Wall clock time and date at job start Mon Mar 30 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47380 * 2 1 4 4 C 1.50704 * 109.47189 * 239.99446 * 2 1 3 5 5 H 1.07995 * 120.00487 * 245.45721 * 4 2 1 6 6 C 1.37882 * 119.99648 * 65.46178 * 4 2 1 7 7 N 1.31512 * 119.99972 * 9.55363 * 6 4 2 8 8 Si 1.86793 * 119.99761 * 189.55011 * 6 4 2 9 9 H 1.48501 * 109.47283 * 84.99493 * 8 6 4 10 10 H 1.48504 * 109.47074 * 204.99301 * 8 6 4 11 11 H 1.48500 * 109.47506 * 324.99494 * 8 6 4 12 12 O 1.45201 * 109.47437 * 119.99813 * 2 1 3 13 13 C 1.34233 * 116.99956 * 270.00259 * 12 2 1 14 14 O 1.20824 * 119.99713 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99991 * 179.97438 * 13 12 2 16 16 C 1.50702 * 109.47096 * 179.97438 * 15 13 12 17 17 C 1.38353 * 119.85566 * 269.73248 * 16 15 13 18 18 C 1.37958 * 120.14783 * 179.72369 * 17 16 15 19 19 C 1.39583 * 119.84832 * 0.54394 * 18 17 16 20 20 C 1.47850 * 120.14108 * 179.70352 * 19 18 17 21 21 N 1.34777 * 119.99973 * 0.02562 * 20 19 18 22 22 O 1.21554 * 119.99613 * 180.02562 * 20 19 18 23 23 C 1.39574 * 119.71026 * 359.72581 * 19 18 17 24 24 C 1.37958 * 119.85625 * 0.02562 * 23 19 18 25 25 H 1.08998 * 109.46856 * 303.66632 * 1 2 3 26 26 H 1.08999 * 109.47040 * 63.66775 * 1 2 3 27 27 H 1.08998 * 109.46873 * 183.66622 * 1 2 3 28 28 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.46980 * 299.99907 * 15 13 12 30 30 H 1.09003 * 109.47054 * 59.99759 * 15 13 12 31 31 H 1.08002 * 119.92600 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.07973 * 180.24764 * 18 17 16 33 33 H 0.97000 * 120.00118 * 0.02562 * 21 20 19 34 34 H 0.97003 * 119.99433 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.07320 * 179.97438 * 23 19 18 36 36 H 1.08000 * 119.92997 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6371 -1.1338 6 6 1.7946 -0.1775 -2.4796 7 7 1.2992 1.0354 -2.5936 8 14 2.1762 -1.1782 -4.0100 9 1 1.0243 -2.0613 -4.3240 10 1 2.4228 -0.2616 -5.1521 11 1 3.3847 -2.0073 -3.7709 12 8 2.0141 -0.6844 1.1856 13 6 2.2172 0.0641 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7184 -0.5770 3.5495 16 6 2.8615 0.4733 4.6207 17 6 4.0601 1.1485 4.7675 18 6 4.1959 2.1151 5.7424 19 6 3.1243 2.4033 6.5891 20 6 3.2648 3.4333 7.6404 21 7 4.4294 4.0967 7.7823 22 8 2.3301 3.6818 8.3765 23 6 1.9196 1.7144 6.4393 24 6 1.7954 0.7537 5.4570 25 1 -0.3633 0.5697 0.8553 26 1 -0.3633 0.4558 -0.9210 27 1 -0.3633 -1.0256 0.0657 28 1 1.1316 1.4102 -3.4724 29 1 2.0089 -1.3367 3.8774 30 1 3.6873 -1.0407 3.3640 31 1 4.8900 0.9212 4.1148 32 1 5.1308 2.6444 5.8534 33 1 5.1752 3.8987 7.1946 34 1 4.5214 4.7728 8.4718 35 1 1.0868 1.9324 7.0914 36 1 0.8640 0.2197 5.3402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821624863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:43 Heat of formation + Delta-G solvation = -112.169249 kcal Electronic energy + Delta-G solvation = -20411.201517 eV Core-core repulsion = 17052.886057 eV Total energy + Delta-G solvation = -3358.315460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36241 -39.56934 -38.29482 -35.75656 -34.14506 -33.26478 -32.74279 -31.02823 -29.85037 -28.13346 -25.31427 -23.70829 -22.80021 -21.72596 -20.53289 -19.57788 -18.38961 -17.08334 -16.99831 -16.66196 -15.69641 -15.49552 -15.22700 -15.10646 -14.90155 -14.59297 -14.33475 -13.71940 -13.43105 -13.03723 -12.55859 -12.43366 -12.09977 -11.82143 -11.70847 -11.29229 -11.11808 -11.06336 -10.84261 -10.48703 -10.33767 -10.27280 -9.98008 -9.73988 -9.54799 -9.08364 -8.98675 -8.87153 -8.50824 -6.22812 -4.26989 0.67646 1.29005 2.66452 2.95428 3.23369 3.26832 3.28795 3.31447 3.54748 3.93949 4.33111 4.49247 4.60213 4.71812 4.84676 5.11045 5.16374 5.23413 5.47381 5.53514 5.62776 5.80651 5.89165 6.11645 6.19329 6.43585 6.50429 6.56821 6.74830 6.79661 6.83157 7.06388 7.09276 7.52810 7.64636 7.84289 8.00808 8.09661 8.60185 8.86539 9.37406 10.86460 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038311 B = 0.003155 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.687818 B = 8871.498955 C = 8923.592837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.214 3.786 3 H 0.053 0.947 4 C -0.525 4.525 5 H 0.069 0.931 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.909 3.091 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.272 1.272 12 O -0.357 6.357 13 C 0.452 3.548 14 O -0.513 6.513 15 C -0.085 4.085 16 C -0.034 4.034 17 C -0.112 4.112 18 C -0.084 4.084 19 C -0.147 4.147 20 C 0.567 3.433 21 N -0.853 5.853 22 O -0.544 6.544 23 C -0.056 4.056 24 C -0.112 4.112 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.267 0.733 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.401 0.599 34 H 0.403 0.597 35 H 0.136 0.864 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 0.050 16.919 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.563 4.563 5 H 0.087 0.913 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.735 3.265 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.196 1.196 12 O -0.273 6.273 13 C 0.294 3.706 14 O -0.402 6.402 15 C -0.123 4.123 16 C -0.035 4.035 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.150 4.150 20 C 0.353 3.647 21 N -0.417 5.417 22 O -0.422 6.422 23 C -0.075 4.075 24 C -0.130 4.130 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.231 0.769 34 H 0.234 0.766 35 H 0.154 0.846 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.215 0.577 17.088 18.192 hybrid contribution 0.539 -0.065 -1.040 1.174 sum 6.754 0.511 16.048 17.419 Atomic orbital electron populations 1.22083 0.97944 0.99564 1.01113 1.20641 0.90961 0.94486 0.77780 0.92884 1.20978 1.37329 1.09017 0.89009 0.91287 1.24908 0.95041 0.94785 0.99096 1.69987 1.43944 1.13793 1.24560 0.86344 0.78939 0.79740 0.81448 1.20218 1.21067 1.19650 1.86478 1.75838 1.43679 1.21336 1.23078 0.75439 0.86085 0.85971 1.90640 1.48174 1.16780 1.84624 1.20396 1.04931 0.97324 0.89618 1.19643 0.93816 0.95677 0.94329 1.20978 0.97761 0.96174 0.98041 1.21175 0.97554 0.96938 0.94598 1.19816 0.96213 1.00094 0.98897 1.18333 0.82302 0.80815 0.83218 1.43757 1.15306 1.43123 1.39471 1.90805 1.39118 1.66577 1.45653 1.21200 0.96409 0.93303 0.96597 1.21044 0.98496 0.98270 0.95160 0.96029 0.89946 0.94172 0.92352 0.86963 0.86898 0.85133 0.85666 0.76900 0.76566 0.84622 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.43 37.16 0.35 -3.33 16 2 C 0.21 5.65 2.42 -27.88 -0.07 5.58 16 3 H 0.05 1.57 7.10 -51.93 -0.37 1.20 16 4 C -0.53 -14.57 8.82 -34.44 -0.30 -14.87 16 5 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.89 -25.25 12.16 55.43 0.67 -24.57 16 8 Si 0.91 20.81 29.55 -169.99 -5.02 15.79 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 12 O -0.36 -8.18 9.86 -39.27 -0.39 -8.57 16 13 C 0.45 8.91 7.92 36.01 0.29 9.20 16 14 O -0.51 -11.77 15.25 -18.75 -0.29 -12.06 16 15 C -0.09 -1.12 5.94 -29.03 -0.17 -1.29 16 16 C -0.03 -0.44 4.38 -104.53 -0.46 -0.90 16 17 C -0.11 -1.30 9.68 -39.64 -0.38 -1.68 16 18 C -0.08 -0.86 9.54 -39.18 -0.37 -1.23 16 19 C -0.15 -1.76 5.87 -104.96 -0.62 -2.37 16 20 C 0.57 6.72 8.05 -12.33 -0.10 6.62 16 21 N -0.85 -6.22 8.82 30.53 0.27 -5.96 16 22 O -0.54 -8.46 17.18 5.32 0.09 -8.37 16 23 C -0.06 -0.71 9.60 -39.19 -0.38 -1.09 16 24 C -0.11 -1.40 9.68 -39.64 -0.38 -1.79 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 2.16 6.83 -51.93 -0.35 1.81 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.11 1.22 8.08 -51.93 -0.42 0.80 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 0.82 6.41 -52.48 -0.34 0.49 16 33 H 0.40 1.86 6.86 -40.82 -0.28 1.58 16 34 H 0.40 2.34 8.93 -40.82 -0.36 1.98 16 35 H 0.14 1.65 7.65 -52.49 -0.40 1.24 16 36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -34.65 319.13 -6.72 -41.37 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.18 Total: 3.03 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.69 Total: -5.48 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.94 Total: -30.53 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.58 Total: -28.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.65 -6.72 -41.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.798 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds