Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 C 1.39594 * 111.00175 * 236.04888 * 2 1 3 13 13 C 1.38757 * 120.11585 * 63.67237 * 12 2 1 14 14 C 1.38138 * 120.06412 * 179.74662 * 13 12 2 15 15 C 1.38583 * 120.29510 * 0.55362 * 14 13 12 16 16 F 1.35101 * 119.88965 * 179.71875 * 15 14 13 17 17 C 1.38200 * 120.22520 * 359.70184 * 15 14 13 18 18 C 1.39264 * 119.92989 * 0.02562 * 17 15 14 19 19 C 1.48366 * 120.14791 * 179.97438 * 18 17 15 20 20 N 1.34079 * 126.68221 * 179.70381 * 19 18 17 21 21 N 1.28984 * 107.26369 * 179.89568 * 20 19 18 22 22 N 1.28726 * 108.95286 * 0.37911 * 21 20 19 23 23 H 0.97000 * 125.33262 * 179.79145 * 22 21 20 24 24 N 1.28871 * 109.32935 * 359.75743 * 22 21 20 25 25 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 26 26 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 28 28 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 29 29 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 30 30 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 31 31 H 1.08004 * 119.96818 * 0.02562 * 13 12 2 32 32 H 1.08007 * 119.85085 * 180.25843 * 14 13 12 33 33 H 1.08001 * 120.03462 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 2.6601 3.9508 4.1326 10 1 1.4298 5.6464 2.9112 11 1 0.3054 3.6291 3.6505 12 6 1.9693 -0.7278 -1.0810 13 6 1.7219 -0.3050 -2.3792 14 6 2.2219 -1.0231 -3.4481 15 6 2.9625 -2.1743 -3.2317 16 9 3.4428 -2.8735 -4.2832 17 6 3.2118 -2.6093 -1.9439 18 6 2.7170 -1.8894 -0.8592 19 6 2.9812 -2.3524 0.5254 20 7 2.5755 -1.7617 1.6586 21 7 3.0090 -2.4777 2.6399 22 7 3.6691 -3.4772 2.1686 23 1 4.1011 -4.1647 2.6993 24 7 3.6657 -3.4217 0.8810 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.0796 1.3446 -0.1082 29 1 1.5610 1.9274 -0.8310 30 1 2.9863 4.9181 0.7769 31 1 1.1416 0.5890 -2.5541 32 1 2.0307 -0.6886 -4.4571 33 1 3.7890 -3.5071 -1.7788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821597956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = 123.991555 kcal Electronic energy + Delta-G solvation = -21111.211019 eV Core-core repulsion = 17704.261457 eV Total energy + Delta-G solvation = -3406.949562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.74704 -44.00650 -39.43828 -35.88189 -33.95437 -33.24498 -32.50571 -30.47794 -29.19278 -27.15447 -25.06147 -24.54517 -23.89196 -22.55540 -21.41378 -20.31834 -18.92416 -17.35622 -16.72101 -16.53998 -16.13762 -15.66859 -15.44880 -14.74692 -14.59774 -13.87152 -13.65083 -13.57500 -13.42268 -12.81511 -12.44701 -12.09916 -11.93757 -11.78900 -11.27547 -11.16557 -10.93821 -10.86453 -10.66066 -10.59414 -10.55105 -10.50011 -9.94334 -9.25206 -8.74345 -8.40809 -8.14810 -7.38802 -5.99406 -3.99210 0.85086 1.32913 1.59475 2.55715 2.71468 3.36537 3.42249 3.46315 3.81906 3.95500 4.37435 4.44423 4.64779 4.75980 5.01067 5.15632 5.36804 5.50760 5.57299 5.79263 5.87616 6.00007 6.14835 6.19121 6.22177 6.32247 6.59650 6.70015 6.75875 6.88819 7.24319 7.30440 7.87046 8.04730 8.15487 8.57908 8.64392 9.08345 9.64175 11.11685 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.006421 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.681377 B = 4359.677802 C = 5635.389306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.497 5.497 3 C 0.203 3.797 4 C -0.498 4.498 5 H 0.069 0.931 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.273 1.273 12 C 0.150 3.850 13 C -0.126 4.126 14 C -0.124 4.124 15 C 0.075 3.925 16 F -0.143 7.143 17 C -0.114 4.114 18 C 0.016 3.984 19 C 0.224 3.776 20 N -0.189 5.189 21 N -0.068 5.068 22 N -0.243 5.243 23 H 0.468 0.532 24 N -0.309 5.309 25 H 0.017 0.983 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.029 0.971 29 H -0.003 1.003 30 H 0.260 0.740 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -14.393 -4.049 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.218 5.218 3 C 0.080 3.920 4 C -0.536 4.536 5 H 0.087 0.913 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.198 1.198 12 C 0.052 3.948 13 C -0.146 4.146 14 C -0.144 4.144 15 C 0.056 3.944 16 F -0.122 7.122 17 C -0.135 4.135 18 C 0.011 3.989 19 C -0.055 4.055 20 N -0.062 5.062 21 N -0.063 5.063 22 N -0.086 5.086 23 H 0.321 0.679 24 N -0.162 5.162 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.047 0.953 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.221 -14.400 -2.972 14.705 hybrid contribution 0.157 0.414 -0.229 0.498 sum 0.378 -13.986 -3.202 14.353 Atomic orbital electron populations 1.22208 0.86579 0.99598 1.01468 1.59851 1.07577 1.18203 1.36177 1.19805 0.95372 0.79621 0.97193 1.21120 1.34575 0.96487 1.01451 0.91324 1.24966 0.95407 0.97369 0.96923 1.69961 1.38623 1.11480 1.34058 0.86487 0.78927 0.78224 0.83710 1.20732 1.21504 1.19765 1.19194 0.93325 0.91916 0.90367 1.21721 1.00441 1.00333 0.92119 1.21145 0.98455 0.94268 1.00565 1.17322 1.00492 0.93208 0.83376 1.91476 1.86661 1.78230 1.55790 1.20913 1.01439 1.01160 0.89992 1.16960 1.00710 0.95292 0.85910 1.23275 0.97054 0.89641 0.95549 1.76739 1.16462 1.18482 0.94500 1.79113 1.07370 0.95849 1.24009 1.47707 1.36314 1.21322 1.03265 0.67896 1.74819 1.22940 1.22689 0.95736 0.96411 0.93657 0.89841 0.95308 0.98553 0.93013 0.84242 0.84711 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 9.08 60.07 0.55 1.45 16 2 N -0.50 -10.49 2.92 -180.07 -0.53 -11.01 16 3 C 0.20 5.13 4.31 -4.97 -0.02 5.11 16 4 C -0.50 -13.72 8.51 -34.44 -0.29 -14.02 16 5 H 0.07 1.90 7.10 -52.48 -0.37 1.52 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.15 2.76 4.67 -83.50 -0.39 2.37 16 13 C -0.13 -2.02 8.69 -39.43 -0.34 -2.36 16 14 C -0.12 -1.71 10.01 -39.49 -0.40 -2.11 16 15 C 0.08 1.06 7.29 -39.47 -0.29 0.78 16 16 F -0.14 -1.96 17.26 2.25 0.04 -1.92 16 17 C -0.11 -1.67 9.67 -39.21 -0.38 -2.04 16 18 C 0.02 0.27 5.89 -104.72 -0.62 -0.34 16 19 C 0.22 3.98 7.90 -156.29 -1.23 2.75 16 20 N -0.19 -3.73 10.93 32.14 0.35 -3.38 16 21 N -0.07 -1.12 13.47 60.35 0.81 -0.31 16 22 N -0.24 -3.03 7.90 60.35 0.48 -2.55 16 23 H 0.47 3.27 8.96 -340.37 -3.05 0.22 16 24 N -0.31 -4.57 12.08 32.16 0.39 -4.18 16 25 H 0.02 0.31 7.46 -51.93 -0.39 -0.08 16 26 H 0.04 0.76 8.13 -51.92 -0.42 0.34 16 27 H 0.08 1.67 6.86 -51.93 -0.36 1.32 16 28 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 29 H 0.00 -0.08 7.49 -51.93 -0.39 -0.47 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.14 2.20 7.15 -52.48 -0.38 1.83 16 32 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.14 1.84 7.88 -52.49 -0.41 1.42 16 LS Contribution 295.64 15.07 4.46 4.46 Total: -1.00 -31.89 295.64 -7.54 -39.43 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -5.74 Total: -4.46 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -3.51 Total: -6.99 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 2.24 Total: -47.23 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.89 -7.54 -39.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.422 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds