Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99977 * 2 1 4 4 C 1.50695 * 109.46991 * 66.05056 * 3 2 1 5 5 H 1.08001 * 120.00264 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00299 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00723 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 119.99719 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.46988 * 90.00352 * 8 6 4 10 10 H 1.48501 * 109.46803 * 210.00228 * 8 6 4 11 11 H 1.48498 * 109.46888 * 329.99949 * 8 6 4 12 12 C 1.39464 * 110.99892 * 236.04781 * 2 1 3 13 13 C 1.38793 * 120.12433 * 63.95367 * 12 2 1 14 14 C 1.38145 * 120.08999 * 179.70187 * 13 12 2 15 15 C 1.38355 * 120.34261 * 0.25937 * 14 13 12 16 16 C 1.38265 * 120.25265 * 359.97438 * 15 14 13 17 17 F 1.35102 * 120.04993 * 180.02562 * 16 15 14 18 18 C 1.39457 * 119.90089 * 0.02562 * 16 15 14 19 19 C 1.48350 * 120.16849 * 180.02562 * 18 16 15 20 20 N 1.34077 * 126.67971 * 180.02562 * 19 18 16 21 21 N 1.28980 * 107.26670 * 179.97438 * 20 19 18 22 22 N 1.28728 * 108.95225 * 359.97438 * 21 20 19 23 23 H 0.97002 * 125.33626 * 179.97438 * 22 21 20 24 24 N 1.28873 * 109.33062 * 359.75124 * 22 21 20 25 25 H 1.08995 * 109.47198 * 183.95036 * 1 2 3 26 26 H 1.08993 * 109.47164 * 303.95062 * 1 2 3 27 27 H 1.08998 * 109.47133 * 63.95414 * 1 2 3 28 28 H 1.09000 * 109.47058 * 186.04139 * 3 2 1 29 29 H 1.08991 * 109.47397 * 306.04472 * 3 2 1 30 30 H 0.96995 * 120.00702 * 179.97438 * 7 6 4 31 31 H 1.08002 * 119.95760 * 359.97438 * 13 12 2 32 32 H 1.07993 * 119.82465 * 180.27510 * 14 13 12 33 33 H 1.08001 * 119.87177 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0268 3.3494 1.5286 7 7 1.7136 3.9392 2.6615 8 14 2.9999 4.2761 0.2310 9 1 2.0633 4.9798 -0.6815 10 1 3.8863 5.2678 0.8914 11 1 3.8239 3.3175 -0.5483 12 6 1.9688 -0.7272 -1.0800 13 6 1.7263 -0.3012 -2.3785 14 6 2.2269 -1.0187 -3.4477 15 6 2.9675 -2.1675 -3.2331 16 6 3.2135 -2.6073 -1.9456 17 9 3.9376 -3.7294 -1.7408 18 6 2.7131 -1.8910 -0.8587 19 6 2.9740 -2.3573 0.5252 20 7 2.5582 -1.7740 1.6586 21 7 2.9936 -2.4896 2.6395 22 7 3.6574 -3.4864 2.1674 23 1 4.0893 -4.1744 2.6976 24 7 3.6542 -3.4297 0.8799 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0797 1.3444 -0.1082 29 1 1.5612 1.9273 -0.8308 30 1 1.9882 4.8553 2.8236 31 1 1.1492 0.5948 -2.5533 32 1 2.0394 -0.6809 -4.4561 33 1 3.3555 -2.7223 -4.0745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821597933.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = 108.684269 kcal Electronic energy + Delta-G solvation = -21423.076845 eV Core-core repulsion = 18015.463509 eV Total energy + Delta-G solvation = -3407.613335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87904 -45.27441 -40.77829 -37.47765 -35.27319 -34.59678 -34.47899 -31.44663 -30.97618 -29.58087 -26.79924 -25.66638 -25.22532 -23.92224 -22.61405 -21.75884 -20.07544 -19.06040 -18.32688 -18.01666 -17.44643 -17.25411 -16.67596 -16.40717 -16.14560 -15.50554 -15.30811 -14.94028 -14.79749 -14.38767 -14.00708 -13.47429 -13.25233 -13.11001 -12.94572 -12.86184 -12.76142 -12.40548 -12.19634 -12.11389 -11.89028 -11.87796 -11.79211 -11.44914 -10.74066 -9.65983 -9.63801 -9.08059 -8.21985 -6.24192 -0.35252 0.12748 0.31977 1.34896 1.38487 1.42642 1.48243 1.54547 2.37672 2.59500 2.77462 2.84527 3.10724 3.27834 3.45406 3.99159 4.15983 4.21414 4.30410 4.37457 4.57368 4.62506 4.68729 4.84507 4.94758 4.95507 5.08856 5.19961 5.29168 5.39878 5.60166 5.73128 5.77461 6.03798 6.37031 6.80083 6.83308 7.33905 7.37402 8.94775 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.007101 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.275572 B = 3942.405984 C = 4945.914296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.505 5.505 3 C 0.189 3.811 4 C -0.503 4.503 5 H 0.040 0.960 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.941 3.059 9 H -0.258 1.258 10 H -0.286 1.286 11 H -0.253 1.253 12 C 0.148 3.852 13 C -0.171 4.171 14 C -0.043 4.043 15 C -0.152 4.152 16 C 0.128 3.872 17 F -0.128 7.128 18 C -0.069 4.069 19 C 0.204 3.796 20 N -0.240 5.240 21 N -0.081 5.081 22 N -0.209 5.209 23 H 0.490 0.510 24 N -0.294 5.294 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.004 0.996 30 H 0.265 0.735 31 H 0.141 0.859 32 H 0.181 0.819 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 -15.082 -14.091 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.226 5.226 3 C 0.064 3.936 4 C -0.542 4.542 5 H 0.059 0.941 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.764 3.236 9 H -0.183 1.183 10 H -0.212 1.212 11 H -0.177 1.177 12 C 0.050 3.950 13 C -0.192 4.192 14 C -0.062 4.062 15 C -0.171 4.171 16 C 0.106 3.894 17 F -0.106 7.106 18 C -0.074 4.074 19 C -0.076 4.076 20 N -0.112 5.112 21 N -0.076 5.076 22 N -0.058 5.058 23 H 0.348 0.652 24 N -0.148 5.148 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.198 0.802 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.406 -15.157 -12.822 20.143 hybrid contribution 0.528 0.463 -0.159 0.720 sum 3.934 -14.693 -12.981 19.997 Atomic orbital electron populations 1.22146 0.85142 1.00929 1.00986 1.59204 1.08898 1.15131 1.39373 1.19879 0.94344 0.83991 0.95392 1.21168 1.34349 0.96987 1.01660 0.94146 1.25787 0.97037 0.98450 0.97653 1.70054 1.48829 1.13753 1.26366 0.85813 0.79455 0.78748 0.79561 1.18301 1.21173 1.17681 1.18942 0.93731 0.91532 0.90746 1.22032 1.02887 1.02247 0.92008 1.21456 0.92448 0.91903 1.00435 1.21436 1.02070 0.99191 0.94379 1.17673 0.94101 0.84176 0.93460 1.91526 1.74718 1.48472 1.95915 1.17519 1.05697 0.98173 0.86023 1.23548 0.97842 0.90330 0.95841 1.76713 1.18473 1.20444 0.95554 1.79019 1.08032 0.96911 1.23663 1.47798 1.34367 1.20643 1.02998 0.65178 1.74953 1.22381 1.21344 0.96135 0.91965 0.92418 0.94186 0.96775 0.97834 0.92616 0.84097 0.80192 0.80468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.08 9.20 127.69 1.17 3.26 16 2 N -0.51 -21.50 2.92 -723.79 -2.12 -23.62 16 3 C 0.19 9.11 3.37 85.56 0.29 9.40 16 4 C -0.50 -29.49 9.01 25.60 0.23 -29.26 16 5 H 0.04 2.68 7.37 -2.91 -0.02 2.66 16 6 C 0.01 0.44 5.47 84.65 0.46 0.91 16 7 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 8 Si 0.94 44.14 27.47 68.60 1.88 46.02 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.25 -11.19 6.54 99.48 0.65 -10.53 16 12 C 0.15 5.17 4.68 38.47 0.18 5.35 16 13 C -0.17 -4.54 8.65 22.38 0.19 -4.34 16 14 C -0.04 -0.78 10.03 22.28 0.22 -0.56 16 15 C -0.15 -2.88 10.01 22.30 0.22 -2.66 16 16 C 0.13 3.49 7.27 22.57 0.16 3.65 16 17 F -0.13 -3.55 15.83 44.97 0.71 -2.84 16 18 C -0.07 -2.36 5.90 -19.89 -0.12 -2.48 16 19 C 0.20 7.70 7.89 137.33 1.08 8.78 16 20 N -0.24 -10.29 10.93 -52.23 -0.57 -10.86 16 21 N -0.08 -2.94 13.47 37.02 0.50 -2.44 16 22 N -0.21 -5.63 7.90 37.02 0.29 -5.34 16 23 H 0.49 7.44 8.96 -347.53 -3.12 4.33 16 24 N -0.29 -9.39 11.10 -52.18 -0.58 -9.97 16 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.55 6.76 -2.39 -0.02 2.54 16 27 H 0.04 1.32 7.34 -2.39 -0.02 1.30 16 28 H 0.01 0.72 7.12 -2.39 -0.02 0.70 16 29 H 0.00 0.18 6.90 -2.39 -0.02 0.17 16 30 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.14 3.52 7.13 -2.91 -0.02 3.50 16 32 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -77.36 289.92 2.53 -74.83 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.00 Total: 2.14 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.11 Total: -7.95 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -2.18 Total: -112.21 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.71 Total: -2.84 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -77.36 2.53 -74.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597933.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.518 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds