Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20830 * 119.99898 * 2 1 4 4 O 1.34237 * 120.00532 * 180.02562 * 2 1 3 5 5 C 1.45188 * 117.00159 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47179 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.46802 * 64.99993 * 6 5 4 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09003 * 109.47067 * 269.99049 * 1 2 3 25 25 H 1.08992 * 109.47403 * 29.99506 * 1 2 3 26 26 H 1.09004 * 109.46827 * 149.99472 * 1 2 3 27 27 H 1.09008 * 109.47157 * 60.00041 * 5 4 2 28 28 H 1.09006 * 109.47554 * 299.99766 * 5 4 2 29 29 H 1.09000 * 109.47033 * 305.00159 * 6 5 4 30 30 H 1.09002 * 109.46906 * 185.00146 * 6 5 4 31 31 H 0.97001 * 120.00109 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 33 33 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 34 34 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 35 35 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 36 36 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1783 -1.1625 -0.0005 5 6 3.6282 -1.0864 -0.0011 6 6 4.2131 -2.5002 -0.0010 7 7 3.8599 -3.1748 -1.2525 8 6 4.2697 -4.4393 -1.4754 9 8 4.9330 -5.0199 -0.6379 10 6 3.9143 -5.1189 -2.7369 11 6 3.1556 -4.4462 -3.7024 12 6 2.8206 -5.0715 -4.8664 13 6 3.2482 -6.3930 -5.1018 14 6 2.9092 -7.0424 -6.3079 15 1 3.5304 -7.8418 -6.6839 16 6 1.7658 -6.6495 -7.0183 17 7 0.8440 -5.9354 -6.4291 18 14 1.5606 -7.1475 -8.8070 19 1 1.5564 -8.6288 -8.9111 20 1 0.2765 -6.6116 -9.3258 21 1 2.6856 -6.5984 -9.6059 22 6 4.0158 -7.0641 -4.1295 23 6 4.3408 -6.4327 -2.9660 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 3.9644 -0.5544 0.8890 28 1 3.9638 -0.5540 -0.8911 29 1 3.8076 -3.0611 0.8411 30 1 5.2980 -2.4445 0.0882 31 1 3.3310 -2.7115 -1.9208 32 1 2.8323 -3.4314 -3.5231 33 1 2.2318 -4.5530 -5.6088 34 1 0.0532 -5.6633 -6.9207 35 1 4.3462 -8.0772 -4.3058 36 1 4.9288 -6.9465 -2.2199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816477516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -135.772092 kcal Electronic energy + Delta-G solvation = -20325.925753 eV Core-core repulsion = 16966.586797 eV Total energy + Delta-G solvation = -3359.338956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50681 -40.71236 -38.93959 -37.80007 -35.74241 -35.65532 -32.46725 -31.47312 -31.28059 -30.10283 -27.61263 -24.52041 -23.35237 -22.72143 -22.16655 -21.32255 -19.35756 -18.75985 -18.56879 -17.81716 -17.22381 -17.13778 -16.62244 -16.06833 -15.74155 -15.45316 -15.09233 -14.68920 -14.45868 -14.16780 -13.96501 -13.78957 -13.62428 -13.43686 -13.19742 -13.08605 -12.85257 -12.78265 -12.59652 -12.35269 -11.82534 -11.75896 -11.61631 -11.36145 -11.11714 -10.72829 -10.11149 -9.56782 -9.39303 -8.77872 -6.47945 0.44558 1.15761 1.15999 1.40029 1.45266 1.52950 1.71522 2.12789 2.18910 2.35475 2.79684 3.59607 3.69592 3.81636 3.99768 4.23796 4.27746 4.33015 4.44180 4.45787 4.57735 4.66513 4.75738 4.93167 4.97810 5.03920 5.16383 5.30483 5.42551 5.51510 5.59889 5.82349 5.94514 6.00057 6.23640 6.54612 6.66337 6.69590 6.77971 6.89454 7.41439 8.17320 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.003861 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.373252 B = 7249.906963 C = 8522.676651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.459 3.541 3 O -0.553 6.553 4 O -0.362 6.362 5 C 0.060 3.940 6 C 0.125 3.875 7 N -0.725 5.725 8 C 0.573 3.427 9 O -0.604 6.604 10 C -0.294 4.294 11 C -0.053 4.053 12 C -0.197 4.197 13 C 0.102 3.898 14 C -0.476 4.476 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.799 5.799 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.259 1.259 22 C -0.253 4.253 23 C -0.032 4.032 24 H 0.125 0.875 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.407 0.593 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.297 0.703 35 H 0.104 0.896 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 10.255 5.826 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.305 3.695 3 O -0.444 6.444 4 O -0.279 6.279 5 C -0.014 4.014 6 C 0.002 3.998 7 N -0.378 5.378 8 C 0.367 3.633 9 O -0.489 6.489 10 C -0.298 4.298 11 C -0.072 4.072 12 C -0.216 4.216 13 C 0.099 3.901 14 C -0.503 4.503 15 H 0.103 0.897 16 C -0.180 4.180 17 N -0.423 5.423 18 Si 0.807 3.193 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.183 1.183 22 C -0.272 4.272 23 C -0.051 4.051 24 H 0.144 0.856 25 H 0.131 0.869 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.244 0.756 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.148 10.285 6.421 12.527 hybrid contribution -0.140 -0.085 -0.872 0.887 sum -3.288 10.200 5.548 12.068 Atomic orbital electron populations 1.21769 0.83823 1.07034 1.07399 1.24708 0.93609 0.80665 0.70540 1.90677 1.71941 1.34145 1.47651 1.86600 1.22335 1.35381 1.83592 1.23359 0.76548 0.96785 1.04697 1.21441 1.00495 0.90763 0.87075 1.45739 1.56738 1.14249 1.21035 1.18361 0.77719 0.81132 0.86120 1.90620 1.42876 1.66900 1.48466 1.19185 1.15464 0.97664 0.97525 1.20707 0.95128 0.98248 0.93117 1.21007 1.06524 0.95317 0.98776 1.18132 0.88371 0.91747 0.91825 1.20106 1.08226 1.16839 1.05151 0.89659 1.26899 0.93766 0.92779 1.04547 1.69752 1.06574 1.26419 1.39513 0.85167 0.78904 0.79818 0.75439 1.18326 1.18755 1.18275 1.20871 1.10566 0.99997 0.95784 1.20513 0.95396 0.93480 0.95737 0.85646 0.86865 0.87620 0.87874 0.89959 0.91088 0.88670 0.75615 0.86089 0.86859 0.89168 0.87757 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.41 71.24 0.74 -0.88 16 2 C 0.46 9.38 8.07 71.24 0.57 9.96 16 3 O -0.55 -14.75 16.85 21.95 0.37 -14.38 16 4 O -0.36 -7.98 10.17 -51.49 -0.52 -8.50 16 5 C 0.06 1.22 5.60 71.98 0.40 1.62 16 6 C 0.13 3.11 6.07 86.38 0.52 3.64 16 7 N -0.72 -22.79 5.46 -466.14 -2.54 -25.33 16 8 C 0.57 23.69 7.76 86.72 0.67 24.36 16 9 O -0.60 -28.16 16.32 -4.00 -0.07 -28.22 16 10 C -0.29 -13.30 5.89 -19.94 -0.12 -13.41 16 11 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 12 C -0.20 -9.65 8.63 22.47 0.19 -9.46 16 13 C 0.10 5.29 5.57 -21.28 -0.12 5.17 16 14 C -0.48 -23.89 9.05 23.46 0.21 -23.68 16 15 H 0.09 4.10 7.90 -2.91 -0.02 4.07 16 16 C 0.04 1.80 5.15 85.35 0.44 2.24 16 17 N -0.80 -37.79 10.95 21.87 0.24 -37.55 16 18 Si 0.99 34.41 29.59 68.60 2.03 36.44 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 20 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 21 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 22 C -0.25 -12.47 9.73 22.47 0.22 -12.25 16 23 C -0.03 -1.53 9.52 22.25 0.21 -1.32 16 24 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.10 1.76 8.13 -2.38 -0.02 1.74 16 28 H 0.08 1.63 8.13 -2.38 -0.02 1.61 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.41 11.55 6.47 -92.71 -0.60 10.95 16 32 H 0.12 4.31 6.37 -2.91 -0.02 4.29 16 33 H 0.11 5.62 6.18 -2.91 -0.02 5.61 16 34 H 0.30 12.48 8.29 -92.70 -0.77 11.71 16 35 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -65.44 319.47 4.18 -61.26 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.51 Total: 32.40 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.17 Total: -16.11 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -2.30 Total: -62.88 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.22 Total: -51.10 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -65.44 4.18 -61.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816477516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.514 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds