Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 N 1.46497 * 109.47110 * 239.99727 * 2 1 3 5 5 C 1.34780 * 119.99887 * 85.00055 * 4 2 1 6 6 O 1.21276 * 119.99901 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99976 * 179.72266 * 5 4 2 8 8 C 1.50698 * 109.47242 * 179.97438 * 7 5 4 9 9 C 1.37641 * 120.13256 * 265.00387 * 8 7 5 10 10 C 1.38606 * 120.24913 * 179.97438 * 9 8 7 11 11 C 1.38663 * 120.50512 * 0.02562 * 10 9 8 12 12 C 1.37598 * 120.24335 * 0.02562 * 11 10 9 13 13 C 1.40700 * 120.12498 * 84.72937 * 8 7 5 14 14 C 1.41398 * 120.24589 * 359.97438 * 13 8 7 15 15 H 1.08004 * 119.99534 * 333.89952 * 14 13 8 16 16 C 1.39944 * 120.00279 * 153.89400 * 14 13 8 17 17 N 1.30828 * 119.99966 * 343.72466 * 16 14 13 18 18 Si 1.86800 * 120.00082 * 163.72015 * 16 14 13 19 19 H 1.48501 * 109.46929 * 60.00254 * 18 16 14 20 20 H 1.48494 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46900 * 300.00320 * 18 16 14 22 22 C 1.50701 * 109.47087 * 120.00075 * 2 1 3 23 23 O 1.20821 * 120.00194 * 119.99603 * 22 2 1 24 24 O 1.34232 * 119.99739 * 300.00261 * 22 2 1 25 25 H 1.09001 * 109.47114 * 300.00295 * 1 2 3 26 26 H 1.09001 * 109.46962 * 59.99934 * 1 2 3 27 27 H 1.08992 * 109.47425 * 180.02562 * 1 2 3 28 28 H 0.96999 * 120.00502 * 265.00615 * 4 2 1 29 29 H 1.08997 * 109.47383 * 300.00561 * 7 5 4 30 30 H 1.08999 * 109.46836 * 60.00392 * 7 5 4 31 31 H 1.07997 * 119.87377 * 0.02562 * 9 8 7 32 32 H 1.08004 * 119.74971 * 180.02562 * 10 9 8 33 33 H 1.07997 * 119.88011 * 180.02562 * 11 10 9 34 34 H 1.08004 * 120.12267 * 179.97438 * 12 11 10 35 35 H 0.96996 * 119.99922 * 179.97438 * 17 16 14 36 36 H 0.96700 * 117.00004 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1585 -2.4115 7 6 2.6553 -0.7272 -3.5860 8 6 2.7042 0.2406 -4.7401 9 6 1.6506 0.3174 -5.6225 10 6 1.6928 1.2070 -6.6846 11 6 2.7942 2.0284 -6.8714 12 6 3.8593 1.9679 -6.0023 13 6 3.8245 1.0732 -4.9165 14 6 4.9100 1.0076 -4.0128 15 1 4.7489 0.6727 -2.9987 16 6 6.1931 1.3766 -4.4323 17 7 6.4612 1.4736 -5.7092 18 14 7.5230 1.7306 -3.1692 19 1 7.7512 0.5211 -2.3384 20 1 8.7820 2.0980 -3.8657 21 1 7.0929 2.8547 -2.2994 22 6 2.0323 -0.7104 1.2305 23 8 2.7269 -1.6928 1.1196 24 8 1.7080 -0.2518 2.4496 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 3.6556 -1.1152 -3.3941 30 1 1.9867 -1.5521 -3.8322 31 1 0.7875 -0.3173 -5.4864 32 1 0.8614 1.2609 -7.3719 33 1 2.8162 2.7182 -7.7021 34 1 4.7164 2.6082 -6.1500 35 1 7.3504 1.7296 -5.9999 36 1 2.0540 -0.7405 3.2089 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820122592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -138.058905 kcal Electronic energy + Delta-G solvation = -21226.088587 eV Core-core repulsion = 17866.650467 eV Total energy + Delta-G solvation = -3359.438120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71491 -40.58889 -39.12224 -37.28952 -36.10019 -35.49030 -33.57949 -31.81489 -31.29697 -28.41849 -26.88647 -26.05357 -22.98677 -22.76993 -21.60132 -21.10823 -19.18705 -19.04635 -18.55019 -17.54756 -17.16182 -16.86388 -16.44218 -16.17131 -16.12338 -15.38885 -15.08259 -14.72175 -14.47415 -14.36621 -13.83477 -13.52100 -13.36765 -13.29472 -12.91551 -12.77584 -12.74603 -12.66363 -12.55594 -12.47658 -12.12303 -11.63816 -11.30696 -11.20440 -11.02646 -10.84938 -10.25191 -9.20701 -9.15076 -8.59184 -6.28872 0.99569 1.02012 1.14010 1.34473 1.44318 1.53513 1.60106 1.83944 2.19139 2.43038 2.79232 3.73919 3.92486 3.96001 4.12870 4.18254 4.42347 4.46002 4.63178 4.69927 4.73565 4.79416 4.83119 5.07989 5.17950 5.20790 5.35244 5.39221 5.48233 5.56507 5.78817 6.05292 6.18012 6.23668 6.43565 6.52017 6.75425 6.86881 7.00118 7.12635 7.33029 8.36980 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.006080 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.665650 B = 4604.058056 C = 6057.782889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.145 3.855 3 H 0.111 0.889 4 N -0.719 5.719 5 C 0.526 3.474 6 O -0.561 6.561 7 C -0.069 4.069 8 C -0.188 4.188 9 C -0.089 4.089 10 C -0.241 4.241 11 C -0.117 4.117 12 C -0.193 4.193 13 C 0.096 3.904 14 C -0.484 4.484 15 H 0.069 0.931 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.265 1.265 21 H -0.269 1.269 22 C 0.492 3.508 23 O -0.537 6.537 24 O -0.499 6.499 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.415 0.585 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.286 0.714 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 -5.693 12.740 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.039 3.961 3 H 0.128 0.872 4 N -0.376 5.376 5 C 0.315 3.685 6 O -0.438 6.438 7 C -0.109 4.109 8 C -0.190 4.190 9 C -0.107 4.107 10 C -0.260 4.260 11 C -0.135 4.135 12 C -0.212 4.212 13 C 0.094 3.906 14 C -0.514 4.514 15 H 0.087 0.913 16 C -0.177 4.177 17 N -0.452 5.452 18 Si 0.789 3.211 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.194 1.194 22 C 0.335 3.665 23 O -0.427 6.427 24 O -0.312 6.312 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.253 0.747 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -7.828 -4.861 12.197 15.287 hybrid contribution 1.290 -0.290 0.676 1.485 sum -6.538 -5.151 12.873 15.329 Atomic orbital electron populations 1.22060 0.90101 1.03983 1.04420 1.20370 0.97571 0.97343 0.80842 0.87155 1.45841 1.68860 1.14949 1.07919 1.21105 0.75852 0.86914 0.84656 1.90673 1.50271 1.17551 1.85342 1.20272 1.03116 0.97598 0.89869 1.19515 0.97747 1.02142 0.99610 1.20740 0.96795 0.98323 0.94817 1.20729 0.99614 1.03400 1.02252 1.20957 0.94547 0.99383 0.98648 1.21299 0.98586 1.02070 0.99292 1.17718 0.92123 0.88965 0.91774 1.19590 0.92614 1.41067 0.98139 0.91253 1.26621 1.01726 0.92074 0.97298 1.69871 1.23235 1.35132 1.16949 0.85476 0.76985 0.79756 0.78894 1.18161 1.18964 1.19421 1.23183 0.76073 0.81646 0.85630 1.90727 1.36905 1.27501 1.87595 1.84456 1.71596 1.58873 1.16287 0.88370 0.91894 0.90548 0.74669 0.88693 0.86575 0.86277 0.86597 0.87702 0.88592 0.90366 0.70339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.42 71.98 0.68 -2.19 16 2 C 0.15 3.57 3.09 44.25 0.14 3.70 16 3 H 0.11 3.10 7.58 -2.39 -0.02 3.08 16 4 N -0.72 -20.56 4.95 -446.10 -2.21 -22.77 16 5 C 0.53 19.75 7.40 87.66 0.65 20.40 16 6 O -0.56 -25.90 15.70 -3.02 -0.05 -25.95 16 7 C -0.07 -2.63 5.18 29.10 0.15 -2.48 16 8 C -0.19 -8.99 4.43 -19.40 -0.09 -9.08 16 9 C -0.09 -3.92 9.66 22.22 0.21 -3.71 16 10 C -0.24 -10.83 10.05 22.46 0.23 -10.60 16 11 C -0.12 -5.75 10.02 22.22 0.22 -5.52 16 12 C -0.19 -10.70 8.69 22.73 0.20 -10.50 16 13 C 0.10 5.30 5.56 -21.29 -0.12 5.18 16 14 C -0.48 -26.44 8.14 23.46 0.19 -26.25 16 15 H 0.07 3.70 6.67 -2.91 -0.02 3.68 16 16 C 0.04 1.94 5.16 85.26 0.44 2.38 16 17 N -0.83 -44.27 10.96 21.83 0.24 -44.03 16 18 Si 0.97 39.92 29.59 68.60 2.03 41.95 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 C 0.49 10.60 7.69 71.24 0.55 11.15 16 23 O -0.54 -14.41 16.60 21.98 0.36 -14.04 16 24 O -0.50 -7.11 13.33 -51.44 -0.69 -7.80 16 25 H 0.10 1.48 8.11 -2.39 -0.02 1.46 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.42 10.35 7.79 -92.71 -0.72 9.63 16 29 H 0.09 3.69 7.08 -2.39 -0.02 3.68 16 30 H 0.12 3.45 8.05 -2.39 -0.02 3.44 16 31 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 32 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.10 5.58 6.20 -2.91 -0.02 5.56 16 35 H 0.29 13.96 8.30 -92.71 -0.77 13.20 16 36 H 0.43 2.22 9.10 -74.06 -0.67 1.55 16 Total: -1.00 -71.33 316.28 2.88 -68.46 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.27 Total: 31.70 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.45 Total: -27.53 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -1.97 Total: -66.80 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.37 Total: -47.79 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -71.33 2.88 -68.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820122592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.602 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds