Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00199 * 2 1 4 4 H 1.07999 * 120.00195 * 202.16484 * 3 2 1 5 5 C 1.38812 * 119.99738 * 22.15902 * 3 2 1 6 6 N 1.31627 * 120.00222 * 11.28362 * 5 3 2 7 7 Si 1.86797 * 120.00064 * 191.28146 * 5 3 2 8 8 H 1.48496 * 109.47165 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47373 * 120.00184 * 7 5 3 10 10 H 1.48497 * 109.47499 * 240.00313 * 7 5 3 11 11 C 1.46503 * 120.00231 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47126 * 269.99952 * 11 2 1 13 13 C 1.38283 * 119.95301 * 260.00008 * 12 11 2 14 14 C 1.38314 * 120.26199 * 179.72325 * 13 12 11 15 15 C 1.38042 * 120.17059 * 359.97438 * 14 13 12 16 16 C 1.39261 * 119.90923 * 0.02562 * 15 14 13 17 17 C 1.48434 * 120.13404 * 180.02562 * 16 15 14 18 18 N 1.34047 * 126.67944 * 179.68315 * 17 16 15 19 19 N 1.28989 * 107.27373 * 179.89349 * 18 17 16 20 20 N 1.28730 * 108.94201 * 0.37505 * 19 18 17 21 21 H 0.96999 * 125.34235 * 179.78026 * 20 19 18 22 22 N 1.28873 * 109.31828 * 359.76526 * 20 19 18 23 23 C 1.38253 * 119.95345 * 79.72103 * 12 11 2 24 24 F 1.35105 * 120.08780 * 0.27579 * 23 12 11 25 25 H 1.09005 * 109.47077 * 274.47927 * 1 2 3 26 26 H 1.08999 * 109.47605 * 34.48197 * 1 2 3 27 27 H 1.09006 * 109.47259 * 154.48039 * 1 2 3 28 28 H 0.96990 * 120.00037 * 179.97438 * 6 5 3 29 29 H 1.08991 * 109.47428 * 149.99712 * 11 2 1 30 30 H 1.09001 * 109.47091 * 29.99664 * 11 2 1 31 31 H 1.08000 * 119.87210 * 359.74258 * 13 12 11 32 32 H 1.07997 * 119.91189 * 180.02562 * 14 13 12 33 33 H 1.08007 * 120.05025 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1698 1.2204 -0.3529 5 6 1.5325 2.3436 0.4534 6 7 0.3804 2.2709 1.0858 7 14 2.3370 4.0048 0.1663 8 1 3.6168 3.8156 -0.5627 9 1 1.4305 4.8612 -0.6402 10 1 2.6031 4.6585 1.4728 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 6 3.6837 -1.4838 2.0018 14 6 3.9194 -1.8759 3.3070 15 6 2.9222 -2.4899 4.0379 16 6 1.6758 -2.7155 3.4591 17 6 0.5997 -3.3747 4.2405 18 7 -0.6428 -3.6493 3.8189 19 7 -1.2602 -4.2240 4.7948 20 7 -0.4621 -4.3106 5.8011 21 1 -0.6839 -4.7001 6.6613 22 7 0.6781 -3.7989 5.4862 23 6 1.4423 -2.3188 2.1419 24 9 0.2357 -2.5342 1.5735 25 1 -0.3633 0.0803 1.0246 26 1 -0.3634 0.8471 -0.5818 27 1 -0.3634 -0.9274 -0.4428 28 1 -0.0507 3.0798 1.4029 29 1 3.1498 -1.1382 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 4.4672 -1.0032 1.4347 32 1 4.8859 -1.7005 3.7559 33 1 3.1085 -2.7956 5.0569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825887092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 134.079250 kcal Electronic energy + Delta-G solvation = -21237.291872 eV Core-core repulsion = 17830.779745 eV Total energy + Delta-G solvation = -3406.512126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.18914 -44.30514 -38.67152 -35.62337 -34.24700 -33.46529 -31.85242 -30.12819 -29.90761 -26.09471 -25.68220 -24.56470 -24.22507 -21.94591 -21.50919 -20.17262 -19.13414 -17.04702 -17.02460 -16.62199 -15.88242 -15.71303 -15.11044 -14.66040 -14.15050 -13.90225 -13.46995 -13.32324 -13.11331 -12.66792 -12.23081 -12.10908 -11.92463 -11.40718 -11.22909 -11.16256 -11.05104 -10.91895 -10.74628 -10.64221 -10.52269 -10.21673 -9.96958 -9.90321 -8.57177 -8.33931 -8.12485 -6.80470 -5.74065 -3.18780 0.90037 1.36109 1.67637 2.31258 2.57804 3.36904 3.43594 3.45728 3.82191 4.04856 4.31461 4.49541 4.77119 5.23402 5.25915 5.37392 5.50656 5.57961 5.65037 5.69868 5.78160 6.07366 6.26502 6.42294 6.48542 6.50448 6.62143 6.71705 6.89972 6.96681 7.29980 7.44895 7.76482 7.86688 8.27857 8.36369 9.20400 9.82546 10.31976 11.29584 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.005398 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.171212 B = 5185.432175 C = 5477.218939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.587 5.587 3 C -0.254 4.254 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.900 5.900 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.181 3.819 12 C -0.119 4.119 13 C -0.060 4.060 14 C -0.138 4.138 15 C -0.074 4.074 16 C -0.070 4.070 17 C 0.232 3.768 18 N -0.254 5.254 19 N -0.056 5.056 20 N -0.235 5.235 21 H 0.472 0.528 22 N -0.300 5.300 23 C 0.154 3.846 24 F -0.116 7.116 25 H 0.030 0.970 26 H 0.045 0.955 27 H 0.002 0.998 28 H 0.253 0.747 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -12.529 7.668 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.307 5.307 3 C -0.384 4.384 4 H 0.090 0.910 5 C -0.196 4.196 6 N -0.544 5.544 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.053 3.947 12 C -0.124 4.124 13 C -0.080 4.080 14 C -0.156 4.156 15 C -0.095 4.095 16 C -0.074 4.074 17 C -0.047 4.047 18 N -0.126 5.126 19 N -0.051 5.051 20 N -0.080 5.080 21 H 0.326 0.674 22 N -0.152 5.152 23 C 0.132 3.868 24 F -0.094 7.094 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.909 -12.599 7.738 15.069 hybrid contribution 0.324 1.011 0.746 1.297 sum 3.233 -11.588 8.483 14.720 Atomic orbital electron populations 1.20864 0.81788 0.95818 0.99622 1.44211 1.02240 1.00148 1.84137 1.19297 0.98240 0.84965 1.35903 0.91012 1.25104 0.97602 0.98689 0.98166 1.70110 1.17427 1.27086 1.39767 0.86169 0.78716 0.84153 0.77419 1.20182 1.21563 1.21721 1.19973 0.97206 0.89006 0.88496 1.21329 0.92200 0.96361 1.02516 1.21059 0.96168 0.96178 0.94628 1.21000 0.99215 1.00650 0.94755 1.20780 0.90790 0.98228 0.99676 1.17216 0.91953 1.06339 0.91941 1.23542 0.93110 0.99645 0.88422 1.76303 1.04221 1.12680 1.19442 1.78921 1.19822 1.14483 0.91915 1.47682 1.05627 1.39178 1.15494 0.67438 1.74875 1.07356 1.16758 1.16228 1.17403 0.81743 0.97818 0.89849 1.91550 1.41560 1.91998 1.84332 0.95168 0.93608 0.97897 0.93669 0.91999 0.92825 0.85078 0.85456 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.14 59.84 0.49 4.69 16 2 N -0.59 -14.78 2.91 -182.50 -0.53 -15.32 16 3 C -0.25 -6.84 9.68 -15.06 -0.15 -6.98 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.43 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.90 -26.50 10.57 55.49 0.59 -25.92 16 7 Si 0.91 21.63 29.57 -169.99 -5.03 16.60 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.18 3.70 5.55 -5.19 -0.03 3.67 16 12 C -0.12 -2.30 5.46 -104.60 -0.57 -2.87 16 13 C -0.06 -1.00 9.66 -39.54 -0.38 -1.38 16 14 C -0.14 -1.99 10.03 -39.62 -0.40 -2.39 16 15 C -0.07 -1.12 9.70 -39.27 -0.38 -1.50 16 16 C -0.07 -1.25 5.88 -104.83 -0.62 -1.87 16 17 C 0.23 4.02 7.92 -156.31 -1.24 2.78 16 18 N -0.25 -4.62 11.23 32.15 0.36 -4.26 16 19 N -0.06 -0.83 13.47 60.35 0.81 -0.01 16 20 N -0.23 -2.64 7.90 60.35 0.48 -2.17 16 21 H 0.47 2.65 8.96 -340.37 -3.05 -0.40 16 22 N -0.30 -4.24 12.08 32.17 0.39 -3.86 16 23 C 0.15 3.08 7.22 -39.09 -0.28 2.80 16 24 F -0.12 -2.49 14.28 2.25 0.03 -2.46 16 25 H 0.03 0.86 7.41 -51.93 -0.38 0.47 16 26 H 0.05 1.25 7.19 -51.93 -0.37 0.87 16 27 H 0.00 0.06 7.78 -51.93 -0.40 -0.35 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 29 H 0.06 1.15 7.89 -51.93 -0.41 0.74 16 30 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 31 H 0.13 1.95 8.03 -52.49 -0.42 1.53 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.67 7.88 -52.48 -0.41 1.25 16 LS Contribution 294.74 15.07 4.44 4.44 Total: -1.00 -33.11 294.74 -7.93 -41.04 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.83 Total: -5.06 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.65 Total: -3.04 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 2.09 Total: -51.53 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.03 Total: -2.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.11 -7.93 -41.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825887092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.118 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds