Wall clock time and date at job start Mon Mar 30 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47178 * 59.99608 * 8 6 4 10 10 H 1.48496 * 109.47085 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46643 * 299.99548 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 C 1.50699 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.38394 * 119.92499 * 269.73074 * 16 15 13 18 18 C 1.38343 * 120.30180 * 179.72855 * 17 16 15 19 19 C 1.37973 * 120.15157 * 0.54127 * 18 17 16 20 20 C 1.39610 * 119.84279 * 359.73145 * 19 18 17 21 21 C 1.47724 * 120.14365 * 180.02562 * 20 19 18 22 22 O 1.21473 * 119.99748 * 179.97438 * 21 20 19 23 23 O 1.34707 * 120.00219 * 359.97438 * 21 20 19 24 24 C 1.37922 * 119.92386 * 89.99944 * 16 15 13 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 30 30 H 1.09000 * 109.47161 * 299.99737 * 15 13 12 31 31 H 1.09001 * 109.46740 * 59.99879 * 15 13 12 32 32 H 1.07999 * 119.84944 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.92549 * 180.25299 * 18 17 16 34 34 H 1.08003 * 120.07722 * 179.70840 * 19 18 17 35 35 H 0.96704 * 116.99960 * 179.97438 * 23 21 20 36 36 H 1.07998 * 120.07990 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8260 -2.5200 -4.0079 10 1 1.8260 -0.4203 -5.2204 11 1 3.8064 -1.1205 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 6 2.7003 0.2396 4.7412 17 6 3.8524 0.9681 4.9802 18 6 3.9061 1.8635 6.0335 19 6 2.8136 2.0276 6.8600 20 6 1.6501 1.2917 6.6279 21 6 0.4762 1.4627 7.5083 22 8 -0.5349 0.8213 7.3036 23 8 0.5271 2.3296 8.5380 24 6 1.6008 0.3939 5.5595 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7081 1.1610 -3.4844 29 1 2.2491 -1.6317 1.1525 30 1 1.9761 -1.5507 3.8325 31 1 3.6481 -1.1213 3.3985 32 1 4.7121 0.8400 4.3393 33 1 4.8070 2.4319 6.2121 34 1 2.8585 2.7235 7.6848 35 1 -0.2659 2.4074 9.0860 36 1 0.7037 -0.1781 5.3742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:55 Heat of formation + Delta-G solvation = -113.312653 kcal Electronic energy + Delta-G solvation = -20505.534463 eV Core-core repulsion = 17147.169422 eV Total energy + Delta-G solvation = -3358.365042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54527 -39.38565 -38.22649 -36.22396 -34.82445 -32.93672 -32.32613 -31.31315 -29.28893 -27.16578 -25.24811 -24.85900 -22.34950 -21.42241 -20.69300 -19.40910 -18.07331 -17.50906 -16.98097 -16.08246 -15.78663 -15.67575 -15.46530 -15.19194 -14.57012 -14.19098 -13.89011 -13.48035 -13.17091 -13.04400 -12.48023 -12.36098 -12.02827 -11.77437 -11.70160 -11.50959 -11.23718 -11.04781 -10.94584 -10.73837 -10.68293 -10.32642 -10.23350 -9.22582 -9.09669 -9.05923 -8.72330 -8.54822 -7.91221 -6.12409 -4.22203 0.63172 1.28001 2.45363 2.85362 3.24920 3.30304 3.31203 3.38553 3.64719 4.18891 4.41026 4.62076 4.75897 4.87003 5.03929 5.19193 5.21181 5.26037 5.55046 5.56154 5.59000 5.79757 5.92224 6.15491 6.26528 6.30803 6.47890 6.76348 6.83732 6.97965 7.15952 7.46245 7.55916 7.69205 7.73889 7.91579 8.15312 8.66083 8.77534 9.12669 9.45512 10.93429 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.003418 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.624488 B = 8190.623582 C = 8590.404259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.710 5.710 13 C 0.501 3.499 14 O -0.548 6.548 15 C -0.108 4.108 16 C -0.065 4.065 17 C -0.066 4.066 18 C -0.133 4.133 19 C -0.067 4.067 20 C -0.132 4.132 21 C 0.529 3.471 22 O -0.514 6.514 23 O -0.514 6.514 24 C -0.039 4.039 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.412 0.588 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -1.186 18.929 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.426 6.426 15 C -0.149 4.149 16 C -0.065 4.065 17 C -0.084 4.084 18 C -0.151 4.151 19 C -0.085 4.085 20 C -0.133 4.133 21 C 0.373 3.627 22 O -0.403 6.403 23 O -0.326 6.326 24 C -0.057 4.057 25 H 0.034 0.966 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.271 0.729 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.635 -0.415 18.479 19.056 hybrid contribution -0.193 -0.829 -0.604 1.044 sum 4.442 -1.244 17.875 18.461 Atomic orbital electron populations 1.22076 0.98497 0.99104 1.00910 1.18729 0.91015 0.93955 0.79994 0.93424 1.21186 1.32559 1.13252 0.90367 0.92116 1.24895 0.94807 0.94951 0.99065 1.69897 1.35730 1.22439 1.23997 0.86505 0.79136 0.79597 0.81825 1.20156 1.21131 1.20178 1.46526 1.65171 1.13537 1.10531 1.20256 0.79111 0.87618 0.84498 1.90685 1.50795 1.16134 1.85025 1.20782 1.04134 0.97846 0.92093 1.19302 0.93569 0.98214 0.95461 1.21341 0.97642 0.93610 0.95836 1.21096 0.98892 0.99326 0.95817 1.21384 0.91699 0.96777 0.98615 1.18923 0.93023 1.03169 0.98189 1.20953 0.87388 0.75789 0.78543 1.90896 1.32935 1.45555 1.70942 1.84553 1.46697 1.59915 1.41409 1.21091 0.98060 0.95115 0.91442 0.96646 0.89191 0.95480 0.92505 0.77896 0.88164 0.88051 0.85278 0.85121 0.84702 0.72912 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.73 2.56 -69.09 -0.18 6.56 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -14.41 5.07 -54.93 -0.28 -14.69 16 13 C 0.50 9.64 7.79 -10.98 -0.09 9.56 16 14 O -0.55 -13.00 15.70 5.56 0.09 -12.91 16 15 C -0.11 -1.44 5.83 -29.03 -0.17 -1.61 16 16 C -0.06 -0.89 4.37 -104.68 -0.46 -1.35 16 17 C -0.07 -0.80 9.69 -39.49 -0.38 -1.19 16 18 C -0.13 -1.42 10.03 -39.64 -0.40 -1.82 16 19 C -0.07 -0.74 9.62 -39.17 -0.38 -1.11 16 20 C -0.13 -1.74 5.87 -104.98 -0.62 -2.35 16 21 C 0.53 6.78 8.27 34.61 0.29 7.06 16 22 O -0.51 -8.08 17.13 -19.25 -0.33 -8.41 16 23 O -0.51 -4.65 12.68 -40.51 -0.51 -5.16 16 24 C -0.04 -0.55 9.24 -39.17 -0.36 -0.91 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.39 6.67 8.54 -40.82 -0.35 6.32 16 30 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.14 1.20 7.61 -52.48 -0.40 0.80 16 35 H 0.41 1.83 9.11 45.56 0.42 2.25 16 36 H 0.14 1.95 7.65 -52.49 -0.40 1.55 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -34.25 320.50 -6.90 -41.15 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.51 Total: 7.29 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.79 Total: -3.27 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.35 Total: -39.04 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.76 Total: -26.49 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.25 -6.90 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.159 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds