Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99969 * 2 1 4 4 H 1.08005 * 119.99834 * 203.07974 * 3 2 1 5 5 C 1.38813 * 120.00043 * 23.07093 * 3 2 1 6 6 N 1.31615 * 119.99907 * 10.84830 * 5 3 2 7 7 Si 1.86803 * 119.99987 * 190.83816 * 5 3 2 8 8 H 1.48500 * 109.46856 * 90.00597 * 7 5 3 9 9 H 1.48499 * 109.46856 * 210.00591 * 7 5 3 10 10 H 1.48498 * 109.46983 * 330.00481 * 7 5 3 11 11 C 1.46500 * 120.00267 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47170 * 274.42854 * 11 2 1 13 13 C 1.38010 * 120.04256 * 354.68662 * 12 11 2 14 14 C 1.38528 * 120.08988 * 179.97438 * 13 12 11 15 15 F 1.35098 * 119.90836 * 180.02562 * 14 13 12 16 16 C 1.38573 * 120.18114 * 0.02562 * 14 13 12 17 17 C 1.37959 * 120.09395 * 359.97438 * 16 14 13 18 18 C 1.39293 * 120.04872 * 174.66198 * 12 11 2 19 19 C 1.48452 * 120.09072 * 359.97438 * 18 12 11 20 20 N 1.34048 * 126.67169 * 4.86558 * 19 18 12 21 21 N 1.28991 * 107.26683 * 179.83486 * 20 19 18 22 22 N 1.28730 * 108.94181 * 0.42989 * 21 20 19 23 23 H 0.96996 * 125.33982 * 179.76739 * 22 21 20 24 24 N 1.28875 * 109.32146 * 359.72449 * 22 21 20 25 25 H 1.08997 * 109.47352 * 274.94607 * 1 2 3 26 26 H 1.09002 * 109.47460 * 34.94806 * 1 2 3 27 27 H 1.09007 * 109.47188 * 154.94476 * 1 2 3 28 28 H 0.96998 * 120.00281 * 179.97438 * 6 5 3 29 29 H 1.08993 * 109.47595 * 154.42570 * 11 2 1 30 30 H 1.09010 * 109.46909 * 34.42119 * 11 2 1 31 31 H 1.07997 * 119.95869 * 359.69836 * 13 12 11 32 32 H 1.07996 * 119.95095 * 179.97438 * 16 14 13 33 33 H 1.08003 * 120.04127 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1649 1.2233 -0.3667 5 6 1.5389 2.3400 0.4711 6 7 0.3914 2.2630 1.1111 7 14 2.3457 4.0024 0.1969 8 1 1.8737 4.5754 -1.0893 9 1 1.9839 4.9176 1.3090 10 1 3.8206 3.8355 0.1530 11 6 2.1975 -1.2687 -0.0006 12 6 2.3537 -1.7592 1.4158 13 6 1.9335 -0.9732 2.4695 14 6 2.0761 -1.4234 3.7718 15 9 1.6631 -0.6512 4.8005 16 6 2.6413 -2.6636 4.0223 17 6 3.0639 -3.4555 2.9746 18 6 2.9219 -3.0067 1.6632 19 6 3.3742 -3.8560 0.5328 20 7 3.3849 -3.5218 -0.7653 21 7 3.8519 -4.5323 -1.4170 22 7 4.1216 -5.4773 -0.5855 23 1 4.4821 -6.3463 -0.8215 24 7 3.8383 -5.0874 0.6097 25 1 -0.3634 0.0886 1.0238 26 1 -0.3634 0.8423 -0.5887 27 1 -0.3634 -0.9310 -0.4352 28 1 -0.0353 3.0693 1.4407 29 1 3.1819 -1.1197 -0.4441 30 1 1.6450 -2.0070 -0.5819 31 1 1.4970 -0.0040 2.2788 32 1 2.7511 -3.0107 5.0390 33 1 3.5039 -4.4221 3.1708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821592757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = 137.444236 kcal Electronic energy + Delta-G solvation = -21218.351176 eV Core-core repulsion = 17811.984967 eV Total energy + Delta-G solvation = -3406.366210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.39951 -44.30469 -38.89641 -35.53235 -34.26845 -33.30313 -31.92238 -30.06454 -29.83719 -26.29878 -25.67175 -24.59387 -23.83470 -22.16845 -21.19352 -20.29934 -19.04792 -17.02322 -16.88885 -16.65873 -16.18697 -15.68248 -15.10023 -14.71155 -14.07222 -13.58644 -13.52545 -13.32313 -13.11424 -12.73369 -12.42485 -12.20554 -11.90943 -11.39887 -11.24600 -11.15005 -10.95604 -10.79344 -10.62931 -10.55973 -10.49942 -10.28867 -9.97159 -9.82001 -8.54012 -8.33620 -8.07406 -6.79932 -5.71616 -3.19581 0.89470 1.36405 1.72392 2.32893 2.55629 3.41711 3.48477 3.49395 3.88730 4.07615 4.38541 4.52078 4.68866 5.15842 5.19361 5.47142 5.47592 5.58031 5.65124 5.79163 5.90889 6.30254 6.37203 6.45194 6.50647 6.58908 6.66178 6.80820 6.86429 7.17861 7.41949 7.48384 7.76496 7.85523 8.29861 8.41250 9.25543 9.86588 10.35801 11.32612 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.006515 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.707294 B = 4296.919793 C = 5451.760042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.600 5.600 3 C -0.255 4.255 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.184 3.816 12 C -0.020 4.020 13 C -0.125 4.125 14 C 0.112 3.888 15 F -0.140 7.140 16 C -0.178 4.178 17 C -0.061 4.061 18 C -0.055 4.055 19 C 0.236 3.764 20 N -0.257 5.257 21 N -0.057 5.057 22 N -0.235 5.235 23 H 0.471 0.529 24 N -0.306 5.306 25 H 0.032 0.968 26 H 0.045 0.955 27 H -0.003 1.003 28 H 0.254 0.746 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.180 0.820 32 H 0.132 0.868 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 -15.107 1.434 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.321 5.321 3 C -0.384 4.384 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.057 3.943 12 C -0.026 4.026 13 C -0.143 4.143 14 C 0.092 3.908 15 F -0.118 7.118 16 C -0.197 4.197 17 C -0.082 4.082 18 C -0.060 4.060 19 C -0.043 4.043 20 N -0.130 5.130 21 N -0.052 5.052 22 N -0.080 5.080 23 H 0.325 0.675 24 N -0.158 5.158 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.197 0.803 32 H 0.150 0.850 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.402 -15.050 0.861 16.014 hybrid contribution 0.493 0.540 0.586 0.937 sum 5.895 -14.510 1.448 15.728 Atomic orbital electron populations 1.20873 0.82358 0.95691 0.99580 1.44033 1.02017 1.00603 1.85479 1.19258 0.98403 0.85429 1.35328 0.91221 1.25011 0.97634 0.98473 0.98322 1.70020 1.17947 1.27380 1.40004 0.86257 0.78900 0.84144 0.77279 1.21517 1.21761 1.20510 1.20122 0.97667 0.88121 0.88421 1.21488 0.90620 0.90052 1.00448 1.21731 1.00229 1.03570 0.88805 1.18083 0.98139 0.89649 0.84920 1.91485 1.87961 1.74684 1.57715 1.20862 1.04588 0.94299 0.99989 1.20743 0.97900 0.99190 0.90330 1.17187 1.06311 0.93981 0.88476 1.23680 0.99000 0.89066 0.92561 1.76357 1.15955 1.17577 1.03118 1.78944 1.12366 0.93426 1.20452 1.47684 1.42026 1.16543 1.01737 0.67536 1.74888 1.20548 1.14655 1.05660 0.95007 0.93616 0.98408 0.93599 0.90455 0.91610 0.80303 0.85037 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 8.65 59.85 0.52 4.39 16 2 N -0.60 -14.71 1.74 -182.50 -0.32 -15.03 16 3 C -0.25 -6.80 9.05 -15.06 -0.14 -6.94 16 4 H 0.07 1.85 7.82 -52.48 -0.41 1.44 16 5 C 0.00 0.10 5.14 -17.43 -0.09 0.01 16 6 N -0.91 -25.47 10.60 55.49 0.59 -24.88 16 7 Si 0.90 21.70 29.57 -169.99 -5.03 16.67 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.18 3.89 4.37 -5.19 -0.02 3.86 16 12 C -0.02 -0.40 5.90 -104.31 -0.62 -1.02 16 13 C -0.12 -2.61 9.13 -39.56 -0.36 -2.97 16 14 C 0.11 2.07 7.30 -39.35 -0.29 1.78 16 15 F -0.14 -2.67 17.26 2.25 0.04 -2.63 16 16 C -0.18 -2.68 10.01 -39.56 -0.40 -3.07 16 17 C -0.06 -0.89 9.70 -39.28 -0.38 -1.27 16 18 C -0.06 -0.93 5.88 -104.89 -0.62 -1.55 16 19 C 0.24 3.72 7.80 -156.30 -1.22 2.50 16 20 N -0.26 -4.23 9.43 32.15 0.30 -3.93 16 21 N -0.06 -0.76 13.47 60.35 0.81 0.05 16 22 N -0.24 -2.39 7.90 60.35 0.48 -1.91 16 23 H 0.47 2.25 8.96 -340.37 -3.05 -0.80 16 24 N -0.31 -3.94 12.09 32.17 0.39 -3.55 16 25 H 0.03 0.82 6.92 -51.93 -0.36 0.46 16 26 H 0.05 1.19 7.27 -51.93 -0.38 0.81 16 27 H 0.00 -0.06 7.88 -51.93 -0.41 -0.47 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 1.66 7.46 -51.93 -0.39 1.27 16 30 H 0.07 1.34 6.98 -51.92 -0.36 0.98 16 31 H 0.18 4.48 5.90 -52.49 -0.31 4.17 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 1.58 7.89 -52.48 -0.41 1.16 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -30.10 289.77 -7.61 -37.71 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.64 Total: -2.59 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.61 Total: -4.28 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 2.25 Total: -49.24 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.10 -7.61 -37.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821592757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.157 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds