Wall clock time and date at job start Mon Mar 30 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 5 5 H 1.07998 * 120.00571 * 119.99773 * 4 2 1 6 6 C 1.37887 * 119.99671 * 299.99295 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46793 * 90.00407 * 8 6 4 10 10 H 1.48497 * 109.47311 * 210.00105 * 8 6 4 11 11 H 1.48491 * 109.47214 * 330.00626 * 8 6 4 12 12 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 13 13 C 1.34222 * 117.00137 * 90.00375 * 12 2 1 14 14 O 1.20833 * 119.99852 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00432 * 179.71953 * 13 12 2 16 16 C 1.50703 * 109.47478 * 180.27536 * 15 13 12 17 17 C 1.38357 * 119.85091 * 269.73305 * 16 15 13 18 18 C 1.37964 * 120.14104 * 179.72759 * 17 16 15 19 19 C 1.39576 * 119.84978 * 0.54018 * 18 17 16 20 20 C 1.47845 * 120.14569 * 179.71093 * 19 18 17 21 21 N 1.34777 * 119.99480 * 0.02562 * 20 19 18 22 22 O 1.21548 * 120.00451 * 180.02562 * 20 19 18 23 23 C 1.39577 * 119.71411 * 359.72938 * 19 18 17 24 24 C 1.37958 * 119.85065 * 0.02562 * 23 19 18 25 25 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 26 26 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 28 28 H 0.96993 * 119.99970 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47190 * 300.28287 * 15 13 12 30 30 H 1.09006 * 109.46468 * 60.27870 * 15 13 12 31 31 H 1.07998 * 119.93161 * 359.97438 * 17 16 15 32 32 H 1.08000 * 120.07668 * 180.25140 * 18 17 16 33 33 H 0.96995 * 120.00565 * 0.02562 * 21 20 19 34 34 H 0.97006 * 120.00060 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.07502 * 179.97438 * 23 19 18 36 36 H 1.08009 * 119.92705 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.6295 -0.5459 4.4125 10 1 1.3429 -0.9491 5.1121 11 1 2.4855 -2.5661 3.7121 12 8 2.0139 -0.6846 -1.1855 13 6 2.2171 0.0638 -2.2811 14 8 1.9983 1.2517 -2.2504 15 6 2.7247 -0.5763 -3.5474 16 6 2.8724 0.4747 -4.6173 17 6 1.8120 0.7515 -5.4618 18 6 1.9387 1.7164 -6.4397 19 6 3.1438 2.4059 -6.5833 20 6 3.2889 3.4366 -7.6332 21 7 2.2560 3.7126 -8.4539 22 8 4.3396 4.0352 -7.7563 23 6 4.2114 2.1178 -5.7317 24 6 4.0697 1.1541 -4.7546 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 0.7082 1.1610 3.4843 29 1 3.6927 -1.0400 -3.3574 30 1 2.0169 -1.3359 -3.8795 31 1 0.8817 0.2139 -5.3527 32 1 1.1089 1.9344 -7.0957 33 1 1.4174 3.2352 -8.3555 34 1 2.3512 4.3886 -9.1430 35 1 5.1466 2.6475 -5.8379 36 1 4.8953 0.9299 -4.0952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821624864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:44 Heat of formation + Delta-G solvation = -110.875875 kcal Electronic energy + Delta-G solvation = -20413.849676 eV Core-core repulsion = 17055.590301 eV Total energy + Delta-G solvation = -3358.259375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36669 -39.57341 -38.29897 -35.76148 -34.15018 -33.30640 -32.74971 -31.03192 -29.74448 -28.11670 -25.34801 -23.70575 -22.80404 -21.70210 -20.52966 -19.57297 -18.39492 -17.08648 -16.98566 -16.69503 -15.60878 -15.57617 -15.19729 -15.16533 -14.90704 -14.57639 -14.34694 -13.74053 -13.41608 -13.04392 -12.55039 -12.44228 -12.08499 -11.75331 -11.69457 -11.24103 -11.12116 -11.07188 -10.87760 -10.39218 -10.30903 -10.27569 -9.98506 -9.73771 -9.56928 -9.08564 -8.94675 -8.87668 -8.51747 -6.20835 -4.28036 0.67338 1.28570 2.66180 2.94940 3.23110 3.26327 3.28597 3.32273 3.54588 3.93671 4.32959 4.48809 4.59526 4.71254 4.84332 5.12159 5.16073 5.23228 5.46450 5.54346 5.62886 5.80638 5.88731 6.10972 6.19405 6.43439 6.50022 6.60579 6.75315 6.84974 6.88282 7.05916 7.13941 7.57348 7.69806 7.91182 8.00464 8.11257 8.60121 8.85316 9.37622 10.86590 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038333 B = 0.003149 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.259904 B = 8889.656314 C = 8937.281158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.357 6.357 13 C 0.452 3.548 14 O -0.514 6.514 15 C -0.085 4.085 16 C -0.034 4.034 17 C -0.112 4.112 18 C -0.084 4.084 19 C -0.147 4.147 20 C 0.566 3.434 21 N -0.853 5.853 22 O -0.543 6.543 23 C -0.056 4.056 24 C -0.111 4.111 25 H 0.015 0.985 26 H 0.037 0.963 27 H 0.099 0.901 28 H 0.266 0.734 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.403 0.597 35 H 0.136 0.864 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -0.827 -19.047 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.273 6.273 13 C 0.294 3.706 14 O -0.403 6.403 15 C -0.123 4.123 16 C -0.035 4.035 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.150 4.150 20 C 0.353 3.647 21 N -0.417 5.417 22 O -0.421 6.421 23 C -0.075 4.075 24 C -0.129 4.129 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.231 0.769 34 H 0.234 0.766 35 H 0.154 0.846 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.116 -0.074 -18.767 18.801 hybrid contribution -0.332 -0.191 0.694 0.793 sum 0.783 -0.266 -18.073 18.092 Atomic orbital electron populations 1.22160 0.97577 1.00087 1.01408 1.20639 0.91378 0.93925 0.77725 0.93558 1.21032 1.32563 1.13515 0.88896 0.91286 1.24899 0.94902 0.95106 0.99104 1.69896 1.35974 1.22592 1.24220 0.86266 0.78566 0.79885 0.81378 1.20379 1.20938 1.19576 1.86477 1.75837 1.43693 1.21321 1.23073 0.75439 0.86066 0.85978 1.90639 1.48299 1.16763 1.84613 1.20398 1.04894 0.97301 0.89685 1.19642 0.93837 0.95667 0.94315 1.20960 0.98472 0.98304 0.95298 1.21165 0.95976 0.95279 0.97890 1.19814 0.96043 0.99854 0.99308 1.18331 0.83311 0.82067 0.80968 1.43756 1.16288 1.44289 1.37343 1.90806 1.27821 1.51876 1.71594 1.21211 0.98284 0.95319 0.92650 1.21065 0.97748 0.96052 0.98030 0.96559 0.94415 0.88244 0.92369 0.86859 0.86995 0.85222 0.85692 0.76925 0.76567 0.84591 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.32 37.16 0.35 -3.53 16 2 C 0.22 5.72 2.56 -27.88 -0.07 5.65 16 3 H 0.05 1.37 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.53 8.90 -34.43 -0.31 -14.83 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.91 20.91 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 O -0.36 -8.21 9.86 -39.24 -0.39 -8.60 16 13 C 0.45 8.92 7.92 36.00 0.29 9.21 16 14 O -0.51 -11.78 15.25 -18.76 -0.29 -12.06 16 15 C -0.09 -1.13 5.94 -29.04 -0.17 -1.30 16 16 C -0.03 -0.44 4.38 -104.53 -0.46 -0.90 16 17 C -0.11 -1.28 9.68 -39.64 -0.38 -1.67 16 18 C -0.08 -0.85 9.54 -39.18 -0.37 -1.23 16 19 C -0.15 -1.75 5.87 -104.97 -0.62 -2.37 16 20 C 0.57 6.71 8.05 -12.33 -0.10 6.61 16 21 N -0.85 -6.15 8.82 30.53 0.27 -5.88 16 22 O -0.54 -8.47 17.18 5.32 0.09 -8.38 16 23 C -0.06 -0.71 9.60 -39.18 -0.38 -1.09 16 24 C -0.11 -1.41 9.68 -39.64 -0.38 -1.80 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 30 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 0.80 6.41 -52.49 -0.34 0.46 16 33 H 0.40 1.80 6.86 -40.82 -0.28 1.52 16 34 H 0.40 2.31 8.93 -40.82 -0.36 1.95 16 35 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -34.57 317.80 -6.76 -41.34 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.14 Total: 3.08 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.70 Total: -5.63 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.90 Total: -30.43 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.58 Total: -29.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.57 -6.76 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.539 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds