Wall clock time and date at job start Mon Mar 30 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35440 * 116.99690 * 2 1 4 4 C 1.39021 * 119.98113 * 359.72851 * 3 2 1 5 5 C 1.37523 * 120.27034 * 179.75773 * 4 3 2 6 6 C 1.40251 * 120.21426 * 0.52038 * 5 4 3 7 7 C 1.46907 * 120.02823 * 179.76387 * 6 5 4 8 8 O 1.21294 * 119.99720 * 359.97013 * 7 6 5 9 9 C 1.39604 * 119.94914 * 359.73253 * 6 5 4 10 10 C 1.39184 * 119.73893 * 0.02562 * 9 6 5 11 11 C 1.47583 * 120.11068 * 179.97438 * 10 9 6 12 12 O 1.21583 * 119.99864 * 180.02562 * 11 10 9 13 13 N 1.34771 * 120.00255 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00313 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47474 * 34.99890 * 14 13 11 16 16 C 1.53003 * 109.47041 * 274.99929 * 14 13 11 17 17 C 1.50703 * 109.47345 * 155.00307 * 14 13 11 18 18 H 1.07996 * 119.99863 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00309 * 180.02562 * 17 14 13 20 20 N 1.31522 * 119.99795 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00154 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47318 * 59.99929 * 21 19 17 23 23 H 1.48504 * 109.47075 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47102 * 299.99587 * 21 19 17 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99597 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99652 * 1 2 3 28 28 H 1.08008 * 119.86401 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.88939 * 180.22989 * 5 4 3 30 30 H 1.07992 * 120.00487 * 179.97438 * 7 6 5 31 31 H 1.08008 * 120.13222 * 180.02562 * 9 6 5 32 32 H 0.97003 * 119.99498 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.47021 * 179.97438 * 16 14 13 34 34 H 1.09004 * 109.47351 * 299.99920 * 16 14 13 35 35 H 1.08999 * 109.46978 * 60.00338 * 16 14 13 36 36 H 0.96994 * 119.99776 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 6 1.2863 2.3724 -0.0057 5 6 1.9043 3.6010 -0.0007 6 6 3.3042 3.6868 -0.0008 7 6 3.9602 5.0013 -0.0007 8 8 3.2910 6.0129 -0.0011 9 6 4.0739 2.5221 -0.0004 10 6 3.4462 1.2798 -0.0004 11 6 4.2519 0.0432 -0.0005 12 8 3.7015 -1.0409 -0.0009 13 7 5.5976 0.1157 -0.0001 14 6 6.3973 -1.1117 0.0004 15 1 5.8906 -1.8758 -0.5890 16 6 6.5700 -1.6074 1.4376 17 6 7.7507 -0.8298 -0.5996 18 1 7.9909 0.1642 -0.9470 19 6 8.6819 -1.8410 -0.7061 20 7 8.3891 -3.0516 -0.2835 21 14 10.3591 -1.4917 -1.4505 22 1 11.0500 -0.4510 -0.6476 23 1 11.1693 -2.7362 -1.4510 24 1 10.1911 -1.0105 -2.8453 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2078 2.3129 -0.0105 29 1 1.3098 4.5025 -0.0014 30 1 5.0381 5.0669 -0.0004 31 1 5.1521 2.5847 -0.0001 32 1 6.0367 0.9807 -0.0001 33 1 7.1646 -2.5209 1.4379 34 1 7.0768 -0.8433 2.0271 35 1 5.5911 -1.8113 1.8716 36 1 9.0441 -3.7631 -0.3588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865054889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:38 Heat of formation + Delta-G solvation = -80.707274 kcal Electronic energy + Delta-G solvation = -20966.504895 eV Core-core repulsion = 17609.553728 eV Total energy + Delta-G solvation = -3356.951166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61714 -39.10209 -38.48895 -36.93349 -34.75526 -32.55747 -31.45437 -30.79952 -28.76989 -27.46990 -25.25652 -24.56843 -23.59946 -21.91131 -20.52081 -19.40783 -18.52321 -17.37458 -16.81178 -16.22434 -15.89541 -15.39557 -15.16471 -15.05283 -14.73056 -14.38536 -14.19725 -13.94868 -13.42703 -13.07013 -12.83254 -12.53364 -12.37442 -12.07411 -11.67601 -11.29775 -11.19634 -11.09267 -10.95471 -10.72943 -10.32385 -10.22845 -9.96515 -9.24479 -9.06422 -9.02691 -8.54560 -8.39665 -7.87565 -6.11874 -4.21422 0.55235 0.91736 2.23981 3.12928 3.25768 3.30917 3.31511 3.32508 3.96239 4.09001 4.13730 4.35743 4.51591 4.64591 4.88154 5.01579 5.05907 5.09398 5.20448 5.29300 5.38719 5.45083 5.69633 5.86003 6.03076 6.11159 6.41690 6.84086 6.98344 7.15843 7.22795 7.29077 7.46214 7.57196 7.69879 7.92429 8.15490 8.65462 8.78573 9.12699 9.46137 10.94085 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.004788 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.171643 B = 5846.259501 C = 7147.029019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.269 6.269 3 C 0.214 3.786 4 C -0.238 4.238 5 C -0.002 4.002 6 C -0.246 4.246 7 C 0.390 3.610 8 O -0.473 6.473 9 C 0.004 3.996 10 C -0.173 4.173 11 C 0.544 3.456 12 O -0.531 6.531 13 N -0.706 5.706 14 C 0.266 3.734 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.145 0.855 32 H 0.385 0.615 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 11.498 1.213 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.164 3.836 4 C -0.257 4.257 5 C -0.020 4.020 6 C -0.248 4.248 7 C 0.250 3.750 8 O -0.348 6.348 9 C -0.015 4.015 10 C -0.177 4.177 11 C 0.329 3.671 12 O -0.409 6.409 13 N -0.355 5.355 14 C 0.164 3.836 15 H 0.068 0.932 16 C -0.206 4.206 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.219 0.781 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.530 10.795 1.227 16.585 hybrid contribution 0.908 0.553 -0.371 1.126 sum -11.622 11.348 0.857 16.267 Atomic orbital electron populations 1.23229 0.78698 1.04578 1.01177 1.86426 1.20781 1.25316 1.85299 1.19442 0.91266 0.84845 0.88027 1.21195 1.00492 0.91800 1.12188 1.21251 0.93690 0.97382 0.89724 1.20695 0.94598 0.95905 1.13564 1.23925 0.95139 0.86309 0.69602 1.90509 1.69682 1.38528 1.36081 1.21515 1.00200 0.89966 0.89849 1.19749 0.91016 0.95131 1.11764 1.17867 0.82994 0.87785 0.78425 1.90785 1.71456 1.28624 1.50018 1.46458 1.04869 1.11635 1.72507 1.18751 0.89283 0.81492 0.94030 0.93237 1.22079 0.98491 1.02639 0.97343 1.21167 0.98029 0.96510 1.41583 0.92115 1.24883 0.98764 0.94859 0.95152 1.69896 1.35325 1.01068 1.45748 0.86506 0.83259 0.77641 0.79662 1.20149 1.21154 1.20188 0.87746 0.92485 0.92462 0.84442 0.84595 0.87702 0.83741 0.78147 0.89145 0.95459 0.96601 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.80 101.05 0.99 1.17 16 2 O -0.27 -4.22 8.54 -39.95 -0.34 -4.56 16 3 C 0.21 3.15 6.71 -38.47 -0.26 2.89 16 4 C -0.24 -2.68 9.00 -39.55 -0.36 -3.04 16 5 C 0.00 -0.02 9.58 -39.09 -0.37 -0.40 16 6 C -0.25 -2.76 5.86 -105.12 -0.62 -3.38 16 7 C 0.39 3.92 11.43 34.24 0.39 4.31 16 8 O -0.47 -6.26 17.15 5.55 0.10 -6.17 16 9 C 0.00 0.05 9.27 -38.72 -0.36 -0.31 16 10 C -0.17 -2.76 5.88 -104.91 -0.62 -3.38 16 11 C 0.54 11.21 7.73 -12.45 -0.10 11.11 16 12 O -0.53 -13.04 14.81 -16.65 -0.25 -13.29 16 13 N -0.71 -14.56 5.02 -55.97 -0.28 -14.84 16 14 C 0.27 6.72 2.56 -69.08 -0.18 6.54 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 17 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 21 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.06 0.45 7.64 -51.93 -0.40 0.05 16 28 H 0.14 1.15 6.27 -52.48 -0.33 0.82 16 29 H 0.14 1.31 7.63 -52.49 -0.40 0.91 16 30 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.15 1.43 6.39 -52.48 -0.34 1.10 16 32 H 0.39 6.61 6.56 -40.82 -0.27 6.34 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -33.55 313.14 -6.04 -39.59 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.07 Total: 3.58 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.52 Total: -0.30 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.49 Total: -24.01 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.55 -6.04 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865054889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.121 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds