Wall clock time and date at job start Mon Mar 30 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35438 * 116.99874 * 2 1 4 4 C 1.39022 * 119.97679 * 0.02562 * 3 2 1 5 5 C 1.37524 * 120.26568 * 179.97438 * 4 3 2 6 6 C 1.40255 * 120.22078 * 0.02664 * 5 4 3 7 7 C 1.46905 * 120.02488 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99771 * 180.02562 * 7 6 5 9 9 C 1.39599 * 119.94436 * 359.70159 * 6 5 4 10 10 C 1.39190 * 119.73881 * 0.54878 * 9 6 5 11 11 C 1.47580 * 120.10951 * 179.74814 * 10 9 6 12 12 O 1.21587 * 120.00363 * 131.13249 * 11 10 9 13 13 N 1.34780 * 120.00086 * 311.40112 * 11 10 9 14 14 C 1.46499 * 119.99554 * 4.62149 * 13 11 10 15 15 C 1.46498 * 120.00002 * 184.61229 * 13 11 10 16 16 C 1.50702 * 109.47025 * 90.00680 * 15 13 11 17 17 H 1.08004 * 119.99455 * 359.97438 * 16 15 13 18 18 C 1.37871 * 120.00105 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46745 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46797 * 119.99793 * 20 18 16 23 23 H 1.48496 * 109.46941 * 240.00216 * 20 18 16 24 24 H 1.08993 * 109.46833 * 299.99584 * 1 2 3 25 25 H 1.08998 * 109.46895 * 59.99866 * 1 2 3 26 26 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.86685 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.89088 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.00545 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.13425 * 180.31456 * 9 6 5 31 31 H 1.09001 * 109.47589 * 84.90648 * 14 13 11 32 32 H 1.09000 * 109.46732 * 204.90039 * 14 13 11 33 33 H 1.09000 * 109.47493 * 324.89821 * 14 13 11 34 34 H 1.09001 * 109.46988 * 209.99944 * 15 13 11 35 35 H 1.08997 * 109.47449 * 330.00633 * 15 13 11 36 36 H 0.97006 * 120.00119 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 6 1.2862 2.3724 0.0005 5 6 1.9044 3.6009 0.0011 6 6 3.3043 3.6868 0.0005 7 6 3.9601 5.0013 0.0005 8 8 5.1707 5.0750 -0.0004 9 6 4.0739 2.5221 0.0057 10 6 3.4462 1.2797 -0.0001 11 6 4.2518 0.0432 -0.0003 12 8 4.0003 -0.8464 0.7893 13 7 5.2699 -0.0976 -0.8722 14 6 5.6415 1.0147 -1.7502 15 6 6.0050 -1.3629 -0.9418 16 6 5.3486 -2.2704 -1.9501 17 1 4.4713 -1.9380 -2.4852 18 6 5.8679 -3.5250 -2.1894 19 7 6.9359 -3.9299 -1.5374 20 14 5.0538 -4.6502 -3.4387 21 1 3.8772 -3.9638 -4.0302 22 1 6.0244 -4.9817 -4.5126 23 1 4.6130 -5.8990 -2.7669 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2079 2.3129 0.0014 28 1 1.3098 4.5026 0.0019 29 1 3.3643 5.9021 0.0005 30 1 5.1521 2.5847 0.0104 31 1 6.3220 1.6827 -1.2223 32 1 6.1335 0.6252 -2.6415 33 1 4.7456 1.5636 -2.0403 34 1 7.0343 -1.1690 -1.2435 35 1 5.9974 -1.8419 0.0373 36 1 7.3015 -4.8125 -1.7060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864995747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:09 Heat of formation + Delta-G solvation = -69.074710 kcal Electronic energy + Delta-G solvation = -21364.862775 eV Core-core repulsion = 18008.416035 eV Total energy + Delta-G solvation = -3356.446740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63892 -39.07477 -38.54554 -36.90554 -34.75350 -32.70199 -31.48928 -30.63959 -27.95386 -27.42598 -25.95553 -24.31080 -23.97805 -22.35387 -20.96002 -19.15270 -17.93321 -17.08488 -16.57574 -16.44464 -15.92338 -15.61915 -15.18013 -15.11909 -14.57703 -14.32203 -14.29788 -14.06652 -13.49635 -13.08053 -12.76233 -12.59520 -12.34958 -12.09216 -11.92263 -11.67633 -11.21204 -11.18677 -11.10587 -10.84243 -10.56438 -10.13647 -9.96374 -9.59242 -9.19334 -8.90963 -8.40971 -8.33827 -7.59561 -6.00899 -4.05379 0.58166 1.03330 2.28835 3.15279 3.31716 3.33868 3.39064 3.43622 3.71229 3.98583 4.19948 4.45746 4.51106 4.66928 4.88350 5.04504 5.05234 5.08269 5.21494 5.33571 5.39458 5.42969 5.66664 5.76865 5.92868 5.96623 6.00415 6.13838 6.27333 6.48464 7.07405 7.26445 7.32013 7.48751 7.57865 7.95876 8.26984 8.42556 8.93054 9.10844 9.59365 11.07262 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.005418 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.711573 B = 5166.331896 C = 6147.536997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.283 6.283 3 C 0.208 3.792 4 C -0.234 4.234 5 C -0.015 4.015 6 C -0.246 4.246 7 C 0.387 3.613 8 O -0.465 6.465 9 C 0.008 3.992 10 C -0.164 4.164 11 C 0.555 3.445 12 O -0.525 6.525 13 N -0.595 5.595 14 C 0.081 3.919 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.147 0.853 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 17.255 1.303 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.194 6.194 3 C 0.159 3.841 4 C -0.253 4.253 5 C -0.034 4.034 6 C -0.248 4.248 7 C 0.247 3.753 8 O -0.339 6.339 9 C -0.011 4.011 10 C -0.168 4.168 11 C 0.340 3.660 12 O -0.402 6.402 13 N -0.327 5.327 14 C -0.063 4.063 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.230 16.420 1.728 20.547 hybrid contribution -0.873 -0.593 -0.805 1.327 sum -13.103 15.827 0.923 20.568 Atomic orbital electron populations 1.23202 0.78158 1.04696 1.01173 1.86295 1.21399 1.25875 1.85787 1.19349 0.91046 0.84854 0.88872 1.21135 1.00380 0.91826 1.11921 1.21170 0.93142 0.97347 0.91738 1.20698 0.94384 0.96068 1.13602 1.23837 0.89649 0.91600 0.70257 1.90549 1.17821 1.90150 1.35394 1.21585 1.00939 0.89477 0.89068 1.19600 0.91167 0.95373 1.10628 1.17774 0.80709 0.85568 0.81922 1.90765 1.68505 1.41823 1.39081 1.48066 1.32744 1.15887 1.36007 1.21798 0.99703 0.89684 0.95158 1.19349 0.90880 0.78459 0.98763 1.21477 1.12822 0.99739 1.22292 0.92402 1.24931 0.95033 0.97688 0.96459 1.69947 1.22116 1.19678 1.41645 0.86441 0.79327 0.80677 0.80965 1.19844 1.20965 1.20867 0.92349 0.92407 0.87722 0.84404 0.84633 0.88169 0.83541 0.93470 0.90478 0.92562 0.94744 0.93564 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.80 101.05 0.99 1.23 16 2 O -0.28 -4.78 9.50 -28.04 -0.27 -5.05 16 3 C 0.21 3.24 6.69 -38.47 -0.26 2.98 16 4 C -0.23 -2.51 9.00 -39.55 -0.36 -2.86 16 5 C -0.02 -0.14 9.77 -39.08 -0.38 -0.52 16 6 C -0.25 -2.75 5.86 -105.12 -0.62 -3.37 16 7 C 0.39 3.74 11.44 34.24 0.39 4.13 16 8 O -0.47 -6.45 17.15 5.55 0.10 -6.35 16 9 C 0.01 0.12 7.30 -38.72 -0.28 -0.16 16 10 C -0.16 -2.91 4.92 -104.91 -0.52 -3.42 16 11 C 0.55 12.72 6.95 -12.45 -0.09 12.64 16 12 O -0.52 -14.24 16.06 -4.75 -0.08 -14.32 16 13 N -0.60 -13.61 2.86 -184.18 -0.53 -14.14 16 14 C 0.08 1.42 9.05 59.85 0.54 1.97 16 15 C 0.24 6.67 5.18 -5.19 -0.03 6.64 16 16 C -0.52 -15.32 9.39 -34.44 -0.32 -15.64 16 17 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 20 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 25 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.14 1.05 6.27 -52.49 -0.33 0.72 16 28 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 29 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 30 H 0.15 2.20 5.83 -52.48 -0.31 1.90 16 31 H 0.05 0.73 7.05 -51.93 -0.37 0.36 16 32 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 33 H 0.06 0.89 6.26 -51.93 -0.32 0.56 16 34 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.41 7.36 -51.93 -0.38 1.03 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -37.30 315.05 -5.48 -42.79 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -4.15 Total: -3.81 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.02 Total: 5.28 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.21 Total: -40.48 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.25 Total: -25.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.30 -5.48 -42.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864995747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.289 kcal (2) G-P(sol) polarization free energy of solvation -37.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds