Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99673 * 2 1 4 4 C 1.50691 * 109.47343 * 269.99651 * 3 2 1 5 5 O 1.20835 * 119.99870 * 0.02562 * 4 3 2 6 6 O 1.34225 * 120.00479 * 179.97438 * 4 3 2 7 7 C 1.34773 * 120.00061 * 179.97438 * 2 1 3 8 8 O 1.21282 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08995 * 109.47181 * 269.99950 * 1 2 3 25 25 H 1.09006 * 109.47212 * 30.00135 * 1 2 3 26 26 H 1.09002 * 109.46759 * 149.99698 * 1 2 3 27 27 H 1.09005 * 109.47035 * 30.00183 * 3 2 1 28 28 H 1.08998 * 109.46561 * 149.99684 * 3 2 1 29 29 H 0.96697 * 117.00481 * 179.97438 * 6 4 3 30 30 H 1.09001 * 109.46892 * 59.99768 * 9 7 2 31 31 H 1.08991 * 109.47294 * 299.99778 * 9 7 2 32 32 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 33 33 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 34 34 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 35 35 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 36 36 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4207 5 8 2.0558 1.0240 -2.3392 6 8 3.1080 2.8470 -1.6660 7 6 2.1389 -1.1672 0.0005 8 8 3.3517 -1.1670 0.0001 9 6 1.3855 -2.4722 0.0005 10 6 2.3648 -3.6177 0.0005 11 6 2.7397 -4.2061 -1.1860 12 6 3.6353 -5.2641 -1.1883 13 6 4.1685 -5.7373 0.0010 14 6 3.8127 -5.1603 1.1984 15 6 2.9043 -4.0855 1.2127 16 6 2.5319 -3.4842 2.4372 17 1 2.1937 -2.4587 2.4542 18 6 2.6018 -4.2177 3.6268 19 7 2.5176 -5.5230 3.5964 20 14 2.8153 -3.3334 5.2583 21 1 2.8596 -4.3292 6.3591 22 1 4.0821 -2.5589 5.2395 23 1 1.6731 -2.4090 5.4734 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6083 2.0285 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.2455 3.0842 -2.5933 30 1 0.7591 -2.5301 -0.8897 31 1 0.7585 -2.5298 0.8902 32 1 2.3311 -3.8451 -2.1182 33 1 3.9201 -5.7231 -2.1234 34 1 4.8657 -6.5620 -0.0126 35 1 4.2295 -5.5303 2.1234 36 1 2.3225 -5.9770 2.7618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820562209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = -109.997809 kcal Electronic energy + Delta-G solvation = -21526.343485 eV Core-core repulsion = 18168.122186 eV Total energy + Delta-G solvation = -3358.221299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47193 -39.22649 -37.57025 -36.17526 -35.09275 -33.82042 -31.95286 -29.44915 -29.15930 -26.92061 -25.89290 -24.80592 -22.14853 -20.90455 -20.20765 -18.76996 -18.21522 -17.66078 -16.86232 -16.75357 -15.88192 -15.47604 -14.98821 -14.82947 -14.13937 -14.08376 -13.65475 -13.11361 -12.96456 -12.73956 -12.52235 -12.30439 -12.18860 -11.97890 -11.65043 -11.52469 -11.21678 -11.16791 -10.82365 -10.70264 -10.44231 -10.37322 -9.60836 -9.35756 -9.31505 -8.93107 -8.64692 -7.52187 -7.47483 -7.09507 -4.39394 2.17558 2.59277 2.82642 2.89188 3.16504 3.21838 3.30800 3.38677 3.49799 4.04155 4.61203 4.81951 5.08610 5.19109 5.21422 5.41983 5.53674 5.68344 5.72001 5.92845 6.03540 6.22284 6.34599 6.39941 6.41503 6.50612 6.70714 7.04013 7.24341 7.43964 7.54531 7.75123 7.83875 7.85755 7.89689 7.99069 8.23969 8.38079 8.66475 8.82028 8.95817 10.09952 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.006131 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.406903 B = 4566.196383 C = 5622.215609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.617 5.617 3 C 0.126 3.874 4 C 0.459 3.541 5 O -0.506 6.506 6 O -0.520 6.520 7 C 0.523 3.477 8 O -0.515 6.515 9 C -0.064 4.064 10 C -0.187 4.187 11 C -0.068 4.068 12 C -0.252 4.252 13 C -0.086 4.086 14 C -0.216 4.216 15 C 0.117 3.883 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.040 3.960 19 N -0.799 5.799 20 Si 1.060 2.940 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.407 0.593 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 12.646 -3.676 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.354 5.354 3 C 0.000 4.000 4 C 0.299 3.701 5 O -0.393 6.393 6 O -0.332 6.332 7 C 0.313 3.687 8 O -0.388 6.388 9 C -0.104 4.104 10 C -0.189 4.189 11 C -0.086 4.086 12 C -0.272 4.272 13 C -0.104 4.104 14 C -0.235 4.235 15 C 0.114 3.886 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.181 4.181 19 N -0.422 5.422 20 Si 0.884 3.116 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.202 1.202 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.266 0.734 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.486 12.000 -1.880 12.948 hybrid contribution -0.096 0.510 -2.521 2.574 sum -4.582 12.510 -4.401 14.031 Atomic orbital electron populations 1.21792 0.78925 1.03302 1.01894 1.47776 1.07095 1.04471 1.76076 1.20755 1.01725 0.87874 0.89623 1.24448 0.73887 0.77763 0.94008 1.90722 1.48228 1.53501 1.46832 1.84529 1.71161 1.41294 1.36184 1.21374 0.88460 0.84896 0.73924 1.90681 1.14208 1.86817 1.47062 1.20257 0.97745 0.89569 1.02823 1.19032 1.04652 1.01434 0.93801 1.20382 0.96935 0.95768 0.95529 1.20266 1.07227 1.03429 0.96245 1.20606 0.98378 0.98161 0.93283 1.21135 1.03165 1.02633 0.96568 1.17392 0.88755 0.90410 0.92073 1.20424 1.41186 1.00562 0.92366 0.91029 1.26923 0.91476 0.95274 1.04456 1.70449 1.28608 1.09612 1.33548 0.83714 0.77986 0.75844 0.74051 1.19894 1.20047 1.20235 0.92071 0.91713 0.90399 0.86472 0.85628 0.73450 0.90367 0.88415 0.89589 0.89448 0.89376 0.87732 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.24 59.85 0.61 1.55 16 2 N -0.62 -9.43 2.36 -182.95 -0.43 -9.86 16 3 C 0.13 1.60 6.00 -5.19 -0.03 1.57 16 4 C 0.46 6.23 8.40 36.00 0.30 6.53 16 5 O -0.51 -8.72 17.19 -18.76 -0.32 -9.04 16 6 O -0.52 -5.33 13.42 -39.24 -0.53 -5.85 16 7 C 0.52 10.60 7.30 -10.99 -0.08 10.52 16 8 O -0.51 -12.61 15.61 5.56 0.09 -12.52 16 9 C -0.06 -1.30 3.73 -29.03 -0.11 -1.41 16 10 C -0.19 -4.59 4.43 -103.91 -0.46 -5.06 16 11 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 16 12 C -0.25 -5.97 10.05 -39.29 -0.39 -6.37 16 13 C -0.09 -2.10 10.02 -39.66 -0.40 -2.49 16 14 C -0.22 -5.73 7.95 -38.87 -0.31 -6.04 16 15 C 0.12 3.12 5.30 -106.82 -0.57 2.55 16 16 C -0.52 -13.57 8.08 -37.74 -0.30 -13.88 16 17 H 0.07 1.83 6.73 -52.49 -0.35 1.48 16 18 C 0.04 1.02 4.94 -17.34 -0.09 0.94 16 19 N -0.80 -21.13 12.31 55.55 0.68 -20.44 16 20 Si 1.06 21.72 30.00 -169.99 -5.10 16.62 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 26 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 27 H 0.12 0.98 8.07 -51.93 -0.42 0.56 16 28 H 0.13 1.73 7.42 -51.93 -0.39 1.34 16 29 H 0.41 2.53 9.10 45.56 0.41 2.95 16 30 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 31 H 0.10 1.90 7.02 -51.93 -0.36 1.54 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.10 2.85 6.49 -52.49 -0.34 2.51 16 36 H 0.30 8.13 6.68 -40.82 -0.27 7.85 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -34.35 314.00 -6.43 -40.78 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -3.34 Total: 9.19 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.21 Total: -13.59 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.25 Total: -30.31 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.76 Total: -27.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.10 Total: 16.62 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.35 -6.43 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820562209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.217 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds