Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99673 * 2 1 4 4 C 1.50691 * 109.47343 * 269.99651 * 3 2 1 5 5 O 1.20835 * 119.99870 * 0.02562 * 4 3 2 6 6 O 1.34225 * 120.00479 * 179.97438 * 4 3 2 7 7 C 1.34773 * 120.00061 * 179.97438 * 2 1 3 8 8 O 1.21282 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.08995 * 109.47181 * 269.99950 * 1 2 3 25 25 H 1.09006 * 109.47212 * 30.00135 * 1 2 3 26 26 H 1.09002 * 109.46759 * 149.99698 * 1 2 3 27 27 H 1.09005 * 109.47035 * 30.00183 * 3 2 1 28 28 H 1.08998 * 109.46561 * 149.99684 * 3 2 1 29 29 H 0.96697 * 117.00481 * 179.97438 * 6 4 3 30 30 H 1.09001 * 109.46892 * 59.99768 * 9 7 2 31 31 H 1.08991 * 109.47294 * 299.99778 * 9 7 2 32 32 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 33 33 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 34 34 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 35 35 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 36 36 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7039 -1.4207 5 8 2.0558 1.0240 -2.3392 6 8 3.1080 2.8470 -1.6660 7 6 2.1389 -1.1672 0.0005 8 8 3.3517 -1.1670 0.0001 9 6 1.3855 -2.4722 0.0005 10 6 2.3648 -3.6177 0.0005 11 6 2.7397 -4.2061 -1.1860 12 6 3.6353 -5.2641 -1.1883 13 6 4.1685 -5.7373 0.0010 14 6 3.8127 -5.1603 1.1984 15 6 2.9043 -4.0855 1.2127 16 6 2.5319 -3.4842 2.4372 17 1 2.1937 -2.4587 2.4542 18 6 2.6018 -4.2177 3.6268 19 7 2.5176 -5.5230 3.5964 20 14 2.8153 -3.3334 5.2583 21 1 2.8596 -4.3292 6.3591 22 1 4.0821 -2.5589 5.2395 23 1 1.6731 -2.4090 5.4734 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6083 2.0285 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.2455 3.0842 -2.5933 30 1 0.7591 -2.5301 -0.8897 31 1 0.7585 -2.5298 0.8902 32 1 2.3311 -3.8451 -2.1182 33 1 3.9201 -5.7231 -2.1234 34 1 4.8657 -6.5620 -0.0126 35 1 4.2295 -5.5303 2.1234 36 1 2.3225 -5.9770 2.7618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820562209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = -132.594328 kcal Electronic energy + Delta-G solvation = -21527.323344 eV Core-core repulsion = 18168.122186 eV Total energy + Delta-G solvation = -3359.201158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.63522 -40.63180 -39.34707 -37.22377 -36.39338 -35.73257 -33.66117 -31.11994 -30.62440 -28.41252 -27.22455 -26.60753 -23.33899 -22.82774 -21.86853 -20.21727 -19.51589 -19.22856 -18.15087 -17.88759 -17.21224 -16.66533 -16.60888 -16.51344 -15.87800 -15.66745 -15.26875 -14.54443 -14.20560 -14.15154 -13.88764 -13.78652 -13.58083 -13.46445 -13.03040 -12.96165 -12.79328 -12.59710 -12.56549 -12.23002 -11.95860 -11.83500 -11.48614 -11.20810 -10.91151 -10.81903 -9.85604 -9.45715 -9.42945 -9.05090 -6.38707 0.88971 0.98465 1.13840 1.50105 1.51052 1.65051 1.79612 1.86396 2.34169 2.40011 2.72618 3.51634 3.84949 4.10054 4.17015 4.25486 4.29714 4.35028 4.41280 4.46911 4.54176 4.67426 4.75665 4.89407 4.97940 5.07139 5.32317 5.39702 5.50062 5.56636 5.78472 5.84668 5.97908 6.04381 6.25016 6.29936 6.45114 6.86590 6.92726 7.02543 7.21055 8.09908 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.006131 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.406903 B = 4566.196383 C = 5622.215609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.611 5.611 3 C 0.119 3.881 4 C 0.466 3.534 5 O -0.548 6.548 6 O -0.509 6.509 7 C 0.521 3.479 8 O -0.571 6.571 9 C -0.063 4.063 10 C -0.193 4.193 11 C -0.083 4.083 12 C -0.253 4.253 13 C -0.095 4.095 14 C -0.244 4.244 15 C 0.087 3.913 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.005 3.995 19 N -0.819 5.819 20 Si 1.108 2.892 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.249 1.249 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.169 0.831 28 H 0.113 0.887 29 H 0.426 0.574 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 14.793 -3.917 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.345 5.345 3 C -0.006 4.006 4 C 0.308 3.692 5 O -0.439 6.439 6 O -0.321 6.321 7 C 0.311 3.689 8 O -0.449 6.449 9 C -0.102 4.102 10 C -0.195 4.195 11 C -0.101 4.101 12 C -0.272 4.272 13 C -0.114 4.114 14 C -0.263 4.263 15 C 0.084 3.916 16 C -0.566 4.566 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.442 5.442 20 Si 0.926 3.074 21 H -0.197 1.197 22 H -0.200 1.200 23 H -0.172 1.172 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.186 0.814 28 H 0.131 0.869 29 H 0.288 0.712 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.744 14.202 -2.149 15.469 hybrid contribution 0.279 -0.076 -2.610 2.626 sum -5.465 14.126 -4.759 15.876 Atomic orbital electron populations 1.22117 0.76218 1.04699 1.03674 1.47720 1.08800 1.04011 1.73972 1.21076 1.02011 0.87776 0.89701 1.24484 0.73151 0.77840 0.93754 1.90714 1.50244 1.54897 1.48015 1.84479 1.69983 1.39668 1.38016 1.21231 0.87735 0.86247 0.73668 1.90653 1.16317 1.87786 1.50142 1.20253 0.97036 0.88679 1.04268 1.19528 1.04522 1.02150 0.93305 1.20782 0.97089 0.95847 0.96408 1.20678 1.06382 1.03061 0.97049 1.20890 0.98771 0.98716 0.92975 1.21155 1.04463 1.03997 0.96728 1.17775 0.89378 0.90974 0.93430 1.20553 1.42468 1.00611 0.92988 0.91020 1.28278 0.90059 0.95198 1.07604 1.70556 1.30718 1.10398 1.32559 0.83130 0.78870 0.75278 0.70158 1.19653 1.19969 1.17235 0.90029 0.88965 0.90504 0.81388 0.86903 0.71216 0.87686 0.88003 0.87130 0.86555 0.87176 0.89637 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 10.24 127.77 1.31 2.72 16 2 N -0.61 -17.36 2.36 -851.13 -2.01 -19.37 16 3 C 0.12 2.72 6.00 85.63 0.51 3.24 16 4 C 0.47 11.64 8.40 71.23 0.60 12.24 16 5 O -0.55 -18.07 17.19 21.94 0.38 -17.69 16 6 O -0.51 -9.07 13.42 -51.37 -0.69 -9.76 16 7 C 0.52 20.73 7.30 87.66 0.64 21.37 16 8 O -0.57 -28.31 15.61 -3.04 -0.05 -28.36 16 9 C -0.06 -2.50 3.73 29.10 0.11 -2.39 16 10 C -0.19 -9.52 4.43 -19.40 -0.09 -9.61 16 11 C -0.08 -3.89 9.66 22.22 0.21 -3.68 16 12 C -0.25 -11.75 10.05 22.46 0.23 -11.52 16 13 C -0.10 -4.70 10.02 22.22 0.22 -4.48 16 14 C -0.24 -13.44 7.95 22.73 0.18 -13.26 16 15 C 0.09 4.78 5.30 -21.29 -0.11 4.67 16 16 C -0.54 -28.85 8.08 23.46 0.19 -28.66 16 17 H 0.07 3.72 6.73 -2.91 -0.02 3.70 16 18 C 0.00 0.25 4.94 85.25 0.42 0.67 16 19 N -0.82 -44.68 12.31 21.82 0.27 -44.41 16 20 Si 1.11 43.63 30.00 68.60 2.06 45.69 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.28 8.07 -2.38 -0.02 1.26 16 26 H 0.08 1.49 6.44 -2.39 -0.02 1.48 16 27 H 0.17 2.07 8.07 -2.38 -0.02 2.05 16 28 H 0.11 2.97 7.42 -2.39 -0.02 2.96 16 29 H 0.43 4.20 9.10 -74.06 -0.67 3.52 16 30 H 0.11 3.50 7.31 -2.39 -0.02 3.48 16 31 H 0.10 3.91 7.02 -2.39 -0.02 3.89 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 35 H 0.09 4.91 6.49 -2.91 -0.02 4.89 16 36 H 0.28 16.14 6.68 -92.71 -0.62 15.52 16 Total: -1.00 -77.34 314.00 4.97 -72.37 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.59 Total: 30.23 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.42 Total: -28.69 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -1.74 Total: -63.78 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.36 Total: -55.81 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.06 Total: 45.69 kcal Total: -77.34 4.97 -72.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820562209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.225 kcal (2) G-P(sol) polarization free energy of solvation -77.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds