Wall clock time and date at job start Mon Mar 30 2020 01:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46998 * 2 1 4 4 N 1.46503 * 109.47005 * 120.00040 * 2 1 3 5 5 C 1.34768 * 119.99956 * 274.99942 * 4 2 1 6 6 O 1.21283 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46977 * 180.02562 * 7 5 4 9 9 C 1.37637 * 120.12547 * 264.99579 * 8 7 5 10 10 C 1.38619 * 120.24913 * 180.29699 * 9 8 7 11 11 C 1.38654 * 120.49499 * 359.44683 * 10 9 8 12 12 C 1.37589 * 120.25180 * 0.55779 * 11 10 9 13 13 C 1.40694 * 120.12727 * 85.02080 * 8 7 5 14 14 C 1.41388 * 120.24927 * 359.95455 * 13 8 7 15 15 H 1.08003 * 119.99773 * 334.07854 * 14 13 8 16 16 C 1.39940 * 120.00392 * 154.08554 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.62181 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.63284 * 16 14 13 19 19 H 1.48496 * 109.47262 * 59.99447 * 18 16 14 20 20 H 1.48504 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46694 * 299.99081 * 18 16 14 22 22 C 1.50699 * 109.46680 * 240.00296 * 2 1 3 23 23 O 1.20832 * 119.99504 * 239.99535 * 22 2 1 24 24 O 1.34222 * 120.00364 * 60.00403 * 22 2 1 25 25 H 1.09006 * 109.47687 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47548 * 300.00043 * 1 2 3 27 27 H 1.08996 * 109.47430 * 59.99824 * 1 2 3 28 28 H 0.97001 * 119.99456 * 95.00566 * 4 2 1 29 29 H 1.08998 * 109.47152 * 59.99513 * 7 5 4 30 30 H 1.09000 * 109.46625 * 299.99942 * 7 5 4 31 31 H 1.08002 * 119.87664 * 0.02839 * 9 8 7 32 32 H 1.08000 * 119.74896 * 179.70344 * 10 9 8 33 33 H 1.08006 * 119.86868 * 180.29864 * 11 10 9 34 34 H 1.08001 * 120.12932 * 179.74890 * 12 11 10 35 35 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 36 36 H 0.96697 * 117.00375 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 6 2.6999 0.2395 4.7412 9 6 3.8719 0.8951 5.0426 10 6 3.9224 1.7815 6.1072 11 6 2.7927 2.0268 6.8727 12 6 1.6103 1.3827 6.5897 13 6 1.5487 0.4763 5.5148 14 6 0.3390 -0.1910 5.2143 15 1 0.1481 -0.5364 4.2090 16 6 -0.6111 -0.4040 6.2195 17 7 -0.2703 -0.2865 7.4771 18 14 -2.3658 -0.8562 5.7656 19 1 -2.3664 -2.1264 4.9964 20 1 -3.1689 -1.0269 7.0030 21 1 -2.9568 0.2249 4.9366 22 6 2.0322 -0.7104 -1.2305 23 8 2.7269 -1.6928 -1.1196 24 8 1.7080 -0.2517 -2.4496 25 1 -0.3635 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.2490 -1.6318 1.1525 29 1 3.6491 -1.1205 3.3978 30 1 1.9776 -1.5509 3.8324 31 1 4.7568 0.7149 4.4502 32 1 4.8476 2.2879 6.3394 33 1 2.8422 2.7231 7.6968 34 1 0.7326 1.5723 7.1897 35 1 -0.9289 -0.4337 8.1739 36 1 2.0540 -0.7404 -3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820122591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:47 Heat of formation + Delta-G solvation = -116.477878 kcal Electronic energy + Delta-G solvation = -21229.231052 eV Core-core repulsion = 17870.728756 eV Total energy + Delta-G solvation = -3358.502296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71147 -39.16331 -37.37350 -36.41667 -34.83970 -33.60120 -31.93127 -30.49499 -29.41804 -26.75581 -25.27338 -24.80630 -21.75106 -20.90679 -20.27263 -19.49996 -18.21683 -17.47783 -17.06736 -16.27840 -15.75514 -15.47327 -15.20765 -14.63237 -14.44880 -13.69160 -13.59685 -13.43699 -13.14947 -12.64104 -12.54085 -12.33521 -11.85028 -11.74493 -11.67364 -11.54699 -11.15107 -11.01866 -10.96676 -10.70774 -10.63229 -10.39127 -9.46545 -9.37022 -9.26829 -9.13747 -8.95474 -7.29183 -7.27480 -6.71801 -4.32588 1.92743 2.52950 2.83322 3.01733 3.07135 3.09973 3.25875 3.29706 3.62647 3.94671 4.67992 4.83517 4.95907 5.05922 5.44014 5.62271 5.73625 5.82944 6.03271 6.13126 6.15733 6.21343 6.31343 6.44664 6.53594 6.58607 6.82027 7.10556 7.31802 7.44468 7.59116 7.65605 7.82069 7.95742 8.08741 8.15461 8.33586 8.66233 8.75463 8.93434 9.03608 10.22464 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.005788 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.295529 B = 4836.495207 C = 6142.040296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 H 0.124 0.876 4 N -0.734 5.734 5 C 0.521 3.479 6 O -0.517 6.517 7 C -0.068 4.068 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.130 3.870 14 C -0.457 4.457 15 H 0.074 0.926 16 C 0.077 3.923 17 N -0.795 5.795 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.479 3.521 23 O -0.512 6.512 24 O -0.510 6.510 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.406 0.594 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.280 0.720 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -2.584 -13.146 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 H 0.142 0.858 4 N -0.392 5.392 5 C 0.309 3.691 6 O -0.390 6.390 7 C -0.108 4.108 8 C -0.185 4.185 9 C -0.099 4.099 10 C -0.259 4.259 11 C -0.125 4.125 12 C -0.178 4.178 13 C 0.127 3.873 14 C -0.487 4.487 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.420 5.420 18 Si 0.727 3.273 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.189 1.189 22 C 0.321 3.679 23 O -0.400 6.400 24 O -0.322 6.322 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.242 0.758 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.350 -1.795 -12.476 12.609 hybrid contribution -0.430 -1.024 -0.718 1.323 sum -0.080 -2.820 -13.194 13.492 Atomic orbital electron populations 1.22152 0.91989 1.03207 1.04442 1.20223 0.96194 0.97929 0.80851 0.85809 1.46096 1.70143 1.14667 1.08277 1.21355 0.76498 0.87641 0.83583 1.90690 1.47878 1.16103 1.84304 1.20259 1.01170 0.98937 0.90446 1.19038 0.94301 1.04330 1.00801 1.20309 0.95877 0.96959 0.96728 1.20305 0.97595 1.06562 1.01431 1.20677 0.94109 0.99390 0.98334 1.21287 0.96979 0.98540 1.01026 1.17325 0.91007 0.88967 0.89957 1.19432 1.00243 1.32977 0.96023 0.90807 1.25870 1.00438 0.93240 0.94455 1.69810 1.35652 1.36233 1.00349 0.86460 0.82048 0.79875 0.78893 1.19088 1.20362 1.18870 1.23661 0.76698 0.82441 0.85105 1.90717 1.35852 1.26286 1.87129 1.84522 1.72121 1.58934 1.16587 0.91949 0.89704 0.90588 0.75809 0.90318 0.88303 0.89739 0.89676 0.89598 0.86552 0.90913 0.72998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.42 37.16 0.35 -1.56 16 2 C 0.15 2.01 3.09 -69.08 -0.21 1.80 16 3 H 0.12 1.68 7.58 -51.93 -0.39 1.29 16 4 N -0.73 -10.94 4.95 -54.93 -0.27 -11.22 16 5 C 0.52 9.91 7.43 -10.99 -0.08 9.83 16 6 O -0.52 -11.79 15.70 5.55 0.09 -11.71 16 7 C -0.07 -1.33 5.18 -29.03 -0.15 -1.48 16 8 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 9 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 10 C -0.24 -5.58 10.05 -39.29 -0.39 -5.98 16 11 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.16 -4.23 8.68 -38.87 -0.34 -4.57 16 13 C 0.13 3.44 5.56 -106.83 -0.59 2.85 16 14 C -0.46 -11.86 8.14 -37.75 -0.31 -12.17 16 15 H 0.07 1.85 6.68 -52.48 -0.35 1.50 16 16 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 17 N -0.79 -20.41 10.97 55.55 0.61 -19.80 16 18 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 22 C 0.48 5.50 7.69 36.00 0.28 5.77 16 23 O -0.51 -7.06 16.60 -18.76 -0.31 -7.37 16 24 O -0.51 -4.24 13.33 -39.24 -0.52 -4.76 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 0.75 8.11 -51.93 -0.42 0.32 16 28 H 0.41 5.41 7.79 -40.82 -0.32 5.09 16 29 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 30 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 31 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 35 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 36 H 0.41 1.57 9.10 45.56 0.41 1.99 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -31.74 316.31 -6.88 -38.63 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.43 Total: 11.58 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.78 Total: -13.75 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.34 Total: -31.02 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.75 Total: -23.84 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.74 -6.88 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820122591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.852 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds