Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 N 1.46497 * 109.47110 * 239.99727 * 2 1 3 5 5 C 1.34780 * 119.99887 * 85.00055 * 4 2 1 6 6 O 1.21276 * 119.99901 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99976 * 179.72266 * 5 4 2 8 8 C 1.50698 * 109.47242 * 179.97438 * 7 5 4 9 9 C 1.37641 * 120.13256 * 265.00387 * 8 7 5 10 10 C 1.38606 * 120.24913 * 179.97438 * 9 8 7 11 11 C 1.38663 * 120.50512 * 0.02562 * 10 9 8 12 12 C 1.37598 * 120.24335 * 0.02562 * 11 10 9 13 13 C 1.40700 * 120.12498 * 84.72937 * 8 7 5 14 14 C 1.41398 * 120.24589 * 359.97438 * 13 8 7 15 15 H 1.08004 * 119.99534 * 333.89952 * 14 13 8 16 16 C 1.39944 * 120.00279 * 153.89400 * 14 13 8 17 17 N 1.30828 * 119.99966 * 343.72466 * 16 14 13 18 18 Si 1.86800 * 120.00082 * 163.72015 * 16 14 13 19 19 H 1.48501 * 109.46929 * 60.00254 * 18 16 14 20 20 H 1.48494 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46900 * 300.00320 * 18 16 14 22 22 C 1.50701 * 109.47087 * 120.00075 * 2 1 3 23 23 O 1.20821 * 120.00194 * 119.99603 * 22 2 1 24 24 O 1.34232 * 119.99739 * 300.00261 * 22 2 1 25 25 H 1.09001 * 109.47114 * 300.00295 * 1 2 3 26 26 H 1.09001 * 109.46962 * 59.99934 * 1 2 3 27 27 H 1.08992 * 109.47425 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00502 * 265.00615 * 4 2 1 29 29 H 1.08997 * 109.47383 * 300.00561 * 7 5 4 30 30 H 1.08999 * 109.46836 * 60.00392 * 7 5 4 31 31 H 1.07997 * 119.87377 * 0.02562 * 9 8 7 32 32 H 1.08004 * 119.74971 * 180.02562 * 10 9 8 33 33 H 1.07997 * 119.88011 * 180.02562 * 11 10 9 34 34 H 1.08004 * 120.12267 * 179.97438 * 12 11 10 35 35 H 0.96996 * 119.99922 * 179.97438 * 17 16 14 36 36 H 0.96700 * 117.00004 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1585 -2.4115 7 6 2.6553 -0.7272 -3.5860 8 6 2.7042 0.2406 -4.7401 9 6 1.6506 0.3174 -5.6225 10 6 1.6928 1.2070 -6.6846 11 6 2.7942 2.0284 -6.8714 12 6 3.8593 1.9679 -6.0023 13 6 3.8245 1.0732 -4.9165 14 6 4.9100 1.0076 -4.0128 15 1 4.7489 0.6727 -2.9987 16 6 6.1931 1.3766 -4.4323 17 7 6.4612 1.4736 -5.7092 18 14 7.5230 1.7306 -3.1692 19 1 7.7512 0.5211 -2.3384 20 1 8.7820 2.0980 -3.8657 21 1 7.0929 2.8547 -2.2994 22 6 2.0323 -0.7104 1.2305 23 8 2.7269 -1.6928 1.1196 24 8 1.7080 -0.2518 2.4496 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 3.6556 -1.1152 -3.3941 30 1 1.9867 -1.5521 -3.8322 31 1 0.7875 -0.3173 -5.4864 32 1 0.8614 1.2609 -7.3719 33 1 2.8162 2.7182 -7.7021 34 1 4.7164 2.6082 -6.1500 35 1 7.3504 1.7296 -5.9999 36 1 2.0540 -0.7405 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820122592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -116.244521 kcal Electronic energy + Delta-G solvation = -21225.142644 eV Core-core repulsion = 17866.650467 eV Total energy + Delta-G solvation = -3358.492177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69220 -39.15993 -37.37115 -36.39205 -34.84682 -33.59543 -31.93476 -30.50799 -29.41695 -26.76709 -25.26915 -24.82012 -21.74480 -20.89884 -20.27101 -19.49785 -18.19093 -17.46847 -17.06881 -16.28828 -15.74637 -15.42350 -15.20932 -14.69803 -14.42792 -13.67176 -13.60674 -13.43674 -13.13544 -12.68008 -12.53477 -12.41686 -11.84797 -11.71255 -11.69874 -11.53910 -11.14725 -11.01326 -10.95960 -10.69373 -10.62846 -10.38378 -9.46416 -9.37056 -9.26651 -9.12920 -8.95733 -7.29041 -7.27136 -6.71104 -4.32069 1.95634 2.53654 2.84379 3.02996 3.08085 3.11957 3.26493 3.30430 3.61465 3.96179 4.68537 4.82775 4.92228 5.07174 5.41331 5.56638 5.69920 5.82029 6.02452 6.04667 6.14069 6.23099 6.30750 6.45105 6.53439 6.58400 6.82359 7.11374 7.32055 7.44725 7.61409 7.66064 7.82270 7.95628 8.09493 8.15556 8.34018 8.66850 8.75620 8.94125 9.03937 10.22969 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.006080 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.665650 B = 4604.058056 C = 6057.782889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.126 0.874 4 N -0.734 5.734 5 C 0.521 3.479 6 O -0.516 6.516 7 C -0.068 4.068 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.130 3.870 14 C -0.457 4.457 15 H 0.073 0.927 16 C 0.078 3.922 17 N -0.795 5.795 18 Si 0.902 3.098 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.264 1.264 22 C 0.479 3.521 23 O -0.510 6.510 24 O -0.511 6.511 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.406 0.594 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.280 0.720 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 -4.542 11.199 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.143 0.857 4 N -0.392 5.392 5 C 0.309 3.691 6 O -0.389 6.389 7 C -0.108 4.108 8 C -0.185 4.185 9 C -0.098 4.098 10 C -0.259 4.259 11 C -0.125 4.125 12 C -0.178 4.178 13 C 0.127 3.873 14 C -0.487 4.487 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.420 5.420 18 Si 0.727 3.273 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.189 1.189 22 C 0.320 3.680 23 O -0.397 6.397 24 O -0.322 6.322 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.242 0.758 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.743 -3.673 10.610 13.097 hybrid contribution 1.089 -0.623 1.125 1.685 sum -5.653 -4.296 11.735 13.716 Atomic orbital electron populations 1.22123 0.92153 1.02953 1.04253 1.20231 0.95970 0.98198 0.80943 0.85681 1.46096 1.70177 1.14653 1.08247 1.21359 0.76313 0.87641 0.83781 1.90688 1.47906 1.15796 1.84534 1.20254 1.02233 0.97545 0.90755 1.19040 0.98571 1.02493 0.98398 1.20294 0.96047 0.98079 0.95407 1.20302 0.99424 1.04347 1.01846 1.20681 0.94668 0.98682 0.98494 1.21296 0.97995 1.01011 0.97515 1.17330 0.90660 0.87988 0.91295 1.19446 0.91681 1.39328 0.98226 0.90854 1.25867 0.99928 0.92650 0.95540 1.69811 1.22425 1.34402 1.15401 0.86462 0.79388 0.80061 0.81403 1.19051 1.20310 1.18902 1.23630 0.76806 0.82462 0.85094 1.90724 1.35638 1.26292 1.87090 1.84518 1.72113 1.59005 1.16598 0.90539 0.90072 0.92058 0.75819 0.88300 0.90342 0.89730 0.89675 0.89594 0.86530 0.90909 0.72978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.42 37.16 0.35 -1.33 16 2 C 0.15 1.99 3.09 -69.08 -0.21 1.78 16 3 H 0.13 1.78 7.58 -51.93 -0.39 1.39 16 4 N -0.73 -10.95 4.95 -54.93 -0.27 -11.23 16 5 C 0.52 9.92 7.40 -10.98 -0.08 9.84 16 6 O -0.52 -11.80 15.70 5.56 0.09 -11.71 16 7 C -0.07 -1.33 5.18 -29.04 -0.15 -1.48 16 8 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 9 C -0.08 -1.83 9.66 -39.66 -0.38 -2.21 16 10 C -0.24 -5.56 10.05 -39.29 -0.39 -5.96 16 11 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.16 -4.25 8.69 -38.87 -0.34 -4.59 16 13 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 14 C -0.46 -12.11 8.14 -37.74 -0.31 -12.41 16 15 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 16 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 17 N -0.79 -20.65 10.96 55.55 0.61 -20.04 16 18 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 22 C 0.48 5.68 7.69 36.01 0.28 5.95 16 23 O -0.51 -7.34 16.60 -18.75 -0.31 -7.65 16 24 O -0.51 -4.41 13.33 -39.26 -0.52 -4.94 16 25 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.41 5.41 7.79 -40.82 -0.32 5.09 16 29 H 0.10 1.93 7.08 -51.93 -0.37 1.56 16 30 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 31 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.12 3.21 6.20 -52.48 -0.33 2.88 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.41 1.74 9.10 45.56 0.41 2.16 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -32.16 316.28 -6.88 -39.05 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -3.43 Total: 11.12 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.78 Total: -13.51 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.34 Total: -31.27 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.75 Total: -24.30 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.16 -6.88 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820122592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.196 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds