540 -0.8911 29 1 3.8076 -3.0611 0.8411 30 1 5.2980 -2.4445 0.0882 31 1 3.3310 -2.7115 -1.9208 32 1 2.8323 -3.4314 -3.5231 33 1 2.2318 -4.5530 -5.6088 34 1 0.0532 -5.6633 -6.9207 35 1 4.3462 -8.0772 -4.3058 36 1 4.9288 -6.9465 -2.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816477516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:34 Heat of formation + Delta-G solvation = -117.701692 kcal Electronic energy + Delta-G solvation = -20325.142161 eV Core-core repulsion = 16966.586797 eV Total energy + Delta-G solvation = -3358.555365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57849 -39.08506 -37.24627 -36.72639 -34.36119 -33.87627 -31.10901 -30.32084 -29.46945 -28.93547 -25.89249 -23.25562 -21.83626 -21.28939 -20.86539 -19.69446 -17.85198 -17.54152 -17.08040 -16.81454 -16.07029 -15.62692 -15.23878 -14.69359 -14.06256 -13.96463 -13.68727 -13.29885 -13.19345 -12.97491 -12.72781 -12.55416 -12.37596 -12.11264 -11.91924 -11.75361 -11.37778 -11.27500 -10.99933 -10.86639 -10.70819 -10.64987 -10.07191 -9.56709 -9.37139 -9.00917 -8.66283 -7.73394 -7.54989 -7.04016 -4.61881 2.00335 2.21762 2.52450 2.91824 2.93542 2.97531 3.02367 3.72552 3.73077 3.85637 4.48091 4.55754 4.68767 4.92285 4.97832 5.04092 5.14526 5.44086 5.55127 5.63847 5.74311 6.02823 6.08666 6.26758 6.30703 6.75611 6.81666 6.86581 7.03056 7.11970 7.42265 7.55161 7.63294 7.77170 7.84542 8.05933 8.19788 8.38577 8.61831 8.73885 9.03781 9.88098 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.003861 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.373252 B = 7249.906963 C = 8522.676651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.460 3.540 3 O -0.520 6.520 4 O -0.352 6.352 5 C 0.055 3.945 6 C 0.126 3.874 7 N -0.740 5.740 8 C 0.573 3.427 9 O -0.576 6.576 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.773 5.773 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.238 4.238 23 C -0.022 4.022 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 9.161 6.059 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.304 3.696 3 O -0.409 6.409 4 O -0.268 6.268 5 C -0.019 4.019 6 C 0.001 3.999 7 N -0.395 5.395 8 C 0.368 3.632 9 O -0.458 6.458 10 C -0.289 4.289 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.146 4.146 17 N -0.396 5.396 18 Si 0.738 3.262 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.041 4.041 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.235 0.765 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.159 9.162 6.634 11.516 hybrid contribution -0.437 0.207 -1.051 1.157 sum -2.596 9.369 5.583 11.211 Atomic orbital electron populations 1.21629 0.87066 1.06115 1.05742 1.23889 0.92248 0.81543 0.71895 1.90689 1.71034 1.33217 1.45915 1.86596 1.22052 1.34628 1.83540 1.23407 0.76576 0.98336 1.03554 1.21269 0.99653 0.89936 0.89001 1.45863 1.58064 1.15702 1.19830 1.18587 0.77733 0.79913 0.87009 1.90636 1.41499 1.65842 1.47863 1.18883 1.15803 0.97681 0.96493 1.20470 0.96372 0.96990 0.94306 1.20972 1.05506 0.95324 0.97850 1.17784 0.87606 0.90913 0.91082 1.19825 1.07047 1.15926 1.04358 0.89740 1.26088 0.94793 0.93168 1.00595 1.69732 1.06059 1.26118 1.37737 0.86257 0.78613 0.80182 0.81193 1.18661 1.20048 1.18481 1.20728 1.10074 0.99496 0.95500 1.20361 0.95159 0.92731 0.95831 0.87818 0.87978 0.88415 0.89726 0.90357 0.90745 0.89618 0.76508 0.89386 0.86213 0.90188 0.88355 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.41 36.00 0.37 -0.66 16 2 C 0.46 5.15 8.07 36.00 0.29 5.44 16 3 O -0.52 -7.31 16.85 -18.75 -0.32 -7.63 16 4 O -0.35 -4.23 10.17 -39.28 -0.40 -4.63 16 5 C 0.06 0.62 5.60 37.16 0.21 0.83 16 6 C 0.13 1.67 6.07 -4.04 -0.02 1.65 16 7 N -0.74 -12.27 5.46 -61.31 -0.33 -12.60 16 8 C 0.57 12.08 7.76 -12.43 -0.10 11.99 16 9 O -0.58 -13.57 16.32 5.29 0.09 -13.48 16 10 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 11 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 12 C -0.18 -4.31 8.63 -39.27 -0.34 -4.65 16 13 C 0.13 3.27 5.57 -106.80 -0.59 2.68 16 14 C -0.44 -10.97 9.05 -37.75 -0.34 -11.31 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 17 N -0.77 -18.36 10.95 55.56 0.61 -17.75 16 18 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 20 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 23 C -0.02 -0.51 9.52 -39.61 -0.38 -0.88 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.82 8.13 -51.92 -0.42 0.40 16 28 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.40 6.10 6.47 -40.82 -0.26 5.84 16 32 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 33 H 0.12 2.94 6.18 -52.48 -0.32 2.62 16 34 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 35 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 36 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -30.35 319.47 -7.19 -37.53 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.25 Total: 9.87 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.36 Total: -8.22 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.27 Total: -30.35 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.63 Total: -25.74 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.35 -7.19 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816477516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.168 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds