Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35438 * 116.99874 * 2 1 4 4 C 1.39022 * 119.97679 * 0.02562 * 3 2 1 5 5 C 1.37524 * 120.26568 * 179.97438 * 4 3 2 6 6 C 1.40255 * 120.22078 * 0.02664 * 5 4 3 7 7 C 1.46905 * 120.02488 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99771 * 180.02562 * 7 6 5 9 9 C 1.39599 * 119.94436 * 359.70159 * 6 5 4 10 10 C 1.39190 * 119.73881 * 0.54878 * 9 6 5 11 11 C 1.47580 * 120.10951 * 179.74814 * 10 9 6 12 12 O 1.21587 * 120.00363 * 131.13249 * 11 10 9 13 13 N 1.34780 * 120.00086 * 311.40112 * 11 10 9 14 14 C 1.46499 * 119.99554 * 4.62149 * 13 11 10 15 15 C 1.46498 * 120.00002 * 184.61229 * 13 11 10 16 16 C 1.50702 * 109.47025 * 90.00680 * 15 13 11 17 17 H 1.08004 * 119.99455 * 359.97438 * 16 15 13 18 18 C 1.37871 * 120.00105 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46745 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46797 * 119.99793 * 20 18 16 23 23 H 1.48496 * 109.46941 * 240.00216 * 20 18 16 24 24 H 1.08993 * 109.46833 * 299.99584 * 1 2 3 25 25 H 1.08998 * 109.46895 * 59.99866 * 1 2 3 26 26 H 1.09003 * 109.46777 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.86685 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.89088 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.00545 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.13425 * 180.31456 * 9 6 5 31 31 H 1.09001 * 109.47589 * 84.90648 * 14 13 11 32 32 H 1.09000 * 109.46732 * 204.90039 * 14 13 11 33 33 H 1.09000 * 109.47493 * 324.89821 * 14 13 11 34 34 H 1.09001 * 109.46988 * 209.99944 * 15 13 11 35 35 H 1.08997 * 109.47449 * 330.00633 * 15 13 11 36 36 H 0.97006 * 120.00119 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 6 1.2862 2.3724 0.0005 5 6 1.9044 3.6009 0.0011 6 6 3.3043 3.6868 0.0005 7 6 3.9601 5.0013 0.0005 8 8 5.1707 5.0750 -0.0004 9 6 4.0739 2.5221 0.0057 10 6 3.4462 1.2797 -0.0001 11 6 4.2518 0.0432 -0.0003 12 8 4.0003 -0.8464 0.7893 13 7 5.2699 -0.0976 -0.8722 14 6 5.6415 1.0147 -1.7502 15 6 6.0050 -1.3629 -0.9418 16 6 5.3486 -2.2704 -1.9501 17 1 4.4713 -1.9380 -2.4852 18 6 5.8679 -3.5250 -2.1894 19 7 6.9359 -3.9299 -1.5374 20 14 5.0538 -4.6502 -3.4387 21 1 3.8772 -3.9638 -4.0302 22 1 6.0244 -4.9817 -4.5126 23 1 4.6130 -5.8990 -2.7669 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2079 2.3129 0.0014 28 1 1.3098 4.5026 0.0019 29 1 3.3643 5.9021 0.0005 30 1 5.1521 2.5847 0.0104 31 1 6.3220 1.6827 -1.2223 32 1 6.1335 0.6252 -2.6415 33 1 4.7456 1.5636 -2.0403 34 1 7.0343 -1.1690 -1.2435 35 1 5.9974 -1.8419 0.0373 36 1 7.3015 -4.8125 -1.7060 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864995747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = -96.423630 kcal Electronic energy + Delta-G solvation = -21366.048713 eV Core-core repulsion = 18008.416035 eV Total energy + Delta-G solvation = -3357.632679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77348 -40.14092 -39.96428 -37.93912 -36.65853 -34.81863 -32.72210 -31.57877 -29.77521 -28.44968 -27.60467 -25.72738 -25.16801 -23.84763 -21.99761 -20.53681 -19.04134 -18.72477 -18.31222 -17.70953 -17.29149 -16.77020 -16.67945 -16.10505 -16.07130 -15.91003 -15.43235 -15.18259 -14.62541 -14.53544 -14.18715 -13.88566 -13.73255 -13.56754 -13.46071 -13.16819 -12.89919 -12.77469 -12.58775 -12.26323 -12.15027 -12.01534 -11.74208 -10.93107 -10.68817 -10.60997 -10.10893 -9.54746 -9.33430 -8.26087 -6.41818 -0.30996 0.01877 1.33315 1.36267 1.42289 1.48696 1.85055 2.22796 2.28363 2.39950 2.76859 3.02900 3.37690 3.56364 3.73863 3.96697 4.12999 4.26307 4.30573 4.33464 4.37606 4.50356 4.54800 4.68018 4.74963 4.81954 4.94199 5.05943 5.12583 5.16748 5.22906 5.49567 5.60569 5.76941 6.00592 6.31842 6.61256 6.62652 6.67900 7.21188 7.37068 8.81817 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.005418 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.711573 B = 5166.331896 C = 6147.536997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.336 6.336 3 C 0.188 3.812 4 C -0.222 4.222 5 C 0.018 3.982 6 C -0.247 4.247 7 C 0.399 3.601 8 O -0.514 6.514 9 C -0.002 4.002 10 C -0.203 4.203 11 C 0.547 3.453 12 O -0.587 6.587 13 N -0.605 5.605 14 C 0.083 3.917 15 C 0.258 3.742 16 C -0.544 4.544 17 H 0.050 0.950 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.973 3.027 21 H -0.268 1.268 22 H -0.265 1.265 23 H -0.278 1.278 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.178 0.822 28 H 0.201 0.799 29 H 0.171 0.829 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.027 0.973 35 H -0.001 1.001 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 20.600 -0.014 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.247 6.247 3 C 0.139 3.861 4 C -0.240 4.240 5 C 0.000 4.000 6 C -0.248 4.248 7 C 0.261 3.739 8 O -0.390 6.390 9 C -0.021 4.021 10 C -0.207 4.207 11 C 0.336 3.664 12 O -0.469 6.469 13 N -0.336 5.336 14 C -0.059 4.059 15 C 0.137 3.863 16 C -0.582 4.582 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.190 1.190 23 H -0.204 1.204 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.195 0.805 28 H 0.218 0.782 29 H 0.186 0.814 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.017 0.983 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.425 19.819 0.388 25.117 hybrid contribution 0.064 -1.535 -0.333 1.572 sum -15.361 18.284 0.055 23.880 Atomic orbital electron populations 1.23529 0.75329 1.05631 1.03598 1.86220 1.24641 1.27636 1.86248 1.19665 0.90441 0.86224 0.89762 1.21589 1.01981 0.90434 1.10011 1.21849 0.92173 0.98862 0.87071 1.21142 0.95661 0.95654 1.12361 1.24695 0.89122 0.92340 0.67729 1.90564 1.20317 1.90506 1.37604 1.21508 1.00637 0.89927 0.90026 1.19240 0.92038 0.93521 1.15900 1.18713 0.80295 0.86993 0.80411 1.90692 1.70042 1.44770 1.41352 1.48087 1.32791 1.15581 1.37106 1.21968 1.01139 0.88438 0.94360 1.18836 0.91117 0.80496 0.95818 1.21663 1.12865 1.00870 1.22849 0.93192 1.25909 0.95529 0.99175 0.98530 1.70067 1.23340 1.20406 1.42954 0.85292 0.78606 0.78048 0.78385 1.19223 1.19035 1.20401 0.89845 0.89776 0.87854 0.80474 0.78222 0.81351 0.85200 0.91409 0.90772 0.90324 0.95531 0.98279 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.80 113.37 1.11 1.35 16 2 O -0.34 -11.57 9.50 -77.75 -0.74 -12.31 16 3 C 0.19 5.72 6.69 22.99 0.15 5.88 16 4 C -0.22 -3.75 9.00 22.29 0.20 -3.55 16 5 C 0.02 0.21 9.77 22.59 0.22 0.43 16 6 C -0.25 -4.57 5.86 -20.19 -0.12 -4.69 16 7 C 0.40 5.82 11.44 70.09 0.80 6.62 16 8 O -0.51 -13.08 17.15 -3.05 -0.05 -13.13 16 9 C 0.00 -0.06 7.30 22.83 0.17 0.11 16 10 C -0.20 -7.45 4.92 -20.05 -0.10 -7.55 16 11 C 0.55 27.11 6.95 86.71 0.60 27.71 16 12 O -0.59 -34.95 16.06 5.61 0.09 -34.86 16 13 N -0.60 -29.76 2.86 -854.87 -2.44 -32.20 16 14 C 0.08 3.07 9.05 127.77 1.16 4.23 16 15 C 0.26 15.26 5.18 85.63 0.44 15.70 16 16 C -0.54 -33.48 9.39 25.60 0.24 -33.24 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -58.32 13.29 21.44 0.28 -58.04 16 20 Si 0.97 46.55 29.54 68.60 2.03 48.58 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H 0.08 1.13 7.65 -2.39 -0.02 1.11 16 25 H 0.08 1.12 7.65 -2.39 -0.02 1.10 16 26 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.18 1.57 6.27 -2.91 -0.02 1.55 16 28 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 29 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 30 H 0.13 4.06 5.83 -2.91 -0.02 4.04 16 31 H 0.07 2.19 7.05 -2.39 -0.02 2.18 16 32 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 33 H 0.08 2.53 6.26 -2.39 -0.01 2.52 16 34 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 35 H 0.00 -0.06 7.36 -2.39 -0.02 -0.08 16 36 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -92.30 315.05 5.61 -86.68 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.10 Total: 1.37 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.34 Total: 13.91 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -2.16 Total: -90.24 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -0.70 Total: -60.31 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -92.30 5.61 -86.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864995747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.739 kcal (2) G-P(sol) polarization free energy of solvation -92.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds