Wall clock time and date at job start Mon Mar 30 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47374 * 2 1 4 4 C 1.47200 * 109.47376 * 120.00435 * 2 1 3 5 5 N 2.60800 * 109.47338 * 120.00241 * 2 1 3 6 6 O 1.42904 * 109.47287 * 240.00186 * 2 1 3 7 7 C 1.42900 * 113.99733 * 89.99600 * 6 2 1 8 8 C 1.52998 * 109.46993 * 180.02562 * 7 6 2 9 9 O 1.42902 * 109.46933 * 65.00409 * 8 7 6 10 10 C 1.35901 * 117.00126 * 180.02562 * 9 8 7 11 11 C 1.38831 * 120.01811 * 359.72237 * 10 9 8 12 12 C 1.38192 * 120.07953 * 179.71940 * 11 10 9 13 13 C 1.38154 * 120.11996 * 0.55924 * 12 11 10 14 14 C 1.38895 * 120.04430 * 359.72156 * 13 12 11 15 15 O 1.35752 * 120.04166 * 179.97438 * 14 13 12 16 16 C 1.34828 * 116.99984 * 174.48413 * 15 14 13 17 17 H 1.08003 * 119.99912 * 5.05723 * 16 15 14 18 18 C 1.38651 * 119.99907 * 185.05913 * 16 15 14 19 19 N 1.31553 * 119.99984 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99753 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47214 * 89.99992 * 20 18 16 22 22 H 1.48502 * 109.46979 * 209.99829 * 20 18 16 23 23 H 1.48494 * 109.47450 * 329.99705 * 20 18 16 24 24 C 1.38566 * 120.02418 * 180.02562 * 10 9 8 25 25 H 1.09000 * 109.47039 * 59.99975 * 1 2 3 26 26 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46959 * 299.99574 * 1 2 3 28 28 H 1.09002 * 109.47644 * 300.00249 * 7 6 2 29 29 H 1.09001 * 109.46998 * 60.00831 * 7 6 2 30 30 H 1.09000 * 109.47572 * 185.00463 * 8 7 6 31 31 H 1.08997 * 109.47381 * 305.00621 * 8 7 6 32 32 H 1.08000 * 119.95824 * 0.02562 * 11 10 9 33 33 H 1.07998 * 119.93966 * 180.25620 * 12 11 10 34 34 H 1.08001 * 119.97405 * 179.69612 * 13 12 11 35 35 H 0.97005 * 120.00321 * 180.02562 * 19 18 16 36 36 H 1.08003 * 120.05974 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0208 -0.6940 1.2018 5 7 2.3995 -1.2295 2.1293 6 8 2.0064 -0.6736 -1.1668 7 6 2.2001 0.1830 -2.2941 8 6 2.7079 -0.6406 -3.4792 9 8 1.6995 -1.5705 -3.8799 10 6 1.9927 -2.3852 -4.9274 11 6 3.2245 -2.2869 -5.5602 12 6 3.5262 -3.1187 -6.6218 13 6 2.5990 -4.0425 -7.0639 14 6 1.3628 -4.1412 -6.4383 15 8 0.4516 -5.0486 -6.8732 16 6 -0.6813 -5.1721 -6.1525 17 1 -0.8677 -4.5079 -5.3215 18 6 -1.6068 -6.1516 -6.4783 19 7 -1.3799 -6.9603 -7.4909 20 14 -3.1766 -6.3222 -5.4803 21 1 -4.2375 -5.4716 -6.0772 22 1 -3.6165 -7.7405 -5.4882 23 1 -2.9239 -5.8902 -4.0823 24 6 1.0601 -3.3102 -5.3685 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2538 0.6548 -2.5588 29 1 2.9320 0.9514 -2.0450 30 1 2.9401 0.0244 -4.3110 31 1 3.6066 -1.1832 -3.1861 32 1 3.9497 -1.5629 -5.2193 33 1 4.4867 -3.0431 -7.1097 34 1 2.8354 -4.6880 -7.8969 35 1 -2.0276 -7.6454 -7.7191 36 1 0.0996 -3.3851 -4.8803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842109794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:27 Heat of formation + Delta-G solvation = -77.177073 kcal Electronic energy + Delta-G solvation = -20232.754321 eV Core-core repulsion = 16875.956236 eV Total energy + Delta-G solvation = -3356.798085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16647 -40.00821 -39.37231 -37.49367 -37.09736 -34.27519 -33.02191 -31.54556 -30.38348 -29.88694 -27.33494 -25.46288 -24.20807 -23.46506 -22.27042 -19.97177 -19.53108 -19.30256 -18.04757 -17.52060 -16.78714 -16.73267 -16.38137 -16.21511 -15.98656 -15.44897 -15.36223 -14.80451 -14.63337 -14.41435 -14.12306 -14.03240 -13.73257 -13.50965 -13.21505 -12.97420 -12.91145 -12.63694 -12.60558 -12.54205 -12.16673 -12.06981 -11.84348 -11.61803 -11.31647 -10.78524 -10.72135 -9.34277 -8.91029 -8.48355 -6.17240 0.61799 0.71984 1.34547 1.34910 1.43909 1.52240 1.64182 2.17108 2.32682 2.60063 2.82266 3.15730 3.19275 3.51685 3.93085 4.01208 4.09411 4.19750 4.25365 4.31466 4.46495 4.46931 4.55310 4.59532 4.73007 4.85026 4.87993 4.96846 5.05409 5.11787 5.31497 5.45721 5.64563 5.68126 5.97221 6.03041 6.09421 6.41548 6.64404 6.96465 7.74647 8.74505 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.004214 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.605019 B = 6642.148582 C = 8185.665641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.187 3.813 3 H 0.156 0.844 4 C 0.233 3.767 5 N -0.472 5.472 6 O -0.400 6.400 7 C 0.062 3.938 8 C 0.045 3.955 9 O -0.327 6.327 10 C 0.171 3.829 11 C -0.274 4.274 12 C -0.029 4.029 13 C -0.241 4.241 14 C 0.148 3.852 15 O -0.225 6.225 16 C -0.416 4.416 17 H 0.098 0.902 18 C -0.019 4.019 19 N -0.918 5.918 20 Si 1.016 2.984 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.287 4.287 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.274 0.726 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 20.453 10.513 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.127 3.873 3 H 0.173 0.827 4 C -0.085 4.085 5 N -0.151 5.151 6 O -0.319 6.319 7 C -0.013 4.013 8 C -0.029 4.029 9 O -0.241 6.241 10 C 0.125 3.875 11 C -0.293 4.293 12 C -0.047 4.047 13 C -0.260 4.260 14 C 0.097 3.903 15 O -0.131 6.131 16 C -0.492 4.492 17 H 0.115 0.885 18 C -0.216 4.216 19 N -0.556 5.556 20 Si 0.835 3.165 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.182 1.182 24 C -0.307 4.307 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.089 0.911 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.060 19.155 11.696 23.528 hybrid contribution -0.849 -0.387 -0.196 0.954 sum 6.211 18.768 11.500 22.871 Atomic orbital electron populations 1.22286 0.91804 1.03471 1.05363 1.19618 0.94996 0.95646 0.77041 0.82719 1.29614 0.91773 0.92649 0.94445 1.81225 1.10239 1.09357 1.14230 1.88088 1.86926 1.36739 1.20152 1.23000 1.03410 0.92006 0.82924 1.23266 0.90848 0.91521 0.97314 1.86077 1.43797 1.48165 1.46071 1.18661 0.93085 0.89117 0.86630 1.21212 0.97286 1.07881 1.02912 1.20949 0.98253 0.91302 0.94180 1.20463 0.92888 1.06748 1.05913 1.19593 0.90077 0.88593 0.91995 1.83957 1.27095 1.52247 1.49777 1.21798 0.95030 1.18495 1.13875 0.88514 1.26548 1.02877 0.94081 0.98140 1.70171 1.37607 1.19335 1.28445 0.84627 0.75377 0.78507 0.77966 1.18365 1.19291 1.18185 1.20321 1.02242 1.03716 1.04393 0.88564 0.93314 0.88791 0.89957 0.86055 0.87482 0.91107 0.82229 0.81956 0.86501 0.91698 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.48 71.98 0.68 -1.11 16 2 C 0.19 2.14 3.17 28.79 0.09 2.23 16 3 H 0.16 0.23 7.79 -2.39 -0.02 0.21 16 4 C 0.23 4.58 15.03 89.44 1.34 5.92 16 5 N -0.47 -12.50 18.54 20.01 0.37 -12.13 16 6 O -0.40 -7.23 9.91 -144.34 -1.43 -8.67 16 7 C 0.06 0.70 6.13 71.98 0.44 1.14 16 8 C 0.04 0.81 5.12 71.98 0.37 1.18 16 9 O -0.33 -10.25 10.10 -87.80 -0.89 -11.13 16 10 C 0.17 6.36 6.68 22.49 0.15 6.51 16 11 C -0.27 -8.33 9.04 22.40 0.20 -8.13 16 12 C -0.03 -0.93 10.03 22.24 0.22 -0.71 16 13 C -0.24 -10.30 9.99 22.41 0.22 -10.07 16 14 C 0.15 7.65 6.65 22.56 0.15 7.80 16 15 O -0.22 -13.87 9.76 -22.74 -0.22 -14.10 16 16 C -0.42 -25.08 9.49 67.92 0.64 -24.43 16 17 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 18 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 19 N -0.92 -57.00 13.67 21.61 0.30 -56.71 16 20 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 24 C -0.29 -13.51 9.10 22.48 0.20 -13.30 16 25 H 0.10 0.75 7.87 -2.39 -0.02 0.73 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.74 7.87 -2.39 -0.02 0.72 16 29 H 0.12 0.29 8.09 -2.39 -0.02 0.27 16 30 H 0.11 1.33 7.65 -2.39 -0.02 1.31 16 31 H 0.07 1.27 7.67 -2.39 -0.02 1.25 16 32 H 0.16 3.33 6.29 -2.91 -0.02 3.31 16 33 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.27 15.52 8.31 -92.70 -0.77 14.74 16 36 H 0.11 5.68 5.64 -2.91 -0.02 5.66 16 Total: -1.00 -83.20 323.03 6.45 -76.75 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.10 Total: 13.49 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 5.19 Total: -33.59 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: 0.67 Total: -68.83 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -2.54 Total: -33.90 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -83.20 6.45 -76.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842109794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.426 kcal (2) G-P(sol) polarization free energy of solvation -83.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds