Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 C 1.39594 * 111.00175 * 236.04888 * 2 1 3 13 13 C 1.38757 * 120.11585 * 63.67237 * 12 2 1 14 14 C 1.38138 * 120.06412 * 179.74662 * 13 12 2 15 15 C 1.38583 * 120.29510 * 0.55362 * 14 13 12 16 16 F 1.35101 * 119.88965 * 179.71875 * 15 14 13 17 17 C 1.38200 * 120.22520 * 359.70184 * 15 14 13 18 18 C 1.39264 * 119.92989 * 0.02562 * 17 15 14 19 19 C 1.48366 * 120.14791 * 179.97438 * 18 17 15 20 20 N 1.34079 * 126.68221 * 179.70381 * 19 18 17 21 21 N 1.28984 * 107.26369 * 179.89568 * 20 19 18 22 22 N 1.28726 * 108.95286 * 0.37911 * 21 20 19 23 23 H 0.97000 * 125.33262 * 179.79145 * 22 21 20 24 24 N 1.28871 * 109.32935 * 359.75743 * 22 21 20 25 25 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 26 26 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 28 28 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 29 29 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 30 30 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 31 31 H 1.08004 * 119.96818 * 0.02562 * 13 12 2 32 32 H 1.08007 * 119.85085 * 180.25843 * 14 13 12 33 33 H 1.08001 * 120.03462 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 2.6601 3.9508 4.1326 10 1 1.4298 5.6464 2.9112 11 1 0.3054 3.6291 3.6505 12 6 1.9693 -0.7278 -1.0810 13 6 1.7219 -0.3050 -2.3792 14 6 2.2219 -1.0231 -3.4481 15 6 2.9625 -2.1743 -3.2317 16 9 3.4428 -2.8735 -4.2832 17 6 3.2118 -2.6093 -1.9439 18 6 2.7170 -1.8894 -0.8592 19 6 2.9812 -2.3524 0.5254 20 7 2.5755 -1.7617 1.6586 21 7 3.0090 -2.4777 2.6399 22 7 3.6691 -3.4772 2.1686 23 1 4.1011 -4.1647 2.6993 24 7 3.6657 -3.4217 0.8810 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.0796 1.3446 -0.1082 29 1 1.5610 1.9274 -0.8310 30 1 2.9863 4.9181 0.7769 31 1 1.1416 0.5890 -2.5541 32 1 2.0307 -0.6886 -4.4571 33 1 3.7890 -3.5071 -1.7788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821597956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = 103.192611 kcal Electronic energy + Delta-G solvation = -21112.112929 eV Core-core repulsion = 17704.261457 eV Total energy + Delta-G solvation = -3407.851472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.87499 -45.25095 -40.77780 -37.41548 -35.21513 -34.59188 -34.48274 -31.69149 -30.64288 -29.02478 -26.67508 -25.76450 -25.27250 -24.18162 -22.72638 -21.79445 -20.11737 -18.61313 -18.40522 -17.95204 -17.46308 -17.20055 -16.64450 -16.50148 -15.94277 -15.40964 -15.13516 -14.94680 -14.75957 -14.20975 -14.05011 -13.66062 -13.45907 -13.11672 -12.95006 -12.77950 -12.51570 -12.39375 -12.28976 -12.14424 -11.95707 -11.85188 -11.75754 -11.29896 -10.56250 -9.94800 -9.43135 -9.03179 -8.14508 -6.21582 -0.37011 0.09092 0.35415 1.41753 1.43861 1.45500 1.56342 1.57198 2.44461 2.57066 2.73366 3.13000 3.18487 3.20988 3.47759 3.92012 3.95301 4.24554 4.31707 4.41861 4.58914 4.69915 4.77364 4.81173 5.00084 5.07982 5.11662 5.16408 5.30657 5.44211 5.70707 5.77608 5.78319 6.15041 6.28397 6.82163 6.92915 7.37699 7.46489 8.96446 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.006421 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.681377 B = 4359.677802 C = 5635.389306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.501 5.501 3 C 0.225 3.775 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.003 3.997 7 N -0.935 5.935 8 Si 0.963 3.037 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.263 1.263 12 C 0.117 3.883 13 C -0.130 4.130 14 C -0.110 4.110 15 C 0.085 3.915 16 F -0.135 7.135 17 C -0.105 4.105 18 C 0.005 3.995 19 C 0.208 3.792 20 N -0.239 5.239 21 N -0.079 5.079 22 N -0.206 5.206 23 H 0.491 0.509 24 N -0.293 5.293 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.065 0.935 28 H -0.008 1.008 29 H -0.021 1.021 30 H 0.262 0.738 31 H 0.137 0.863 32 H 0.167 0.833 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -15.849 -4.395 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.222 5.222 3 C 0.101 3.899 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.195 4.195 7 N -0.576 5.576 8 Si 0.789 3.211 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.187 1.187 12 C 0.020 3.980 13 C -0.150 4.150 14 C -0.130 4.130 15 C 0.065 3.935 16 F -0.114 7.114 17 C -0.126 4.126 18 C 0.000 4.000 19 C -0.072 4.072 20 N -0.110 5.110 21 N -0.074 5.074 22 N -0.056 5.056 23 H 0.349 0.651 24 N -0.147 5.147 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.010 0.990 29 H -0.003 1.003 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.184 0.816 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.302 -15.890 -3.305 16.232 hybrid contribution 0.209 0.687 -0.179 0.740 sum 0.511 -15.202 -3.484 15.605 Atomic orbital electron populations 1.22165 0.85571 1.00724 1.00923 1.59595 1.08585 1.15628 1.38372 1.19322 0.92968 0.82014 0.95594 1.21399 1.34206 0.96862 1.02177 0.91850 1.25800 0.95301 0.98104 1.00258 1.70078 1.39733 1.11833 1.35986 0.85471 0.78892 0.77286 0.79500 1.20593 1.20810 1.18738 1.19284 0.95353 0.92915 0.90476 1.21676 1.00869 1.00608 0.91863 1.21367 0.96949 0.93423 1.01307 1.17328 0.99785 0.93007 0.83335 1.91505 1.86466 1.78026 1.55377 1.21041 1.00782 1.01275 0.89499 1.17061 1.00933 0.95417 0.86550 1.23432 0.97859 0.90333 0.95563 1.76702 1.18446 1.20251 0.95600 1.79023 1.08161 0.96655 1.23590 1.47758 1.34299 1.20609 1.02914 0.65050 1.74780 1.22068 1.21538 0.96353 0.95545 0.91598 0.91662 0.98980 1.00314 0.92896 0.84507 0.81585 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.01 9.08 127.69 1.16 3.17 16 2 N -0.50 -21.70 2.92 -723.63 -2.11 -23.81 16 3 C 0.23 11.87 4.31 85.56 0.37 12.24 16 4 C -0.51 -28.79 8.51 25.60 0.22 -28.57 16 5 H 0.06 3.59 7.10 -2.91 -0.02 3.57 16 6 C 0.00 0.17 5.46 84.65 0.46 0.63 16 7 N -0.94 -56.25 13.29 21.45 0.28 -55.97 16 8 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 12 C 0.12 4.34 4.67 38.44 0.18 4.52 16 13 C -0.13 -4.11 8.69 22.37 0.19 -3.91 16 14 C -0.11 -2.80 10.01 22.33 0.22 -2.58 16 15 C 0.08 2.17 7.29 22.34 0.16 2.34 16 16 F -0.14 -3.26 17.26 44.97 0.78 -2.49 16 17 C -0.10 -2.86 9.67 22.51 0.22 -2.64 16 18 C 0.00 0.16 5.89 -19.93 -0.12 0.04 16 19 C 0.21 7.26 7.90 137.33 1.08 8.35 16 20 N -0.24 -9.46 10.93 -52.22 -0.57 -10.03 16 21 N -0.08 -2.57 13.47 37.02 0.50 -2.07 16 22 N -0.21 -4.80 7.90 37.02 0.29 -4.51 16 23 H 0.49 5.67 8.96 -347.53 -3.12 2.56 16 24 N -0.29 -8.18 12.08 -52.17 -0.63 -8.81 16 25 H 0.03 0.94 7.46 -2.39 -0.02 0.92 16 26 H 0.07 2.21 8.13 -2.38 -0.02 2.19 16 27 H 0.06 2.68 6.86 -2.39 -0.02 2.67 16 28 H -0.01 -0.47 8.06 -2.39 -0.02 -0.49 16 29 H -0.02 -1.14 7.49 -2.38 -0.02 -1.15 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.14 4.34 7.15 -2.91 -0.02 4.32 16 32 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.16 3.72 7.88 -2.91 -0.02 3.69 16 Total: -1.00 -69.74 295.64 2.77 -66.96 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -1.94 Total: 0.08 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 4.15 Total: -6.42 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -2.24 Total: -105.19 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.74 2.77 -66.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.155 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds