Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36938 * 120.00199 * 2 1 4 4 H 1.07999 * 120.00195 * 202.16484 * 3 2 1 5 5 C 1.38812 * 119.99738 * 22.15902 * 3 2 1 6 6 N 1.31627 * 120.00222 * 11.28362 * 5 3 2 7 7 Si 1.86797 * 120.00064 * 191.28146 * 5 3 2 8 8 H 1.48496 * 109.47165 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47373 * 120.00184 * 7 5 3 10 10 H 1.48497 * 109.47499 * 240.00313 * 7 5 3 11 11 C 1.46503 * 120.00231 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47126 * 269.99952 * 11 2 1 13 13 C 1.38283 * 119.95301 * 260.00008 * 12 11 2 14 14 C 1.38314 * 120.26199 * 179.72325 * 13 12 11 15 15 C 1.38042 * 120.17059 * 359.97438 * 14 13 12 16 16 C 1.39261 * 119.90923 * 0.02562 * 15 14 13 17 17 C 1.48434 * 120.13404 * 180.02562 * 16 15 14 18 18 N 1.34047 * 126.67944 * 179.68315 * 17 16 15 19 19 N 1.28989 * 107.27373 * 179.89349 * 18 17 16 20 20 N 1.28730 * 108.94201 * 0.37505 * 19 18 17 21 21 H 0.96999 * 125.34235 * 179.78026 * 20 19 18 22 22 N 1.28873 * 109.31828 * 359.76526 * 20 19 18 23 23 C 1.38253 * 119.95345 * 79.72103 * 12 11 2 24 24 F 1.35105 * 120.08780 * 0.27579 * 23 12 11 25 25 H 1.09005 * 109.47077 * 274.47927 * 1 2 3 26 26 H 1.08999 * 109.47605 * 34.48197 * 1 2 3 27 27 H 1.09006 * 109.47259 * 154.48039 * 1 2 3 28 28 H 0.96990 * 120.00037 * 179.97438 * 6 5 3 29 29 H 1.08991 * 109.47428 * 149.99712 * 11 2 1 30 30 H 1.09001 * 109.47091 * 29.99664 * 11 2 1 31 31 H 1.08000 * 119.87210 * 359.74258 * 13 12 11 32 32 H 1.07997 * 119.91189 * 180.02562 * 14 13 12 33 33 H 1.08007 * 120.05025 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1698 1.2204 -0.3529 5 6 1.5325 2.3436 0.4534 6 7 0.3804 2.2709 1.0858 7 14 2.3370 4.0048 0.1663 8 1 3.6168 3.8156 -0.5627 9 1 1.4305 4.8612 -0.6402 10 1 2.6031 4.6585 1.4728 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4201 13 6 3.6837 -1.4838 2.0018 14 6 3.9194 -1.8759 3.3070 15 6 2.9222 -2.4899 4.0379 16 6 1.6758 -2.7155 3.4591 17 6 0.5997 -3.3747 4.2405 18 7 -0.6428 -3.6493 3.8189 19 7 -1.2602 -4.2240 4.7948 20 7 -0.4621 -4.3106 5.8011 21 1 -0.6839 -4.7001 6.6613 22 7 0.6781 -3.7989 5.4862 23 6 1.4423 -2.3188 2.1419 24 9 0.2357 -2.5342 1.5735 25 1 -0.3633 0.0803 1.0246 26 1 -0.3634 0.8471 -0.5818 27 1 -0.3634 -0.9274 -0.4428 28 1 -0.0507 3.0798 1.4029 29 1 3.1498 -1.1382 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 4.4672 -1.0032 1.4347 32 1 4.8859 -1.7005 3.7559 33 1 3.1085 -2.7956 5.0569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825887092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 112.133201 kcal Electronic energy + Delta-G solvation = -21238.243524 eV Core-core repulsion = 17830.779745 eV Total energy + Delta-G solvation = -3407.463779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.70240 -45.47694 -40.00951 -37.43334 -35.46677 -34.76230 -33.56743 -31.71893 -31.25006 -28.01673 -27.44590 -25.80344 -25.47736 -23.66550 -22.82206 -21.70573 -20.27048 -18.78317 -18.23876 -18.18650 -17.21209 -17.19142 -16.77158 -16.38403 -15.40296 -15.36340 -15.17831 -15.02002 -14.82823 -14.06476 -13.77532 -13.44988 -13.32817 -13.07113 -12.81932 -12.72120 -12.53577 -12.41418 -12.35381 -12.07839 -12.04740 -11.90966 -11.82188 -11.75727 -10.63878 -9.66859 -9.47651 -8.81624 -7.79224 -5.28246 -0.33614 0.15748 0.35342 1.28458 1.40415 1.49263 1.50956 1.61170 2.52839 2.60434 2.75908 3.08259 3.36693 3.44964 3.85169 3.94126 4.00473 4.19058 4.37216 4.38355 4.44426 4.67781 4.85845 4.94346 4.98070 5.21308 5.24590 5.33020 5.42605 5.59740 5.61899 5.66648 5.72811 5.99268 6.33033 7.09007 7.14993 7.85394 8.32425 9.24859 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.005398 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.171212 B = 5185.432175 C = 5477.218939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.605 5.605 3 C -0.254 4.254 4 H 0.085 0.915 5 C -0.056 4.056 6 N -0.942 5.942 7 Si 0.971 3.029 8 H -0.257 1.257 9 H -0.297 1.297 10 H -0.295 1.295 11 C 0.180 3.820 12 C -0.139 4.139 13 C -0.062 4.062 14 C -0.124 4.124 15 C -0.062 4.062 16 C -0.082 4.082 17 C 0.211 3.789 18 N -0.297 5.297 19 N -0.060 5.060 20 N -0.197 5.197 21 H 0.496 0.504 22 N -0.284 5.284 23 C 0.121 3.879 24 F -0.136 7.136 25 H -0.005 1.005 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.245 0.755 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -13.326 9.210 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.103 0.897 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.799 3.201 8 H -0.181 1.181 9 H -0.224 1.224 10 H -0.223 1.223 11 C 0.054 3.946 12 C -0.143 4.143 13 C -0.082 4.082 14 C -0.141 4.141 15 C -0.082 4.082 16 C -0.086 4.086 17 C -0.069 4.069 18 N -0.169 5.169 19 N -0.055 5.055 20 N -0.048 5.048 21 H 0.355 0.645 22 N -0.137 5.137 23 C 0.098 3.902 24 F -0.115 7.115 25 H 0.013 0.987 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.190 0.810 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.563 -13.460 9.293 17.276 hybrid contribution -0.432 1.022 0.411 1.183 sum 5.131 -12.438 9.704 16.589 Atomic orbital electron populations 1.20450 0.83016 0.95344 0.97043 1.44293 1.01845 1.01513 1.84997 1.19682 0.98450 0.85721 1.34507 0.89706 1.25877 0.98327 1.02119 0.98762 1.70309 1.19341 1.27193 1.42077 0.85144 0.78314 0.79805 0.76843 1.18110 1.22397 1.22274 1.20041 0.97542 0.87142 0.89857 1.21192 0.93651 0.98084 1.01409 1.21398 0.95439 0.95544 0.95820 1.21479 1.00705 0.98377 0.93584 1.21225 0.89556 0.96637 1.00831 1.17485 0.93315 1.06375 0.91433 1.23577 0.93029 1.00847 0.89397 1.76293 1.05187 1.14292 1.21111 1.78852 1.19875 1.14557 0.92174 1.47757 1.04376 1.36865 1.15837 0.64486 1.74812 1.07964 1.16189 1.14759 1.17777 0.81430 0.99734 0.91220 1.91486 1.42793 1.92424 1.84777 0.98698 0.96244 0.96157 0.94597 0.89951 0.92529 0.83171 0.81020 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.02 8.14 127.77 1.04 11.06 16 2 N -0.61 -30.81 2.91 -731.31 -2.13 -32.94 16 3 C -0.25 -13.59 9.68 84.03 0.81 -12.77 16 4 H 0.09 4.22 7.84 -2.91 -0.02 4.20 16 5 C -0.06 -3.16 5.13 84.86 0.44 -2.72 16 6 N -0.94 -57.47 10.57 21.65 0.23 -57.24 16 7 Si 0.97 44.78 29.57 68.60 2.03 46.81 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 9 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 11 C 0.18 7.32 5.55 85.63 0.48 7.79 16 12 C -0.14 -5.29 5.46 -19.85 -0.11 -5.40 16 13 C -0.06 -1.90 9.66 22.30 0.22 -1.68 16 14 C -0.12 -3.06 10.03 22.24 0.22 -2.84 16 15 C -0.06 -1.68 9.70 22.47 0.22 -1.46 16 16 C -0.08 -2.85 5.88 -20.00 -0.12 -2.96 16 17 C 0.21 7.13 7.92 137.37 1.09 8.22 16 18 N -0.30 -10.88 11.23 -52.20 -0.59 -11.47 16 19 N -0.06 -1.71 13.47 37.02 0.50 -1.21 16 20 N -0.20 -4.01 7.90 37.02 0.29 -3.71 16 21 H 0.50 4.12 8.96 -347.54 -3.12 1.00 16 22 N -0.28 -7.39 12.08 -52.14 -0.63 -8.02 16 23 C 0.12 4.85 7.22 22.59 0.16 5.02 16 24 F -0.14 -6.11 14.28 44.97 0.64 -5.47 16 25 H -0.01 -0.32 7.41 -2.38 -0.02 -0.34 16 26 H 0.02 1.09 7.19 -2.39 -0.02 1.08 16 27 H 0.02 0.97 7.78 -2.38 -0.02 0.96 16 28 H 0.24 14.57 8.31 -92.72 -0.77 13.80 16 29 H 0.08 2.94 7.89 -2.39 -0.02 2.93 16 30 H 0.06 2.21 7.67 -2.39 -0.02 2.19 16 31 H 0.15 3.94 8.03 -2.91 -0.02 3.92 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.16 3.36 7.88 -2.91 -0.02 3.33 16 Total: -1.00 -74.45 294.74 2.84 -71.60 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -1.95 Total: -0.62 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.45 Total: 2.25 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -2.32 Total: -114.58 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.64 Total: -5.47 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.45 2.84 -71.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825887092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.738 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds