Wall clock time and date at job start Mon Mar 30 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47380 * 2 1 4 4 C 1.50704 * 109.47189 * 239.99446 * 2 1 3 5 5 H 1.07995 * 120.00487 * 245.45721 * 4 2 1 6 6 C 1.37882 * 119.99648 * 65.46178 * 4 2 1 7 7 N 1.31512 * 119.99972 * 9.55363 * 6 4 2 8 8 Si 1.86793 * 119.99761 * 189.55011 * 6 4 2 9 9 H 1.48501 * 109.47283 * 84.99493 * 8 6 4 10 10 H 1.48504 * 109.47074 * 204.99301 * 8 6 4 11 11 H 1.48500 * 109.47506 * 324.99494 * 8 6 4 12 12 O 1.45201 * 109.47437 * 119.99813 * 2 1 3 13 13 C 1.34233 * 116.99956 * 270.00259 * 12 2 1 14 14 O 1.20824 * 119.99713 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99991 * 179.97438 * 13 12 2 16 16 C 1.50702 * 109.47096 * 179.97438 * 15 13 12 17 17 C 1.38353 * 119.85566 * 269.73248 * 16 15 13 18 18 C 1.37958 * 120.14783 * 179.72369 * 17 16 15 19 19 C 1.39583 * 119.84832 * 0.54394 * 18 17 16 20 20 C 1.47850 * 120.14108 * 179.70352 * 19 18 17 21 21 N 1.34777 * 119.99973 * 0.02562 * 20 19 18 22 22 O 1.21554 * 119.99613 * 180.02562 * 20 19 18 23 23 C 1.39574 * 119.71026 * 359.72581 * 19 18 17 24 24 C 1.37958 * 119.85625 * 0.02562 * 23 19 18 25 25 H 1.08998 * 109.46856 * 303.66632 * 1 2 3 26 26 H 1.08999 * 109.47040 * 63.66775 * 1 2 3 27 27 H 1.08998 * 109.46873 * 183.66622 * 1 2 3 28 28 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.46980 * 299.99907 * 15 13 12 30 30 H 1.09003 * 109.47054 * 59.99759 * 15 13 12 31 31 H 1.08002 * 119.92600 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.07973 * 180.24764 * 18 17 16 33 33 H 0.97000 * 120.00118 * 0.02562 * 21 20 19 34 34 H 0.97003 * 119.99433 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.07320 * 179.97438 * 23 19 18 36 36 H 1.08000 * 119.92997 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6371 -1.1338 6 6 1.7946 -0.1775 -2.4796 7 7 1.2992 1.0354 -2.5936 8 14 2.1762 -1.1782 -4.0100 9 1 1.0243 -2.0613 -4.3240 10 1 2.4228 -0.2616 -5.1521 11 1 3.3847 -2.0073 -3.7709 12 8 2.0141 -0.6844 1.1856 13 6 2.2172 0.0641 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7184 -0.5770 3.5495 16 6 2.8615 0.4733 4.6207 17 6 4.0601 1.1485 4.7675 18 6 4.1959 2.1151 5.7424 19 6 3.1243 2.4033 6.5891 20 6 3.2648 3.4333 7.6404 21 7 4.4294 4.0967 7.7823 22 8 2.3301 3.6818 8.3765 23 6 1.9196 1.7144 6.4393 24 6 1.7954 0.7537 5.4570 25 1 -0.3633 0.5697 0.8553 26 1 -0.3633 0.4558 -0.9210 27 1 -0.3633 -1.0256 0.0657 28 1 1.1316 1.4102 -3.4724 29 1 2.0089 -1.3367 3.8774 30 1 3.6873 -1.0407 3.3640 31 1 4.8900 0.9212 4.1148 32 1 5.1308 2.6444 5.8534 33 1 5.1752 3.8987 7.1946 34 1 4.5214 4.7728 8.4718 35 1 1.0868 1.9324 7.0914 36 1 0.8640 0.2197 5.3402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821624863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:42 Heat of formation + Delta-G solvation = -135.912744 kcal Electronic energy + Delta-G solvation = -20412.231112 eV Core-core repulsion = 17052.886057 eV Total energy + Delta-G solvation = -3359.345055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51383 -40.93442 -39.34117 -37.51368 -35.27437 -35.02292 -33.79171 -31.91300 -31.79960 -29.25739 -27.40649 -24.89005 -23.68923 -23.32197 -21.68259 -21.06931 -19.21876 -18.81912 -18.46046 -17.92148 -17.21305 -17.00998 -16.50520 -16.11257 -15.96863 -15.83353 -15.71846 -14.83011 -14.64071 -14.39555 -14.18116 -13.91649 -13.43459 -13.42232 -12.96645 -12.90281 -12.77660 -12.67382 -12.48112 -12.15358 -12.01521 -11.56570 -11.36003 -11.24374 -10.98517 -10.77180 -10.59477 -9.97159 -9.84640 -8.30486 -6.44120 -0.26572 0.39726 1.39363 1.43077 1.45677 1.55542 1.68754 2.16127 2.44166 2.50866 2.90431 3.01823 3.52782 3.76662 3.88686 3.99468 4.10314 4.26363 4.36363 4.54096 4.58621 4.61504 4.75873 4.78576 4.83203 5.01604 5.14628 5.22437 5.31081 5.47535 5.50757 5.58488 5.81204 5.87188 5.89463 6.12973 6.36954 6.62532 7.01110 7.24199 7.27504 8.79374 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038311 B = 0.003155 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.687818 B = 8871.498955 C = 8923.592837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.216 3.784 3 H 0.010 0.990 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 0.980 3.020 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.262 1.262 12 O -0.363 6.363 13 C 0.447 3.553 14 O -0.550 6.550 15 C -0.070 4.070 16 C -0.053 4.053 17 C -0.120 4.120 18 C -0.076 4.076 19 C -0.157 4.157 20 C 0.563 3.437 21 N -0.828 5.828 22 O -0.589 6.589 23 C -0.074 4.074 24 C -0.121 4.121 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.270 0.730 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.417 0.583 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -1.072 17.017 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.163 3.837 3 H 0.028 0.972 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.803 3.197 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.186 1.186 12 O -0.279 6.279 13 C 0.291 3.709 14 O -0.441 6.441 15 C -0.107 4.107 16 C -0.054 4.054 17 C -0.137 4.137 18 C -0.094 4.094 19 C -0.160 4.160 20 C 0.350 3.650 21 N -0.392 5.392 22 O -0.471 6.471 23 C -0.093 4.093 24 C -0.138 4.138 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.149 0.851 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.963 -0.544 17.206 18.967 hybrid contribution 0.073 0.367 -0.977 1.046 sum 8.036 -0.177 16.229 18.111 Atomic orbital electron populations 1.21913 0.97014 1.00327 1.00256 1.20303 0.91690 0.92407 0.79320 0.97179 1.21287 1.38054 1.09289 0.90045 0.91157 1.25854 0.94485 0.95659 1.02307 1.70111 1.44641 1.15384 1.25520 0.85242 0.79243 0.78193 0.77038 1.19177 1.20633 1.18639 1.86467 1.76247 1.43753 1.21482 1.24381 0.74093 0.85813 0.86574 1.90623 1.49756 1.18633 1.85124 1.20513 1.06820 0.97558 0.85815 1.19762 0.94609 0.96437 0.94542 1.21323 0.97910 0.96040 0.98469 1.21548 0.98443 0.96269 0.93141 1.20001 0.96555 1.00093 0.99325 1.18415 0.82832 0.80975 0.82778 1.43557 1.14295 1.41997 1.39368 1.90784 1.40915 1.68081 1.47338 1.21305 0.97009 0.93992 0.96990 1.21201 0.99008 0.98422 0.95216 0.95454 0.91983 0.92619 0.92084 0.84129 0.83882 0.83326 0.81765 0.75020 0.75387 0.85134 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.87 9.43 71.98 0.68 -6.19 16 2 C 0.22 11.65 2.42 29.85 0.07 11.72 16 3 H 0.01 0.64 7.10 -2.39 -0.02 0.62 16 4 C -0.55 -30.62 8.82 25.60 0.23 -30.40 16 5 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 6 C 0.02 0.93 5.17 84.66 0.44 1.37 16 7 N -0.92 -53.15 12.16 21.45 0.26 -52.89 16 8 Si 0.98 42.18 29.55 68.60 2.03 44.20 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 12 O -0.36 -16.59 9.86 -51.44 -0.51 -17.10 16 13 C 0.45 17.40 7.92 71.24 0.56 17.96 16 14 O -0.55 -25.64 15.25 21.97 0.34 -25.31 16 15 C -0.07 -1.70 5.94 29.10 0.17 -1.53 16 16 C -0.05 -1.29 4.38 -19.81 -0.09 -1.38 16 17 C -0.12 -2.50 9.68 22.23 0.22 -2.29 16 18 C -0.08 -1.36 9.54 22.53 0.21 -1.15 16 19 C -0.16 -3.57 5.87 -20.09 -0.12 -3.69 16 20 C 0.56 12.83 8.05 86.79 0.70 13.52 16 21 N -0.83 -10.23 8.82 -175.60 -1.55 -11.78 16 22 O -0.59 -18.49 17.18 -3.88 -0.07 -18.55 16 23 C -0.07 -1.87 9.60 22.53 0.22 -1.66 16 24 C -0.12 -2.96 9.68 22.23 0.22 -2.74 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 3.33 6.83 -2.39 -0.02 3.31 16 27 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.14 2.62 8.08 -2.39 -0.02 2.60 16 30 H 0.14 2.62 8.08 -2.39 -0.02 2.60 16 31 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.16 1.50 6.41 -2.91 -0.02 1.48 16 33 H 0.42 2.49 6.86 -92.71 -0.64 1.85 16 34 H 0.41 3.93 8.93 -92.71 -0.83 3.10 16 35 H 0.13 3.32 7.65 -2.91 -0.02 3.30 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.32 319.13 3.67 -73.65 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.34 Total: 14.21 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 3.51 Total: -6.44 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.29 Total: -64.67 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -0.24 Total: -60.96 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -77.32 3.67 -73.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.260 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds