Wall clock time and date at job start Mon Mar 30 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47050 * 239.99602 * 2 1 3 5 5 C 1.50700 * 109.46898 * 65.00235 * 4 2 1 6 6 O 1.20823 * 120.00174 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99774 * 180.02562 * 5 4 2 8 8 C 1.50709 * 109.47003 * 119.99738 * 2 1 3 9 9 O 1.21279 * 119.99614 * 119.99990 * 8 2 1 10 10 N 1.34774 * 119.99856 * 299.99721 * 8 2 1 11 11 C 1.39237 * 120.00020 * 175.70884 * 10 8 2 12 12 C 1.39478 * 119.83628 * 215.02380 * 11 10 8 13 13 C 1.36371 * 120.17297 * 179.75789 * 12 11 10 14 14 C 1.40876 * 119.82663 * 0.51055 * 13 12 11 15 15 C 1.41147 * 120.16681 * 179.71826 * 14 13 12 16 16 H 1.08000 * 120.00063 * 214.79756 * 15 14 13 17 17 C 1.39911 * 119.99920 * 34.79995 * 15 14 13 18 18 N 1.30873 * 119.99930 * 355.57311 * 17 15 14 19 19 Si 1.86797 * 120.00071 * 175.57028 * 17 15 14 20 20 H 1.48503 * 109.46915 * 60.00016 * 19 17 15 21 21 H 1.48498 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47047 * 300.00093 * 19 17 15 23 23 C 1.40871 * 119.66869 * 359.74020 * 14 13 12 24 24 C 1.36377 * 119.82927 * 0.02562 * 23 14 13 25 25 H 1.09002 * 109.46954 * 300.00353 * 1 2 3 26 26 H 1.09001 * 109.46977 * 60.00168 * 1 2 3 27 27 H 1.08998 * 109.47181 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46842 * 185.00138 * 4 2 1 29 29 H 1.08995 * 109.46994 * 305.00239 * 4 2 1 30 30 H 0.96695 * 116.99920 * 180.02562 * 7 5 4 31 31 H 0.97000 * 120.00287 * 355.70904 * 10 8 2 32 32 H 1.08004 * 119.91285 * 0.02562 * 12 11 10 33 33 H 1.07998 * 120.09075 * 180.24765 * 13 12 11 34 34 H 0.96998 * 120.00164 * 180.02562 * 18 17 15 35 35 H 1.08004 * 120.08287 * 179.97438 * 23 14 13 36 36 H 1.07995 * 119.91472 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0134 1.0830 -2.3638 7 8 1.9831 -0.3903 -3.6952 8 6 2.0324 -0.7104 1.2306 9 8 2.7296 -1.6965 1.1193 10 7 1.7068 -0.2498 2.4546 11 6 2.0954 -0.9557 3.5901 12 6 1.2604 -0.9877 4.7069 13 6 1.6320 -1.6810 5.8209 14 6 2.8677 -2.3571 5.8457 15 6 3.2621 -3.0719 6.9971 16 1 4.3036 -3.1070 7.2806 17 6 2.3038 -3.7352 7.7712 18 7 1.0333 -3.6218 7.4781 19 14 2.8376 -4.7826 9.2228 20 1 3.5668 -3.9370 10.2018 21 1 1.6406 -5.3728 9.8741 22 1 3.7296 -5.8702 8.7469 23 6 3.7080 -2.3158 4.7158 24 6 3.3205 -1.6222 3.6073 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2055 29 1 1.6054 -1.7198 -1.2950 30 1 1.7054 0.1432 -4.4523 31 1 1.2017 0.5734 2.5446 32 1 0.3151 -0.4657 4.6878 33 1 0.9826 -1.7083 6.6834 34 1 0.3688 -4.0813 8.0150 35 1 4.6569 -2.8313 4.7277 36 1 3.9638 -1.5892 2.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827311919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:06 Heat of formation + Delta-G solvation = -137.331823 kcal Electronic energy + Delta-G solvation = -20584.790721 eV Core-core repulsion = 17225.384130 eV Total energy + Delta-G solvation = -3359.406591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71049 -40.95395 -39.14726 -37.24426 -36.19117 -35.38156 -34.57901 -31.48283 -30.81871 -29.31715 -27.03385 -25.21420 -23.43399 -22.79715 -21.91110 -20.63719 -19.33864 -19.16897 -18.28182 -18.10771 -17.08699 -17.04769 -16.80124 -16.27936 -15.72498 -15.24084 -15.15061 -14.54548 -14.42992 -14.14161 -13.95331 -13.66253 -13.56981 -13.24708 -13.20808 -12.85209 -12.75299 -12.48705 -12.36330 -12.28711 -12.15561 -11.76892 -11.50281 -11.38014 -11.19474 -10.75706 -10.52050 -9.45560 -8.72265 -8.49649 -6.32462 0.80069 1.15020 1.20692 1.40138 1.46599 1.51846 1.75333 1.94878 2.24723 2.55720 2.81611 3.45174 3.67786 3.88431 3.90828 4.26202 4.40773 4.48870 4.55226 4.59709 4.67139 4.90216 4.95060 5.01149 5.15014 5.15706 5.24567 5.35748 5.44568 5.66542 5.70798 5.91774 6.03087 6.14450 6.40079 6.67256 6.72213 6.97534 7.00747 7.02524 7.36779 8.42757 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.048366 B = 0.003186 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.784257 B = 8787.411391 C = 9024.747765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.122 0.878 4 C -0.099 4.099 5 C 0.494 3.506 6 O -0.537 6.537 7 O -0.513 6.513 8 C 0.506 3.494 9 O -0.570 6.570 10 N -0.642 5.642 11 C 0.020 3.980 12 C -0.119 4.119 13 C -0.160 4.160 14 C 0.067 3.933 15 C -0.499 4.499 16 H 0.072 0.928 17 C 0.028 3.972 18 N -0.841 5.841 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.265 1.265 23 C -0.221 4.221 24 C -0.097 4.097 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.429 0.571 31 H 0.417 0.583 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.285 0.715 35 H 0.096 0.904 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 7.557 -14.873 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.140 0.860 4 C -0.137 4.137 5 C 0.338 3.662 6 O -0.428 6.428 7 O -0.327 6.327 8 C 0.295 3.705 9 O -0.449 6.449 10 N -0.286 5.286 11 C -0.073 4.073 12 C -0.139 4.139 13 C -0.180 4.180 14 C 0.065 3.935 15 C -0.530 4.530 16 H 0.091 0.909 17 C -0.184 4.184 18 N -0.469 5.469 19 Si 0.809 3.191 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.190 1.190 23 C -0.241 4.241 24 C -0.117 4.117 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.291 0.709 31 H 0.255 0.745 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.403 6.846 -14.556 16.264 hybrid contribution -0.153 0.029 0.293 0.332 sum -2.556 6.875 -14.263 16.038 Atomic orbital electron populations 1.21925 0.91223 1.02774 1.04610 1.20994 0.98992 1.01070 0.89505 0.86008 1.21101 1.05053 1.00031 0.87468 1.23205 0.74814 0.83027 0.85138 1.90690 1.38793 1.25781 1.87497 1.84508 1.74396 1.56652 1.17183 1.21122 0.79950 0.84254 0.85192 1.90685 1.38961 1.28246 1.87004 1.42900 1.55673 1.26377 1.03676 1.17332 0.95394 1.05874 0.88726 1.20567 0.98286 1.01484 0.93544 1.21177 0.99165 0.98959 0.98691 1.18032 0.92676 0.90237 0.92551 1.19707 0.95235 1.29418 1.08639 0.90943 1.26727 0.94324 0.97138 1.00205 1.69818 1.02143 1.37183 1.37768 0.85165 0.78632 0.78290 0.77046 1.18273 1.19267 1.19001 1.20941 1.01939 1.06990 0.94222 1.20532 0.95167 0.98762 0.97205 0.90627 0.89648 0.92708 0.86593 0.86795 0.70854 0.74544 0.85795 0.86407 0.90485 0.88598 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.84 71.98 0.64 -2.18 16 2 C -0.08 -1.79 2.37 -11.54 -0.03 -1.81 16 3 H 0.12 2.22 7.96 -2.39 -0.02 2.21 16 4 C -0.10 -1.92 4.63 29.85 0.14 -1.79 16 5 C 0.49 8.72 8.05 71.24 0.57 9.30 16 6 O -0.54 -11.61 14.72 21.97 0.32 -11.28 16 7 O -0.51 -6.71 13.42 -51.40 -0.69 -7.40 16 8 C 0.51 15.64 6.99 87.66 0.61 16.25 16 9 O -0.57 -22.43 13.34 -3.02 -0.04 -22.47 16 10 N -0.64 -20.41 5.16 -303.11 -1.57 -21.98 16 11 C 0.02 0.86 6.30 38.56 0.24 1.11 16 12 C -0.12 -5.26 9.90 22.13 0.22 -5.04 16 13 C -0.16 -8.32 8.62 22.48 0.19 -8.12 16 14 C 0.07 3.71 5.55 -21.28 -0.12 3.60 16 15 C -0.50 -27.50 9.02 23.39 0.21 -27.29 16 16 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 17 C 0.03 1.44 5.42 85.24 0.46 1.90 16 18 N -0.84 -44.46 10.60 21.82 0.23 -44.23 16 19 Si 0.99 39.19 29.56 68.60 2.03 41.22 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 23 C -0.22 -11.45 9.74 22.48 0.22 -11.23 16 24 C -0.10 -4.59 8.61 22.13 0.19 -4.40 16 25 H 0.07 1.27 7.67 -2.39 -0.02 1.25 16 26 H 0.08 1.60 5.96 -2.39 -0.01 1.59 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.12 2.29 7.95 -2.39 -0.02 2.27 16 29 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.43 1.72 9.10 -74.06 -0.67 1.05 16 31 H 0.42 9.93 8.37 -92.71 -0.78 9.15 16 32 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.12 6.40 6.13 -2.91 -0.02 6.38 16 34 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 35 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.11 5.15 6.22 -2.91 -0.02 5.13 16 Total: -1.00 -69.15 310.08 3.53 -65.62 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.31 Total: 30.22 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 3.55 Total: -29.71 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.33 Total: -66.20 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.41 Total: -41.15 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -69.15 3.53 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827311919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.711 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds