Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35440 * 116.99690 * 2 1 4 4 C 1.39021 * 119.98113 * 359.72851 * 3 2 1 5 5 C 1.37523 * 120.27034 * 179.75773 * 4 3 2 6 6 C 1.40251 * 120.21426 * 0.52038 * 5 4 3 7 7 C 1.46907 * 120.02823 * 179.76387 * 6 5 4 8 8 O 1.21294 * 119.99720 * 359.97013 * 7 6 5 9 9 C 1.39604 * 119.94914 * 359.73253 * 6 5 4 10 10 C 1.39184 * 119.73893 * 0.02562 * 9 6 5 11 11 C 1.47583 * 120.11068 * 179.97438 * 10 9 6 12 12 O 1.21583 * 119.99864 * 180.02562 * 11 10 9 13 13 N 1.34771 * 120.00255 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00313 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.47474 * 34.99890 * 14 13 11 16 16 C 1.53003 * 109.47041 * 274.99929 * 14 13 11 17 17 C 1.50703 * 109.47345 * 155.00307 * 14 13 11 18 18 H 1.07996 * 119.99863 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00309 * 180.02562 * 17 14 13 20 20 N 1.31522 * 119.99795 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00154 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47318 * 59.99929 * 21 19 17 23 23 H 1.48504 * 109.47075 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47102 * 299.99587 * 21 19 17 25 25 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47054 * 299.99597 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99652 * 1 2 3 28 28 H 1.08008 * 119.86401 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.88939 * 180.22989 * 5 4 3 30 30 H 1.07992 * 120.00487 * 179.97438 * 7 6 5 31 31 H 1.08008 * 120.13222 * 180.02562 * 9 6 5 32 32 H 0.97003 * 119.99498 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.47021 * 179.97438 * 16 14 13 34 34 H 1.09004 * 109.47351 * 299.99920 * 16 14 13 35 35 H 1.08999 * 109.46978 * 60.00338 * 16 14 13 36 36 H 0.96994 * 119.99776 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 6 1.2863 2.3724 -0.0057 5 6 1.9043 3.6010 -0.0007 6 6 3.3042 3.6868 -0.0008 7 6 3.9602 5.0013 -0.0007 8 8 3.2910 6.0129 -0.0011 9 6 4.0739 2.5221 -0.0004 10 6 3.4462 1.2798 -0.0004 11 6 4.2519 0.0432 -0.0005 12 8 3.7015 -1.0409 -0.0009 13 7 5.5976 0.1157 -0.0001 14 6 6.3973 -1.1117 0.0004 15 1 5.8906 -1.8758 -0.5890 16 6 6.5700 -1.6074 1.4376 17 6 7.7507 -0.8298 -0.5996 18 1 7.9909 0.1642 -0.9470 19 6 8.6819 -1.8410 -0.7061 20 7 8.3891 -3.0516 -0.2835 21 14 10.3591 -1.4917 -1.4505 22 1 11.0500 -0.4510 -0.6476 23 1 11.1693 -2.7362 -1.4510 24 1 10.1911 -1.0105 -2.8453 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2078 2.3129 -0.0105 29 1 1.3098 4.5025 -0.0014 30 1 5.0381 5.0669 -0.0004 31 1 5.1521 2.5847 -0.0001 32 1 6.0367 0.9807 -0.0001 33 1 7.1646 -2.5209 1.4379 34 1 7.0768 -0.8433 2.0271 35 1 5.5911 -1.8113 1.8716 36 1 9.0441 -3.7631 -0.3588 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865054889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -103.332156 kcal Electronic energy + Delta-G solvation = -20967.485983 eV Core-core repulsion = 17609.553728 eV Total energy + Delta-G solvation = -3357.932255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69870 -40.11553 -39.89694 -37.95609 -36.64715 -34.36709 -32.73005 -31.75068 -30.51546 -28.34517 -27.31065 -25.55927 -24.75475 -23.24480 -21.85965 -21.03270 -19.68177 -18.66350 -17.90394 -17.68388 -16.99904 -16.85842 -16.60274 -16.10531 -15.89365 -15.71186 -15.49496 -15.17245 -14.65691 -14.48268 -14.23454 -13.80090 -13.70361 -13.40363 -12.97868 -12.95162 -12.81846 -12.69534 -12.25873 -12.21020 -12.11661 -12.05787 -11.08934 -10.87426 -10.64620 -10.52925 -10.25913 -9.73601 -9.34982 -8.13904 -6.31641 -0.38226 -0.08601 1.34296 1.48659 1.50907 1.58468 2.12205 2.23672 2.36304 2.59643 2.84362 3.16861 3.37519 3.61510 3.67160 3.94739 4.15960 4.29522 4.35178 4.38467 4.51398 4.68434 4.70586 4.79292 4.89296 4.94775 5.06161 5.12661 5.22562 5.46491 5.51645 5.63555 5.71457 5.93886 6.12204 6.31352 6.51922 6.75607 6.99172 7.35602 7.57934 8.92464 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.004788 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.171643 B = 5846.259501 C = 7147.029019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.199 3.801 4 C -0.227 4.227 5 C 0.003 3.997 6 C -0.246 4.246 7 C 0.401 3.599 8 O -0.505 6.505 9 C 0.018 3.982 10 C -0.206 4.206 11 C 0.541 3.459 12 O -0.582 6.582 13 N -0.700 5.700 14 C 0.272 3.728 15 H -0.004 1.004 16 C -0.133 4.133 17 C -0.545 4.545 18 H 0.078 0.922 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.974 3.026 22 H -0.261 1.261 23 H -0.289 1.289 24 H -0.271 1.271 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.404 0.596 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.008 0.992 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 14.625 0.978 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.149 3.851 4 C -0.246 4.246 5 C -0.015 4.015 6 C -0.248 4.248 7 C 0.263 3.737 8 O -0.381 6.381 9 C -0.001 4.001 10 C -0.210 4.210 11 C 0.330 3.670 12 O -0.464 6.464 13 N -0.351 5.351 14 C 0.169 3.831 15 H 0.014 0.986 16 C -0.192 4.192 17 C -0.583 4.583 18 H 0.096 0.904 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.798 3.202 22 H -0.186 1.186 23 H -0.215 1.215 24 H -0.196 1.196 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.186 0.814 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.185 0.815 32 H 0.241 0.759 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.269 13.976 0.996 18.624 hybrid contribution 0.694 -0.399 -0.294 0.852 sum -11.575 13.577 0.703 17.855 Atomic orbital electron populations 1.23536 0.76125 1.05711 1.03151 1.86370 1.23725 1.26574 1.85533 1.19702 0.91169 0.85701 0.88483 1.21431 1.01788 0.90505 1.10830 1.21607 0.94060 0.97853 0.87987 1.20954 0.94828 0.96267 1.12722 1.24434 0.96691 0.84808 0.67780 1.90519 1.70662 1.39259 1.37644 1.21652 1.01363 0.88788 0.88281 1.19471 0.91424 0.94058 1.16054 1.18558 0.82844 0.88937 0.76706 1.90744 1.72304 1.31132 1.52227 1.46144 1.05049 1.11042 1.72815 1.18344 0.89348 0.82205 0.93232 0.98572 1.21897 0.97743 1.02017 0.97519 1.21515 0.98046 0.97333 1.41447 0.90388 1.25822 1.02803 0.94530 0.95480 1.70062 1.36615 1.02116 1.46953 0.85369 0.78283 0.77527 0.78972 1.18576 1.21494 1.19589 0.87284 0.90376 0.90425 0.81449 0.82771 0.83254 0.81500 0.75942 0.91491 0.93807 0.97280 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 16 2 O -0.31 -9.95 8.54 -66.39 -0.57 -10.51 16 3 C 0.20 5.75 6.71 22.99 0.15 5.90 16 4 C -0.23 -4.56 9.00 22.29 0.20 -4.36 16 5 C 0.00 0.06 9.58 22.59 0.22 0.28 16 6 C -0.25 -4.72 5.86 -20.19 -0.12 -4.84 16 7 C 0.40 6.46 11.43 70.09 0.80 7.26 16 8 O -0.50 -11.70 17.15 -3.07 -0.05 -11.75 16 9 C 0.02 0.40 9.27 22.83 0.21 0.61 16 10 C -0.21 -6.52 5.88 -20.05 -0.12 -6.64 16 11 C 0.54 23.00 7.73 86.71 0.67 23.68 16 12 O -0.58 -30.36 14.81 17.00 0.25 -30.11 16 13 N -0.70 -29.25 5.02 -449.24 -2.25 -31.50 16 14 C 0.27 14.20 2.56 44.25 0.11 14.31 16 15 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 16 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 17 C -0.55 -28.37 8.73 25.60 0.22 -28.15 16 18 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 19 C 0.01 0.72 5.30 84.65 0.45 1.17 16 20 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 21 Si 0.97 41.25 29.54 68.60 2.03 43.28 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 1.07 7.66 -2.38 -0.02 1.05 16 27 H 0.08 1.08 7.64 -2.39 -0.02 1.06 16 28 H 0.17 2.24 6.27 -2.91 -0.02 2.22 16 29 H 0.15 2.39 7.63 -2.91 -0.02 2.37 16 30 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.17 2.78 6.39 -2.91 -0.02 2.77 16 32 H 0.40 13.42 6.56 -92.71 -0.61 12.81 16 33 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 34 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -76.72 313.14 4.74 -71.98 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.51 Total: 16.70 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.58 Total: 4.36 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.01 Total: -83.94 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.37 Total: -52.37 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.72 4.74 -71.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865054889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.351 kcal (2) G-P(sol) polarization free energy of solvation -76.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds