Wall clock time and date at job start Mon Mar 30 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47278 * 2 1 4 4 C 1.50704 * 109.46771 * 120.00163 * 2 1 3 5 5 H 1.07998 * 120.00571 * 119.99773 * 4 2 1 6 6 C 1.37887 * 119.99671 * 299.99295 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46793 * 90.00407 * 8 6 4 10 10 H 1.48497 * 109.47311 * 210.00105 * 8 6 4 11 11 H 1.48491 * 109.47214 * 330.00626 * 8 6 4 12 12 O 1.45201 * 109.46934 * 239.99568 * 2 1 3 13 13 C 1.34222 * 117.00137 * 90.00375 * 12 2 1 14 14 O 1.20833 * 119.99852 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00432 * 179.71953 * 13 12 2 16 16 C 1.50703 * 109.47478 * 180.27536 * 15 13 12 17 17 C 1.38357 * 119.85091 * 269.73305 * 16 15 13 18 18 C 1.37964 * 120.14104 * 179.72759 * 17 16 15 19 19 C 1.39576 * 119.84978 * 0.54018 * 18 17 16 20 20 C 1.47845 * 120.14569 * 179.71093 * 19 18 17 21 21 N 1.34777 * 119.99480 * 0.02562 * 20 19 18 22 22 O 1.21548 * 120.00451 * 180.02562 * 20 19 18 23 23 C 1.39577 * 119.71411 * 359.72938 * 19 18 17 24 24 C 1.37958 * 119.85065 * 0.02562 * 23 19 18 25 25 H 1.09005 * 109.47320 * 59.99859 * 1 2 3 26 26 H 1.08999 * 109.47835 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47062 * 300.00770 * 1 2 3 28 28 H 0.96993 * 119.99970 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47190 * 300.28287 * 15 13 12 30 30 H 1.09006 * 109.46468 * 60.27870 * 15 13 12 31 31 H 1.07998 * 119.93161 * 359.97438 * 17 16 15 32 32 H 1.08000 * 120.07668 * 180.25140 * 18 17 16 33 33 H 0.96995 * 120.00565 * 0.02562 * 21 20 19 34 34 H 0.97006 * 120.00060 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.07502 * 179.97438 * 23 19 18 36 36 H 1.08009 * 119.92705 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3211 -1.1203 4.0081 9 1 3.6295 -0.5459 4.4125 10 1 1.3429 -0.9491 5.1121 11 1 2.4855 -2.5661 3.7121 12 8 2.0139 -0.6846 -1.1855 13 6 2.2171 0.0638 -2.2811 14 8 1.9983 1.2517 -2.2504 15 6 2.7247 -0.5763 -3.5474 16 6 2.8724 0.4747 -4.6173 17 6 1.8120 0.7515 -5.4618 18 6 1.9387 1.7164 -6.4397 19 6 3.1438 2.4059 -6.5833 20 6 3.2889 3.4366 -7.6332 21 7 2.2560 3.7126 -8.4539 22 8 4.3396 4.0352 -7.7563 23 6 4.2114 2.1178 -5.7317 24 6 4.0697 1.1541 -4.7546 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 0.7082 1.1610 3.4843 29 1 3.6927 -1.0400 -3.3574 30 1 2.0169 -1.3359 -3.8795 31 1 0.8817 0.2139 -5.3527 32 1 1.1089 1.9344 -7.0957 33 1 1.4174 3.2352 -8.3555 34 1 2.3512 4.3886 -9.1430 35 1 5.1466 2.6475 -5.8379 36 1 4.8953 0.9299 -4.0952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821624864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:44 Heat of formation + Delta-G solvation = -134.545053 kcal Electronic energy + Delta-G solvation = -20414.876049 eV Core-core repulsion = 17055.590301 eV Total energy + Delta-G solvation = -3359.285747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51849 -40.93840 -39.34456 -37.52285 -35.32115 -35.02562 -33.79268 -31.91368 -31.69493 -29.25001 -27.44732 -24.88146 -23.69007 -23.30278 -21.68013 -21.07119 -19.21965 -18.81870 -18.47891 -17.92524 -17.23175 -16.98304 -16.54681 -16.10826 -15.99654 -15.83836 -15.69037 -14.84387 -14.66631 -14.31479 -14.22177 -13.87748 -13.45383 -13.31736 -12.99405 -12.90420 -12.81977 -12.69082 -12.37024 -12.14540 -12.01747 -11.57392 -11.37292 -11.24411 -10.97168 -10.77166 -10.59674 -9.97322 -9.84858 -8.28587 -6.45440 -0.26701 0.39540 1.38604 1.42832 1.44299 1.55870 1.68723 2.15705 2.43863 2.50742 2.90241 3.02462 3.52547 3.76451 3.88952 3.99472 4.10219 4.26362 4.36383 4.55705 4.58273 4.61384 4.78433 4.80249 4.86482 5.01375 5.18360 5.22583 5.31121 5.49833 5.50706 5.64937 5.81332 5.88143 5.94718 6.12390 6.37379 6.60893 7.00384 7.24488 7.27189 8.78986 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038333 B = 0.003149 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.259904 B = 8889.656314 C = 8937.281158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.261 1.261 12 O -0.363 6.363 13 C 0.447 3.553 14 O -0.550 6.550 15 C -0.070 4.070 16 C -0.053 4.053 17 C -0.117 4.117 18 C -0.075 4.075 19 C -0.157 4.157 20 C 0.563 3.437 21 N -0.827 5.827 22 O -0.590 6.590 23 C -0.075 4.075 24 C -0.123 4.123 25 H 0.025 0.975 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.270 0.730 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.417 0.583 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -2.254 -19.976 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.806 3.194 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.185 1.185 12 O -0.280 6.280 13 C 0.292 3.708 14 O -0.442 6.442 15 C -0.107 4.107 16 C -0.053 4.053 17 C -0.135 4.135 18 C -0.093 4.093 19 C -0.160 4.160 20 C 0.350 3.650 21 N -0.392 5.392 22 O -0.472 6.472 23 C -0.094 4.094 24 C -0.141 4.141 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.147 0.853 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.210 -1.514 -19.746 19.805 hybrid contribution -0.094 0.322 0.867 0.930 sum 0.116 -1.192 -18.878 18.916 Atomic orbital electron populations 1.21973 0.96705 1.00481 1.00796 1.20298 0.92050 0.91920 0.79274 0.97742 1.21336 1.33350 1.13918 0.90000 0.91275 1.25845 0.94728 0.95682 1.02223 1.70020 1.36621 1.23764 1.25193 0.85186 0.78056 0.79031 0.77173 1.19887 1.20129 1.18477 1.86467 1.76265 1.43779 1.21478 1.24376 0.74096 0.85799 0.86575 1.90621 1.49854 1.18560 1.85118 1.20515 1.06589 0.97648 0.85971 1.19759 0.94458 0.96207 0.94920 1.21328 0.98769 0.98468 0.94957 1.21562 0.96212 0.93837 0.97712 1.19998 0.96610 1.00144 0.99213 1.18415 0.83490 0.81764 0.81348 1.43548 1.15759 1.43781 1.36083 1.90785 1.29817 1.53596 1.72979 1.21294 0.98765 0.95824 0.93475 1.21199 0.98338 0.96267 0.98260 0.95613 0.93338 0.90342 0.92042 0.84527 0.83512 0.82988 0.81599 0.74988 0.75386 0.85291 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.17 9.32 71.98 0.67 -6.50 16 2 C 0.22 11.80 2.56 29.85 0.08 11.88 16 3 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 4 C -0.55 -30.80 8.90 25.60 0.23 -30.58 16 5 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 8 Si 0.98 42.49 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 O -0.36 -16.70 9.86 -51.34 -0.51 -17.20 16 13 C 0.45 17.41 7.92 71.23 0.56 17.98 16 14 O -0.55 -25.57 15.25 21.94 0.33 -25.24 16 15 C -0.07 -1.71 5.94 29.10 0.17 -1.53 16 16 C -0.05 -1.29 4.38 -19.81 -0.09 -1.37 16 17 C -0.12 -2.36 9.68 22.23 0.22 -2.14 16 18 C -0.07 -1.30 9.54 22.53 0.21 -1.09 16 19 C -0.16 -3.55 5.87 -20.09 -0.12 -3.67 16 20 C 0.56 12.78 8.05 86.79 0.70 13.47 16 21 N -0.83 -9.96 8.82 -175.61 -1.55 -11.51 16 22 O -0.59 -18.59 17.18 -3.87 -0.07 -18.66 16 23 C -0.07 -1.92 9.60 22.53 0.22 -1.70 16 24 C -0.12 -3.10 9.68 22.23 0.22 -2.88 16 25 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.08 4.30 6.07 -2.38 -0.01 4.28 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.14 2.70 8.08 -2.39 -0.02 2.68 16 30 H 0.15 2.56 8.08 -2.38 -0.02 2.54 16 31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.17 1.37 6.41 -2.91 -0.02 1.35 16 33 H 0.42 2.26 6.86 -92.71 -0.64 1.63 16 34 H 0.41 3.82 8.93 -92.70 -0.83 2.99 16 35 H 0.13 3.37 7.65 -2.91 -0.02 3.35 16 36 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.38 317.80 3.66 -73.71 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.33 Total: 13.66 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 3.52 Total: -6.88 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -1.31 Total: -63.91 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -0.24 Total: -61.10 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -77.38 3.66 -73.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.833 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds