Wall clock time and date at job start Mon Mar 30 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47178 * 59.99608 * 8 6 4 10 10 H 1.48496 * 109.47085 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46643 * 299.99548 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 C 1.50699 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.38394 * 119.92499 * 269.73074 * 16 15 13 18 18 C 1.38343 * 120.30180 * 179.72855 * 17 16 15 19 19 C 1.37973 * 120.15157 * 0.54127 * 18 17 16 20 20 C 1.39610 * 119.84279 * 359.73145 * 19 18 17 21 21 C 1.47724 * 120.14365 * 180.02562 * 20 19 18 22 22 O 1.21473 * 119.99748 * 179.97438 * 21 20 19 23 23 O 1.34707 * 120.00219 * 359.97438 * 21 20 19 24 24 C 1.37922 * 119.92386 * 89.99944 * 16 15 13 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 30 30 H 1.09000 * 109.47161 * 299.99737 * 15 13 12 31 31 H 1.09001 * 109.46740 * 59.99879 * 15 13 12 32 32 H 1.07999 * 119.84944 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.92549 * 180.25299 * 18 17 16 34 34 H 1.08003 * 120.07722 * 179.70840 * 19 18 17 35 35 H 0.96704 * 116.99960 * 179.97438 * 23 21 20 36 36 H 1.07998 * 120.07990 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8260 -2.5200 -4.0079 10 1 1.8260 -0.4203 -5.2204 11 1 3.8064 -1.1205 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 6 2.7003 0.2396 4.7412 17 6 3.8524 0.9681 4.9802 18 6 3.9061 1.8635 6.0335 19 6 2.8136 2.0276 6.8600 20 6 1.6501 1.2917 6.6279 21 6 0.4762 1.4627 7.5083 22 8 -0.5349 0.8213 7.3036 23 8 0.5271 2.3296 8.5380 24 6 1.6008 0.3939 5.5595 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7081 1.1610 -3.4844 29 1 2.2491 -1.6317 1.1525 30 1 1.9761 -1.5507 3.8325 31 1 3.6481 -1.1213 3.3985 32 1 4.7121 0.8400 4.3393 33 1 4.8070 2.4319 6.2121 34 1 2.8585 2.7235 7.6848 35 1 -0.2659 2.4074 9.0860 36 1 0.7037 -0.1781 5.3742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:54 Heat of formation + Delta-G solvation = -137.493522 kcal Electronic energy + Delta-G solvation = -20506.583024 eV Core-core repulsion = 17147.169422 eV Total energy + Delta-G solvation = -3359.413603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51865 -40.70664 -39.43970 -37.13355 -36.69729 -34.34555 -33.92361 -32.23659 -31.06408 -28.42308 -27.32822 -25.79646 -23.67660 -22.61570 -21.95219 -21.07316 -19.11020 -18.86385 -18.24032 -17.46135 -17.09916 -16.95848 -16.69391 -16.53429 -15.97522 -15.59871 -15.11617 -14.78481 -14.43817 -14.36037 -14.01926 -13.74778 -13.43008 -13.11261 -12.96420 -12.79473 -12.74321 -12.63163 -12.53686 -12.26556 -12.17166 -12.06273 -11.70669 -11.11249 -10.78747 -10.57235 -10.03199 -9.77922 -9.71876 -8.16656 -6.34696 -0.31850 0.33851 1.45690 1.47902 1.49173 1.55763 1.87096 2.01636 2.36705 2.59161 2.94902 3.13738 3.61571 3.88656 4.01147 4.11280 4.22188 4.29781 4.35768 4.62555 4.69344 4.74760 4.86981 4.91111 5.00181 5.10306 5.24399 5.39072 5.44146 5.49514 5.54836 5.62551 5.69873 5.87630 5.92459 6.10529 6.73950 6.92323 7.00898 7.33731 7.61334 8.89431 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.003418 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.624488 B = 8190.623582 C = 8590.404259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.706 5.706 13 C 0.497 3.503 14 O -0.598 6.598 15 C -0.093 4.093 16 C -0.085 4.085 17 C -0.073 4.073 18 C -0.130 4.130 19 C -0.060 4.060 20 C -0.152 4.152 21 C 0.533 3.467 22 O -0.553 6.553 23 O -0.500 6.500 24 C -0.060 4.060 25 H 0.008 0.992 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.433 0.567 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -2.215 19.849 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.193 1.193 12 N -0.356 5.356 13 C 0.284 3.716 14 O -0.479 6.479 15 C -0.133 4.133 16 C -0.085 4.085 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.078 4.078 20 C -0.153 4.153 21 C 0.380 3.620 22 O -0.446 6.446 23 O -0.313 6.313 24 C -0.079 4.079 25 H 0.027 0.973 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.295 0.705 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.604 -1.472 19.453 20.596 hybrid contribution -0.788 -0.403 -0.778 1.178 sum 5.816 -1.875 18.675 19.649 Atomic orbital electron populations 1.21906 0.98729 0.99357 0.99321 1.18292 0.90813 0.91949 0.82221 0.98499 1.21547 1.32604 1.13624 0.90748 0.90562 1.25839 0.94876 0.95578 1.02461 1.70060 1.37017 1.24064 1.24637 0.85376 0.78735 0.78651 0.77443 1.18863 1.21386 1.19339 1.46272 1.65313 1.14319 1.09675 1.21286 0.77614 0.87151 0.85503 1.90659 1.52722 1.18678 1.85882 1.20751 1.06271 0.97659 0.88574 1.19427 0.94175 0.99252 0.95687 1.21681 0.97636 0.93349 0.96458 1.21519 0.99871 0.98649 0.94727 1.21711 0.90836 0.96156 0.99061 1.19126 0.94113 1.03746 0.98354 1.20975 0.86728 0.75502 0.78836 1.90878 1.34278 1.47294 1.72148 1.84497 1.48008 1.58334 1.40501 1.21133 0.97994 0.96061 0.92686 0.97304 0.91652 0.94094 0.92605 0.75764 0.85778 0.84471 0.83545 0.81772 0.82219 0.70481 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.97 9.26 71.98 0.67 -6.30 16 2 C 0.27 14.09 2.56 44.25 0.11 14.20 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 4 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.18 11.32 21.45 0.24 -52.93 16 8 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 9 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 12 N -0.71 -28.46 5.07 -446.11 -2.26 -30.73 16 13 C 0.50 19.06 7.79 87.66 0.68 19.74 16 14 O -0.60 -29.16 15.70 -3.01 -0.05 -29.21 16 15 C -0.09 -2.31 5.83 29.10 0.17 -2.14 16 16 C -0.08 -2.24 4.37 -19.90 -0.09 -2.32 16 17 C -0.07 -1.62 9.69 22.33 0.22 -1.40 16 18 C -0.13 -2.40 10.03 22.23 0.22 -2.18 16 19 C -0.06 -1.19 9.62 22.54 0.22 -0.97 16 20 C -0.15 -3.92 5.87 -20.10 -0.12 -4.03 16 21 C 0.53 13.47 8.27 70.33 0.58 14.05 16 22 O -0.55 -17.78 17.13 19.92 0.34 -17.44 16 23 O -0.50 -8.17 12.68 -56.17 -0.71 -8.88 16 24 C -0.06 -1.73 9.24 22.54 0.21 -1.52 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 3.71 6.07 -2.39 -0.01 3.70 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 29 H 0.41 13.31 8.54 -92.71 -0.79 12.52 16 30 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 31 H 0.14 2.41 8.08 -2.39 -0.02 2.39 16 32 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.16 2.31 7.61 -2.91 -0.02 2.29 16 35 H 0.43 3.06 9.11 -74.05 -0.67 2.39 16 36 H 0.12 3.67 7.65 -2.91 -0.02 3.64 16 Total: -1.00 -77.20 320.50 2.80 -74.40 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.34 Total: 21.35 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 3.55 Total: -0.30 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.02 Total: -83.66 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.42 Total: -55.53 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -77.20 2.80 -74.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.094 kcal (2) G-P(sol) polarization free energy of solvation -77.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds