Wall clock time and date at job start Mon Mar 30 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47029 * 2 1 4 4 C 1.53004 * 109.47131 * 120.00043 * 2 1 3 5 5 C 1.50693 * 109.46841 * 295.00163 * 4 2 1 6 6 O 1.20827 * 120.00574 * 359.97438 * 5 4 2 7 7 O 1.34230 * 119.99568 * 180.02562 * 5 4 2 8 8 C 1.50708 * 109.47289 * 240.00064 * 2 1 3 9 9 O 1.21273 * 119.99971 * 239.99929 * 8 2 1 10 10 N 1.34779 * 119.99582 * 59.99763 * 8 2 1 11 11 C 1.39243 * 119.99619 * 176.70645 * 10 8 2 12 12 C 1.39477 * 119.83374 * 217.48334 * 11 10 8 13 13 C 1.36374 * 120.16728 * 179.71678 * 12 11 10 14 14 C 1.40870 * 119.82658 * 0.58190 * 13 12 11 15 15 C 1.41153 * 120.16027 * 179.67360 * 14 13 12 16 16 H 1.08008 * 119.99332 * 157.92784 * 15 14 13 17 17 C 1.39901 * 120.00452 * 337.92852 * 15 14 13 18 18 N 1.30871 * 119.99695 * 327.63780 * 17 15 14 19 19 Si 1.86789 * 120.00275 * 147.63626 * 17 15 14 20 20 H 1.48500 * 109.47243 * 94.98605 * 19 17 15 21 21 H 1.48506 * 109.47413 * 214.98639 * 19 17 15 22 22 H 1.48503 * 109.47425 * 334.98665 * 19 17 15 23 23 C 1.40871 * 119.67236 * 359.69266 * 14 13 12 24 24 C 1.36372 * 119.82689 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46955 * 60.00088 * 1 2 3 27 27 H 1.08997 * 109.47593 * 299.99772 * 1 2 3 28 28 H 1.08999 * 109.47109 * 55.00277 * 4 2 1 29 29 H 1.09001 * 109.46915 * 174.99768 * 4 2 1 30 30 H 0.96702 * 116.99745 * 179.97438 * 7 5 4 31 31 H 0.96996 * 119.99866 * 356.71195 * 10 8 2 32 32 H 1.08001 * 119.91259 * 0.02562 * 12 11 10 33 33 H 1.08001 * 120.08386 * 180.25118 * 13 12 11 34 34 H 0.97005 * 120.00175 * 180.02562 * 18 17 15 35 35 H 1.08000 * 120.08271 * 179.97438 * 23 14 13 36 36 H 1.07998 * 119.91409 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 8 1.0140 1.0835 2.3637 7 8 1.9839 -0.3896 3.6951 8 6 2.0324 -0.7104 -1.2305 9 8 2.7296 -1.6964 -1.1192 10 7 1.7067 -0.2499 -2.4546 11 6 2.2264 -0.8648 -3.5907 12 6 2.5886 -0.0919 -4.6938 13 6 3.1037 -0.6864 -5.8078 14 6 3.2580 -2.0861 -5.8471 15 6 3.7839 -2.7095 -6.9992 16 1 4.2320 -3.6895 -6.9259 17 6 3.7249 -2.0580 -8.2358 18 7 2.7223 -1.2625 -8.5091 19 14 5.0770 -2.3235 -9.4969 20 1 4.6699 -3.3949 -10.4411 21 1 5.3080 -1.0633 -10.2479 22 1 6.3284 -2.7234 -8.8044 23 6 2.8845 -2.8605 -4.7312 24 6 2.3763 -2.2511 -3.6221 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 1.7061 0.1438 4.4523 31 1 1.1104 0.5099 -2.5441 32 1 2.4655 0.9807 -4.6637 33 1 3.3875 -0.0863 -6.6596 34 1 2.6812 -0.8110 -9.3667 35 1 2.9996 -3.9341 -4.7544 36 1 2.0891 -2.8435 -2.7660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827311920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:08 Heat of formation + Delta-G solvation = -139.705762 kcal Electronic energy + Delta-G solvation = -20544.182223 eV Core-core repulsion = 17184.672691 eV Total energy + Delta-G solvation = -3359.509533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68283 -40.92173 -39.13170 -37.23967 -36.21923 -35.36594 -34.67003 -31.47492 -30.93138 -29.32266 -27.01417 -25.20103 -23.48833 -22.75707 -21.93531 -20.58575 -19.35068 -19.19613 -18.33886 -18.09601 -17.08890 -17.04139 -16.77696 -16.26511 -15.77334 -15.23634 -15.18567 -14.67312 -14.43175 -14.02624 -13.94676 -13.76184 -13.66689 -13.30727 -13.24180 -12.83632 -12.67660 -12.40413 -12.33031 -12.27577 -12.12766 -11.88668 -11.57484 -11.51148 -11.10954 -10.67995 -10.43630 -9.47255 -9.00694 -8.72432 -6.23089 0.82457 1.14368 1.20902 1.37518 1.42969 1.55065 1.79732 1.94366 2.20055 2.57919 2.65724 3.46804 3.70271 3.86904 3.94451 4.27384 4.39824 4.48982 4.51146 4.60358 4.67906 4.90508 4.91480 5.00974 5.11490 5.16780 5.25108 5.29239 5.45541 5.64711 5.66886 5.88044 6.03124 6.09918 6.36008 6.61662 6.74135 6.89567 6.99417 7.02672 7.40906 8.20555 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.052120 B = 0.003135 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.093279 B = 8929.243051 C = 9155.802372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.118 0.882 4 C -0.098 4.098 5 C 0.494 3.506 6 O -0.537 6.537 7 O -0.513 6.513 8 C 0.506 3.494 9 O -0.572 6.572 10 N -0.641 5.641 11 C -0.009 4.009 12 C -0.101 4.101 13 C -0.190 4.190 14 C 0.084 3.916 15 C -0.505 4.505 16 H 0.075 0.925 17 C 0.052 3.948 18 N -0.798 5.798 19 Si 0.971 3.029 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.262 1.262 23 C -0.245 4.245 24 C -0.075 4.075 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.429 0.571 31 H 0.414 0.586 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.294 0.706 35 H 0.092 0.908 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 5.725 15.137 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.136 0.864 4 C -0.136 4.136 5 C 0.338 3.662 6 O -0.428 6.428 7 O -0.327 6.327 8 C 0.294 3.706 9 O -0.452 6.452 10 N -0.285 5.285 11 C -0.102 4.102 12 C -0.121 4.121 13 C -0.210 4.210 14 C 0.081 3.919 15 C -0.533 4.533 16 H 0.093 0.907 17 C -0.168 4.168 18 N -0.422 5.422 19 Si 0.791 3.209 20 H -0.184 1.184 21 H -0.185 1.185 22 H -0.186 1.186 23 C -0.265 4.265 24 C -0.095 4.095 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.291 0.709 31 H 0.252 0.748 32 H 0.140 0.860 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.170 5.243 14.715 15.940 hybrid contribution 0.044 0.385 -0.348 0.521 sum -3.126 5.628 14.367 15.744 Atomic orbital electron populations 1.21930 0.91110 1.02949 1.04560 1.20995 0.99095 1.00916 0.89612 0.86393 1.21098 1.04948 1.00122 0.87422 1.23219 0.74794 0.83043 0.85146 1.90692 1.38875 1.25745 1.87500 1.84510 1.74355 1.56678 1.17177 1.21089 0.79679 0.84644 0.85162 1.90682 1.39744 1.27713 1.87022 1.42853 1.47719 1.34265 1.03667 1.17128 1.12802 0.91214 0.89075 1.20451 0.99836 0.98486 0.93293 1.20647 1.08002 0.94402 0.97950 1.17909 0.88766 0.92525 0.92706 1.19711 1.36113 1.04526 0.92926 0.90714 1.26718 0.96608 0.92569 1.00860 1.69941 1.26196 1.21920 1.24111 0.85375 0.78946 0.79364 0.77184 1.18415 1.18520 1.18554 1.20732 1.11264 0.97992 0.96505 1.20418 0.99053 0.93484 0.96523 0.92329 0.90726 0.89704 0.86527 0.86823 0.70863 0.74841 0.85996 0.88444 0.89484 0.88979 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.83 71.98 0.64 -2.14 16 2 C -0.08 -1.84 2.38 -11.54 -0.03 -1.87 16 3 H 0.12 2.31 7.96 -2.39 -0.02 2.29 16 4 C -0.10 -1.93 4.63 29.85 0.14 -1.80 16 5 C 0.49 8.84 8.05 71.23 0.57 9.41 16 6 O -0.54 -11.80 14.73 21.96 0.32 -11.48 16 7 O -0.51 -6.77 13.42 -51.41 -0.69 -7.46 16 8 C 0.51 15.90 6.96 87.66 0.61 16.51 16 9 O -0.57 -22.72 13.54 -3.01 -0.04 -22.76 16 10 N -0.64 -20.95 5.21 -303.11 -1.58 -22.53 16 11 C -0.01 -0.39 6.25 38.56 0.24 -0.15 16 12 C -0.10 -4.50 9.90 22.13 0.22 -4.28 16 13 C -0.19 -9.83 8.74 22.48 0.20 -9.63 16 14 C 0.08 4.60 5.57 -21.27 -0.12 4.48 16 15 C -0.51 -27.55 8.94 23.39 0.21 -27.34 16 16 H 0.07 4.00 8.02 -2.91 -0.02 3.98 16 17 C 0.05 2.59 4.77 85.24 0.41 2.99 16 18 N -0.80 -40.51 11.78 21.82 0.26 -40.25 16 19 Si 0.97 37.32 29.66 68.60 2.03 39.36 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 C -0.24 -12.87 9.74 22.48 0.22 -12.65 16 24 C -0.07 -3.61 8.59 22.13 0.19 -3.42 16 25 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.24 7.49 -2.39 -0.02 1.23 16 27 H 0.08 1.58 5.96 -2.39 -0.01 1.57 16 28 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.11 2.33 7.95 -2.39 -0.02 2.31 16 30 H 0.43 1.77 9.10 -74.06 -0.67 1.10 16 31 H 0.41 10.40 8.15 -92.71 -0.76 9.64 16 32 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.10 5.13 6.53 -2.91 -0.02 5.11 16 34 H 0.29 13.24 8.30 -92.70 -0.77 12.47 16 35 H 0.09 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.10 4.94 6.45 -2.91 -0.02 4.92 16 Total: -1.00 -68.31 311.31 3.50 -64.81 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.29 Total: 30.20 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 3.49 Total: -29.88 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -1.32 Total: -62.78 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.41 Total: -41.70 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.36 kcal Total: -68.31 3.50 -64.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827311920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.898 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds