Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46998 * 2 1 4 4 N 1.46503 * 109.47005 * 120.00040 * 2 1 3 5 5 C 1.34768 * 119.99956 * 274.99942 * 4 2 1 6 6 O 1.21283 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46977 * 180.02562 * 7 5 4 9 9 C 1.37637 * 120.12547 * 264.99579 * 8 7 5 10 10 C 1.38619 * 120.24913 * 180.29699 * 9 8 7 11 11 C 1.38654 * 120.49499 * 359.44683 * 10 9 8 12 12 C 1.37589 * 120.25180 * 0.55779 * 11 10 9 13 13 C 1.40694 * 120.12727 * 85.02080 * 8 7 5 14 14 C 1.41388 * 120.24927 * 359.95455 * 13 8 7 15 15 H 1.08003 * 119.99773 * 334.07854 * 14 13 8 16 16 C 1.39940 * 120.00392 * 154.08554 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.62181 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.63284 * 16 14 13 19 19 H 1.48496 * 109.47262 * 59.99447 * 18 16 14 20 20 H 1.48504 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46694 * 299.99081 * 18 16 14 22 22 C 1.50699 * 109.46680 * 240.00296 * 2 1 3 23 23 O 1.20832 * 119.99504 * 239.99535 * 22 2 1 24 24 O 1.34222 * 120.00364 * 60.00403 * 22 2 1 25 25 H 1.09006 * 109.47687 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47548 * 300.00043 * 1 2 3 27 27 H 1.08996 * 109.47430 * 59.99824 * 1 2 3 28 28 H 0.97001 * 119.99456 * 95.00566 * 4 2 1 29 29 H 1.08998 * 109.47152 * 59.99513 * 7 5 4 30 30 H 1.09000 * 109.46625 * 299.99942 * 7 5 4 31 31 H 1.08002 * 119.87664 * 0.02839 * 9 8 7 32 32 H 1.08000 * 119.74896 * 179.70344 * 10 9 8 33 33 H 1.08006 * 119.86868 * 180.29864 * 11 10 9 34 34 H 1.08001 * 120.12932 * 179.74890 * 12 11 10 35 35 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 36 36 H 0.96697 * 117.00375 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1583 2.4117 7 6 2.6499 -0.7287 3.5874 8 6 2.6999 0.2395 4.7412 9 6 3.8719 0.8951 5.0426 10 6 3.9224 1.7815 6.1072 11 6 2.7927 2.0268 6.8727 12 6 1.6103 1.3827 6.5897 13 6 1.5487 0.4763 5.5148 14 6 0.3390 -0.1910 5.2143 15 1 0.1481 -0.5364 4.2090 16 6 -0.6111 -0.4040 6.2195 17 7 -0.2703 -0.2865 7.4771 18 14 -2.3658 -0.8562 5.7656 19 1 -2.3664 -2.1264 4.9964 20 1 -3.1689 -1.0269 7.0030 21 1 -2.9568 0.2249 4.9366 22 6 2.0322 -0.7104 -1.2305 23 8 2.7269 -1.6928 -1.1196 24 8 1.7080 -0.2517 -2.4496 25 1 -0.3635 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.2490 -1.6318 1.1525 29 1 3.6491 -1.1205 3.3978 30 1 1.9776 -1.5509 3.8324 31 1 4.7568 0.7149 4.4502 32 1 4.8476 2.2879 6.3394 33 1 2.8422 2.7231 7.6968 34 1 0.7326 1.5723 7.1897 35 1 -0.9289 -0.4337 8.1739 36 1 2.0540 -0.7404 -3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820122591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = -137.816901 kcal Electronic energy + Delta-G solvation = -21230.156382 eV Core-core repulsion = 17870.728756 eV Total energy + Delta-G solvation = -3359.427625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.70912 -40.58408 -39.11897 -37.28011 -36.09762 -35.47464 -33.57837 -31.82616 -31.28811 -28.41283 -26.89073 -26.04695 -22.98173 -22.76862 -21.60238 -21.10596 -19.17783 -19.03620 -18.53680 -17.49385 -17.23633 -16.84606 -16.37262 -16.17130 -16.12403 -15.37462 -15.11019 -14.73350 -14.48514 -14.33859 -13.79587 -13.53108 -13.34854 -13.32190 -12.88744 -12.78473 -12.73141 -12.65120 -12.55832 -12.46435 -12.10396 -11.63106 -11.30368 -11.19439 -11.00336 -10.84978 -10.25386 -9.20500 -9.14924 -8.57227 -6.26879 1.00680 1.02497 1.14589 1.37887 1.47907 1.56478 1.62591 1.79850 2.21786 2.44611 2.81163 3.74661 3.92021 3.95928 4.12230 4.18106 4.41911 4.45442 4.62632 4.67957 4.72778 4.77652 4.82966 5.07959 5.17606 5.22599 5.35176 5.39444 5.48868 5.57018 5.79559 6.06006 6.18660 6.23875 6.44295 6.52050 6.76146 6.88190 7.01583 7.13571 7.33004 8.39187 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.005788 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.295529 B = 4836.495207 C = 6142.040296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 H 0.118 0.882 4 N -0.719 5.719 5 C 0.526 3.474 6 O -0.562 6.562 7 C -0.069 4.069 8 C -0.189 4.189 9 C -0.091 4.091 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.193 4.193 13 C 0.098 3.902 14 C -0.482 4.482 15 H 0.074 0.926 16 C 0.036 3.964 17 N -0.827 5.827 18 Si 0.970 3.030 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.268 1.268 22 C 0.495 3.505 23 O -0.536 6.536 24 O -0.498 6.498 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.416 0.584 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.285 0.715 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -3.473 -15.204 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.135 0.865 4 N -0.376 5.376 5 C 0.315 3.685 6 O -0.439 6.439 7 C -0.109 4.109 8 C -0.191 4.191 9 C -0.109 4.109 10 C -0.262 4.262 11 C -0.135 4.135 12 C -0.213 4.213 13 C 0.096 3.904 14 C -0.511 4.511 15 H 0.092 0.908 16 C -0.178 4.178 17 N -0.453 5.453 18 Si 0.791 3.209 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.193 1.193 22 C 0.338 3.662 23 O -0.426 6.426 24 O -0.312 6.312 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.253 0.747 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 0.591 -2.718 -14.588 14.850 hybrid contribution -0.400 -0.712 -0.166 0.833 sum 0.191 -3.430 -14.754 15.148 Atomic orbital electron populations 1.22094 0.91088 1.03754 1.04249 1.20321 0.96932 0.97641 0.80966 0.86472 1.45836 1.68784 1.14961 1.07977 1.21104 0.76056 0.86938 0.84413 1.90676 1.50129 1.17937 1.85117 1.20274 1.03210 0.97908 0.89463 1.19506 0.93767 1.04465 1.01355 1.20739 0.96768 0.96481 0.96916 1.20705 0.98212 1.06341 1.00963 1.20947 0.93921 0.99503 0.99149 1.21299 0.97374 1.00400 1.02183 1.17717 0.92419 0.89543 0.90770 1.19610 1.01153 1.34034 0.96341 0.90779 1.26668 1.04147 0.92866 0.94123 1.69878 1.37075 1.37031 1.01303 0.85435 0.76861 0.79740 0.78839 1.17755 1.19373 1.19267 1.23075 0.76037 0.81601 0.85515 1.90723 1.37002 1.27281 1.87586 1.84456 1.71618 1.58842 1.16280 0.91007 0.92547 0.88103 0.74657 0.87042 0.88227 0.86643 0.86781 0.87749 0.88533 0.90403 0.70272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.42 71.98 0.68 -2.76 16 2 C 0.15 3.60 3.09 44.24 0.14 3.74 16 3 H 0.12 3.08 7.58 -2.39 -0.02 3.06 16 4 N -0.72 -20.47 4.95 -446.10 -2.21 -22.68 16 5 C 0.53 19.72 7.43 87.66 0.65 20.37 16 6 O -0.56 -25.87 15.70 -3.04 -0.05 -25.92 16 7 C -0.07 -2.63 5.18 29.10 0.15 -2.48 16 8 C -0.19 -9.05 4.43 -19.41 -0.09 -9.13 16 9 C -0.09 -4.09 9.66 22.22 0.21 -3.88 16 10 C -0.24 -11.08 10.05 22.46 0.23 -10.85 16 11 C -0.12 -5.76 10.02 22.22 0.22 -5.54 16 12 C -0.19 -10.66 8.68 22.73 0.20 -10.46 16 13 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 14 C -0.48 -25.66 8.14 23.46 0.19 -25.47 16 15 H 0.07 3.79 6.68 -2.91 -0.02 3.77 16 16 C 0.04 1.85 5.16 85.26 0.44 2.29 16 17 N -0.83 -43.72 10.97 21.82 0.24 -43.48 16 18 Si 0.97 38.60 29.59 68.60 2.03 40.63 16 19 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 C 0.50 10.09 7.69 71.24 0.55 10.64 16 23 O -0.54 -13.46 16.60 21.94 0.36 -13.09 16 24 O -0.50 -6.60 13.33 -51.34 -0.68 -7.29 16 25 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.10 1.73 8.11 -2.39 -0.02 1.71 16 28 H 0.42 10.30 7.79 -92.71 -0.72 9.58 16 29 H 0.11 3.43 8.05 -2.39 -0.02 3.42 16 30 H 0.10 3.77 7.06 -2.39 -0.02 3.75 16 31 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 32 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.10 5.57 6.22 -2.91 -0.02 5.56 16 35 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 36 H 0.43 1.70 9.10 -74.06 -0.67 1.03 16 Total: -1.00 -70.09 316.31 2.88 -67.21 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.27 Total: 32.95 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.45 Total: -28.33 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: -1.97 Total: -66.17 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.37 Total: -46.30 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -70.09 2.88 -67.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820122591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.608 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds