Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99969 * 2 1 4 4 H 1.08005 * 119.99834 * 203.07974 * 3 2 1 5 5 C 1.38813 * 120.00043 * 23.07093 * 3 2 1 6 6 N 1.31615 * 119.99907 * 10.84830 * 5 3 2 7 7 Si 1.86803 * 119.99987 * 190.83816 * 5 3 2 8 8 H 1.48500 * 109.46856 * 90.00597 * 7 5 3 9 9 H 1.48499 * 109.46856 * 210.00591 * 7 5 3 10 10 H 1.48498 * 109.46983 * 330.00481 * 7 5 3 11 11 C 1.46500 * 120.00267 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47170 * 274.42854 * 11 2 1 13 13 C 1.38010 * 120.04256 * 354.68662 * 12 11 2 14 14 C 1.38528 * 120.08988 * 179.97438 * 13 12 11 15 15 F 1.35098 * 119.90836 * 180.02562 * 14 13 12 16 16 C 1.38573 * 120.18114 * 0.02562 * 14 13 12 17 17 C 1.37959 * 120.09395 * 359.97438 * 16 14 13 18 18 C 1.39293 * 120.04872 * 174.66198 * 12 11 2 19 19 C 1.48452 * 120.09072 * 359.97438 * 18 12 11 20 20 N 1.34048 * 126.67169 * 4.86558 * 19 18 12 21 21 N 1.28991 * 107.26683 * 179.83486 * 20 19 18 22 22 N 1.28730 * 108.94181 * 0.42989 * 21 20 19 23 23 H 0.96996 * 125.33982 * 179.76739 * 22 21 20 24 24 N 1.28875 * 109.32146 * 359.72449 * 22 21 20 25 25 H 1.08997 * 109.47352 * 274.94607 * 1 2 3 26 26 H 1.09002 * 109.47460 * 34.94806 * 1 2 3 27 27 H 1.09007 * 109.47188 * 154.94476 * 1 2 3 28 28 H 0.96998 * 120.00281 * 179.97438 * 6 5 3 29 29 H 1.08993 * 109.47595 * 154.42570 * 11 2 1 30 30 H 1.09010 * 109.46909 * 34.42119 * 11 2 1 31 31 H 1.07997 * 119.95869 * 359.69836 * 13 12 11 32 32 H 1.07996 * 119.95095 * 179.97438 * 16 14 13 33 33 H 1.08003 * 120.04127 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1649 1.2233 -0.3667 5 6 1.5389 2.3400 0.4711 6 7 0.3914 2.2630 1.1111 7 14 2.3457 4.0024 0.1969 8 1 1.8737 4.5754 -1.0893 9 1 1.9839 4.9176 1.3090 10 1 3.8206 3.8355 0.1530 11 6 2.1975 -1.2687 -0.0006 12 6 2.3537 -1.7592 1.4158 13 6 1.9335 -0.9732 2.4695 14 6 2.0761 -1.4234 3.7718 15 9 1.6631 -0.6512 4.8005 16 6 2.6413 -2.6636 4.0223 17 6 3.0639 -3.4555 2.9746 18 6 2.9219 -3.0067 1.6632 19 6 3.3742 -3.8560 0.5328 20 7 3.3849 -3.5218 -0.7653 21 7 3.8519 -4.5323 -1.4170 22 7 4.1216 -5.4773 -0.5855 23 1 4.4821 -6.3463 -0.8215 24 7 3.8383 -5.0874 0.6097 25 1 -0.3634 0.0886 1.0238 26 1 -0.3634 0.8423 -0.5887 27 1 -0.3634 -0.9310 -0.4352 28 1 -0.0353 3.0693 1.4407 29 1 3.1819 -1.1197 -0.4441 30 1 1.6450 -2.0070 -0.5819 31 1 1.4970 -0.0040 2.2788 32 1 2.7511 -3.0107 5.0390 33 1 3.5039 -4.4221 3.1708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821592757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = 119.092812 kcal Electronic energy + Delta-G solvation = -21219.146954 eV Core-core repulsion = 17811.984967 eV Total energy + Delta-G solvation = -3407.161987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.85218 -45.37706 -40.29970 -37.35760 -35.38604 -34.44129 -33.71910 -31.76088 -31.13229 -28.07921 -27.57169 -25.74139 -25.07490 -23.78988 -22.53821 -21.90463 -20.09482 -18.73343 -18.26524 -18.06420 -17.48883 -17.15032 -16.62066 -16.54866 -15.50451 -15.36243 -14.96353 -14.83110 -14.70781 -14.06890 -13.99199 -13.69555 -13.23491 -13.01144 -12.89113 -12.76272 -12.52587 -12.33131 -12.23510 -12.05433 -12.02251 -11.91310 -11.73787 -11.67368 -10.60964 -9.75932 -9.39815 -8.80557 -7.78742 -5.28359 -0.34406 0.25131 0.38504 1.30856 1.48697 1.49442 1.51206 1.57715 2.53172 2.71496 2.73017 3.24678 3.31671 3.35292 3.65504 3.91847 4.13737 4.26316 4.33795 4.50747 4.55904 4.81073 4.87022 4.92641 5.04906 5.11391 5.25050 5.33516 5.43142 5.62433 5.70408 5.75025 5.76337 5.98615 6.36744 7.18971 7.21633 7.88273 8.33170 9.23742 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.006515 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.707294 B = 4296.919793 C = 5451.760042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.611 5.611 3 C -0.259 4.259 4 H 0.067 0.933 5 C -0.044 4.044 6 N -0.932 5.932 7 Si 0.962 3.038 8 H -0.286 1.286 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.195 3.805 12 C -0.039 4.039 13 C -0.150 4.150 14 C 0.096 3.904 15 F -0.150 7.150 16 C -0.154 4.154 17 C -0.044 4.044 18 C -0.047 4.047 19 C 0.217 3.783 20 N -0.293 5.293 21 N -0.060 5.060 22 N -0.198 5.198 23 H 0.494 0.506 24 N -0.286 5.286 25 H 0.010 0.990 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.248 0.752 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.172 0.828 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.152 -17.972 1.950 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.333 5.333 3 C -0.389 4.389 4 H 0.085 0.915 5 C -0.240 4.240 6 N -0.579 5.579 7 Si 0.790 3.210 8 H -0.213 1.213 9 H -0.222 1.222 10 H -0.197 1.197 11 C 0.068 3.932 12 C -0.044 4.044 13 C -0.169 4.169 14 C 0.076 3.924 15 F -0.128 7.128 16 C -0.172 4.172 17 C -0.064 4.064 18 C -0.051 4.051 19 C -0.062 4.062 20 N -0.165 5.165 21 N -0.055 5.055 22 N -0.049 5.049 23 H 0.354 0.646 24 N -0.139 5.139 25 H 0.028 0.972 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.189 0.811 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.160 -17.958 1.351 19.380 hybrid contribution 0.041 1.201 0.397 1.265 sum 7.201 -16.757 1.748 18.323 Atomic orbital electron populations 1.20585 0.82625 0.95712 0.97921 1.44145 1.02100 1.01404 1.85669 1.19454 0.98347 0.86531 1.34544 0.91490 1.25662 0.98360 1.01318 0.98635 1.70184 1.19115 1.27468 1.41102 0.85349 0.78402 0.80456 0.76745 1.21338 1.22244 1.19685 1.19996 0.96768 0.86630 0.89779 1.21079 0.92948 0.91681 0.98722 1.21345 1.02339 1.02434 0.90827 1.18245 0.99393 0.91081 0.83726 1.91455 1.88302 1.75302 1.57788 1.21233 1.01779 0.92074 1.02157 1.21145 0.96235 1.00204 0.88823 1.17244 1.05006 0.92761 0.90136 1.23504 1.00570 0.89975 0.92173 1.76335 1.17298 1.19067 1.03774 1.78898 1.12635 0.93552 1.20440 1.47766 1.39570 1.16892 1.00654 0.64635 1.74831 1.19498 1.13204 1.06378 0.97215 0.96142 0.95927 0.94285 0.91292 0.91149 0.84972 0.81061 0.81079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 8.65 127.77 1.10 10.04 16 2 N -0.61 -31.12 1.74 -731.30 -1.27 -32.39 16 3 C -0.26 -14.29 9.05 84.03 0.76 -13.53 16 4 H 0.07 3.66 7.82 -2.91 -0.02 3.64 16 5 C -0.04 -2.48 5.14 84.86 0.44 -2.05 16 6 N -0.93 -54.71 10.60 21.65 0.23 -54.48 16 7 Si 0.96 45.78 29.57 68.60 2.03 47.81 16 8 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 C 0.19 8.38 4.37 85.63 0.37 8.75 16 12 C -0.04 -1.54 5.90 -19.66 -0.12 -1.66 16 13 C -0.15 -6.50 9.13 22.28 0.20 -6.30 16 14 C 0.10 3.48 7.30 22.42 0.16 3.64 16 15 F -0.15 -5.77 17.26 44.97 0.78 -4.99 16 16 C -0.15 -4.10 10.01 22.28 0.22 -3.88 16 17 C -0.04 -1.11 9.70 22.47 0.22 -0.89 16 18 C -0.05 -1.50 5.88 -20.04 -0.12 -1.61 16 19 C 0.22 6.29 7.80 137.38 1.07 7.36 16 20 N -0.29 -9.19 9.43 -52.19 -0.49 -9.68 16 21 N -0.06 -1.48 13.47 37.02 0.50 -0.98 16 22 N -0.20 -3.29 7.90 37.02 0.29 -3.00 16 23 H 0.49 2.62 8.96 -347.54 -3.12 -0.49 16 24 N -0.29 -6.24 12.09 -52.13 -0.63 -6.87 16 25 H 0.01 0.53 6.92 -2.39 -0.02 0.51 16 26 H 0.02 1.09 7.27 -2.39 -0.02 1.08 16 27 H 0.02 1.00 7.88 -2.38 -0.02 0.98 16 28 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.07 3.03 7.46 -2.39 -0.02 3.01 16 30 H 0.07 2.91 6.98 -2.38 -0.02 2.89 16 31 H 0.13 7.05 5.90 -2.91 -0.02 7.04 16 32 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.17 3.03 7.89 -2.91 -0.02 3.01 16 Total: -1.00 -68.16 289.77 3.82 -64.34 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -1.94 Total: 0.36 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.32 Total: -0.11 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -1.37 Total: -107.40 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.78 Total: -4.99 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -68.16 3.82 -64.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821592757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.433 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds