Wall clock time and date at job start Mon Mar 30 2020 01:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47288 * 2 1 4 4 C 1.47197 * 109.47258 * 240.00271 * 2 1 3 5 5 N 2.60801 * 109.47273 * 240.00217 * 2 1 3 6 6 O 1.42905 * 109.47354 * 119.99753 * 2 1 3 7 7 C 1.42888 * 114.00312 * 270.00247 * 6 2 1 8 8 C 1.53003 * 109.47529 * 179.97438 * 7 6 2 9 9 O 1.42904 * 109.46794 * 64.99747 * 8 7 6 10 10 C 1.35901 * 116.99603 * 180.02562 * 9 8 7 11 11 C 1.38817 * 120.02510 * 359.72452 * 10 9 8 12 12 C 1.38189 * 120.08384 * 179.72389 * 11 10 9 13 13 C 1.38154 * 120.12033 * 0.55328 * 12 11 10 14 14 C 1.38898 * 120.04188 * 359.72630 * 13 12 11 15 15 O 1.35749 * 120.03787 * 179.97438 * 14 13 12 16 16 C 1.34830 * 116.99349 * 174.48488 * 15 14 13 17 17 H 1.07996 * 120.00709 * 5.05130 * 16 15 14 18 18 C 1.38663 * 119.99569 * 185.05922 * 16 15 14 19 19 N 1.31559 * 119.99929 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99859 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47496 * 59.99484 * 20 18 16 22 22 H 1.48497 * 109.46910 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.46846 * 299.99688 * 20 18 16 24 24 C 1.38569 * 120.01716 * 180.02562 * 10 9 8 25 25 H 1.08997 * 109.46944 * 299.99690 * 1 2 3 26 26 H 1.09003 * 109.46984 * 59.99759 * 1 2 3 27 27 H 1.09001 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47287 * 59.99939 * 7 6 2 29 29 H 1.08999 * 109.47287 * 299.99991 * 7 6 2 30 30 H 1.09007 * 109.46887 * 305.00655 * 8 7 6 31 31 H 1.08999 * 109.47593 * 185.00007 * 8 7 6 32 32 H 1.08010 * 119.95982 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.94289 * 180.25336 * 12 11 10 34 34 H 1.08000 * 119.97944 * 179.70234 * 13 12 11 35 35 H 0.97000 * 119.99692 * 180.02562 * 19 18 16 36 36 H 1.08007 * 120.06557 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3994 -1.2293 -2.1295 6 8 2.0064 -0.6736 1.1668 7 6 2.2001 0.1829 2.2940 8 6 2.7080 -0.6408 3.4792 9 8 4.0024 -1.1645 3.1754 10 6 4.5996 -1.9256 4.1299 11 6 3.9545 -2.1584 5.3369 12 6 4.5581 -2.9368 6.3061 13 6 5.8100 -3.4762 6.0816 14 6 6.4626 -3.2417 4.8781 15 8 7.6930 -3.7714 4.6579 16 6 8.2212 -3.6018 3.4290 17 1 7.7059 -2.9958 2.6986 18 6 9.4262 -4.2056 3.1031 19 7 10.0541 -4.9436 3.9930 20 14 10.1585 -3.9701 1.4008 21 1 10.4056 -2.5251 1.1637 22 1 11.4407 -4.7131 1.3065 23 1 9.2114 -4.4845 0.3790 24 6 5.8555 -2.4645 3.9014 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.2538 0.6546 2.5589 29 1 2.9319 0.9513 2.0450 30 1 2.0192 -1.4635 3.6716 31 1 2.7712 -0.0056 4.3627 32 1 2.9777 -1.7339 5.5171 33 1 4.0523 -3.1198 7.2426 34 1 6.2817 -4.0802 6.8426 35 1 10.8971 -5.3656 3.7650 36 1 6.3609 -2.2808 2.9648 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842109793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:25 Heat of formation + Delta-G solvation = -78.062719 kcal Electronic energy + Delta-G solvation = -20211.089081 eV Core-core repulsion = 16854.252591 eV Total energy + Delta-G solvation = -3356.836490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18285 -40.01754 -39.38127 -37.50476 -37.11324 -34.30360 -33.00969 -31.54422 -30.39369 -29.90467 -27.36030 -25.43233 -24.20412 -23.47890 -22.29415 -19.99723 -19.58440 -19.27592 -18.02691 -17.51533 -16.85709 -16.79657 -16.44999 -16.11073 -16.02892 -15.47462 -15.28704 -14.99413 -14.57767 -14.35825 -14.11691 -13.98216 -13.73372 -13.46283 -13.37519 -13.09313 -12.87587 -12.67173 -12.60197 -12.47474 -12.19449 -11.97771 -11.86898 -11.65234 -11.34525 -10.81110 -10.73125 -9.36310 -8.92285 -8.51418 -6.20134 0.60312 0.70782 1.30766 1.34932 1.41295 1.46463 1.64912 2.13910 2.32499 2.62407 2.79737 3.13613 3.18324 3.49813 3.92602 4.01579 4.09134 4.19985 4.27174 4.31807 4.45330 4.47407 4.54339 4.59527 4.74081 4.88376 4.93024 4.95148 5.03876 5.08507 5.34022 5.44541 5.63269 5.66572 5.96268 6.00625 6.09477 6.42332 6.63921 6.93386 7.71703 8.71192 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.004330 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.546305 B = 6464.763510 C = 8255.649456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.183 3.817 3 H 0.144 0.856 4 C 0.229 3.771 5 N -0.477 5.477 6 O -0.400 6.400 7 C 0.062 3.938 8 C 0.044 3.956 9 O -0.333 6.333 10 C 0.170 3.830 11 C -0.271 4.271 12 C -0.028 4.028 13 C -0.240 4.240 14 C 0.148 3.852 15 O -0.224 6.224 16 C -0.417 4.417 17 H 0.094 0.906 18 C -0.016 4.016 19 N -0.916 5.916 20 Si 1.013 2.987 21 H -0.257 1.257 22 H -0.264 1.264 23 H -0.264 1.264 24 C -0.290 4.290 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.118 0.882 35 H 0.275 0.725 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.278 15.280 -1.367 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.123 3.877 3 H 0.161 0.839 4 C -0.089 4.089 5 N -0.156 5.156 6 O -0.319 6.319 7 C -0.013 4.013 8 C -0.030 4.030 9 O -0.247 6.247 10 C 0.125 3.875 11 C -0.290 4.290 12 C -0.045 4.045 13 C -0.259 4.259 14 C 0.097 3.903 15 O -0.130 6.130 16 C -0.493 4.493 17 H 0.112 0.888 18 C -0.214 4.214 19 N -0.553 5.553 20 Si 0.832 3.168 21 H -0.182 1.182 22 H -0.188 1.188 23 H -0.189 1.189 24 C -0.311 4.311 25 H 0.127 0.873 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.268 14.101 -2.749 25.665 hybrid contribution 0.743 -0.074 -0.394 0.844 sum -20.524 14.026 -3.143 25.057 Atomic orbital electron populations 1.22271 0.90099 1.04024 1.05798 1.19716 0.95918 0.95175 0.76884 0.83880 1.29831 0.91753 0.92686 0.94622 1.81233 1.10019 1.09611 1.14707 1.88079 1.87110 1.36391 1.20307 1.23010 1.02532 0.91960 0.83824 1.23313 0.81639 0.99091 0.98996 1.86083 1.33982 1.63690 1.40934 1.18667 0.90685 0.89813 0.88380 1.21222 1.03730 1.09987 0.94065 1.20975 0.91836 0.92502 0.99226 1.20478 0.98481 1.10292 0.96673 1.19610 0.85136 0.91147 0.94402 1.83951 1.26700 1.68657 1.33691 1.21720 1.06092 1.33000 0.88519 0.88844 1.26496 0.95811 0.94961 1.04163 1.70156 1.16915 1.31617 1.36650 0.84735 0.77858 0.79468 0.74698 1.18175 1.18781 1.18906 1.20331 0.98068 1.10281 1.02374 0.87337 0.89211 0.92354 0.85377 0.90807 0.90497 0.87431 0.81895 0.81693 0.86388 0.91612 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.48 71.98 0.68 -0.23 16 2 C 0.18 2.14 3.17 28.79 0.09 2.23 16 3 H 0.14 0.59 7.79 -2.39 -0.02 0.57 16 4 C 0.23 5.06 15.03 89.44 1.34 6.40 16 5 N -0.48 -14.23 18.54 20.01 0.37 -13.86 16 6 O -0.40 -7.26 9.91 -144.34 -1.43 -8.70 16 7 C 0.06 0.71 6.13 71.98 0.44 1.15 16 8 C 0.04 0.79 5.12 71.98 0.37 1.15 16 9 O -0.33 -10.80 10.10 -87.79 -0.89 -11.69 16 10 C 0.17 6.47 6.68 22.49 0.15 6.62 16 11 C -0.27 -8.22 9.04 22.40 0.20 -8.01 16 12 C -0.03 -0.88 10.03 22.24 0.22 -0.66 16 13 C -0.24 -10.31 9.99 22.41 0.22 -10.09 16 14 C 0.15 7.75 6.65 22.56 0.15 7.90 16 15 O -0.22 -14.04 9.76 -22.73 -0.22 -14.26 16 16 C -0.42 -25.73 9.49 67.92 0.64 -25.09 16 17 H 0.09 5.49 5.20 -2.91 -0.02 5.48 16 18 C -0.02 -0.96 5.49 84.84 0.47 -0.49 16 19 N -0.92 -57.58 13.67 21.62 0.30 -57.28 16 20 Si 1.01 45.45 29.55 68.60 2.03 47.48 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 C -0.29 -14.06 9.10 22.48 0.20 -13.86 16 25 H 0.11 0.00 7.87 -2.39 -0.02 -0.02 16 26 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.13 0.17 7.87 -2.39 -0.02 0.15 16 29 H 0.07 0.76 8.08 -2.39 -0.02 0.75 16 30 H 0.08 1.29 7.67 -2.38 -0.02 1.28 16 31 H 0.11 1.31 7.65 -2.39 -0.02 1.30 16 32 H 0.16 3.29 6.29 -2.91 -0.02 3.27 16 33 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 35 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.11 5.67 5.64 -2.91 -0.02 5.65 16 Total: -1.00 -86.31 323.03 6.45 -79.86 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.10 Total: 11.41 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 5.19 Total: -32.97 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: 0.67 Total: -71.14 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -2.54 Total: -34.64 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -86.31 6.45 -79.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842109793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.800 kcal (2) G-P(sol) polarization free energy of solvation -86.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds