Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99989 * 2 1 4 4 C 1.52993 * 110.01835 * 57.92209 * 3 2 1 5 5 S 1.81400 * 109.47048 * 63.67413 * 4 3 2 6 6 O 1.42100 * 110.54222 * 75.22419 * 5 4 3 7 7 O 1.42098 * 110.54307 * 298.47112 * 5 4 3 8 8 N 1.65602 * 104.44967 * 186.84699 * 5 4 3 9 9 C 1.46494 * 120.00138 * 65.00107 * 8 5 4 10 10 C 1.50705 * 109.47384 * 165.00024 * 9 8 5 11 11 H 1.07995 * 119.99723 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00048 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00138 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99950 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46935 * 89.99874 * 14 12 10 16 16 H 1.48490 * 109.47355 * 209.99903 * 14 12 10 17 17 H 1.48503 * 109.47383 * 330.00230 * 14 12 10 18 18 C 1.54268 * 110.03165 * 179.31793 * 3 2 1 19 19 C 1.54965 * 104.16087 * 95.75362 * 18 3 2 20 20 C 1.54892 * 102.77825 * 37.88676 * 19 18 3 21 21 C 1.53879 * 110.03040 * 296.53127 * 3 2 1 22 22 H 1.09005 * 109.47045 * 173.48591 * 1 2 3 23 23 H 1.08995 * 109.47205 * 293.48536 * 1 2 3 24 24 H 1.09002 * 109.46977 * 53.48876 * 1 2 3 25 25 H 1.09001 * 109.47431 * 303.67548 * 4 3 2 26 26 H 1.08999 * 109.47399 * 183.67492 * 4 3 2 27 27 H 0.97003 * 119.99751 * 245.00035 * 8 5 4 28 28 H 1.09003 * 109.47018 * 285.00018 * 9 8 5 29 29 H 1.09004 * 109.46937 * 44.99843 * 9 8 5 30 30 H 0.97001 * 119.99793 * 180.02562 * 13 12 10 31 31 H 1.09000 * 110.48271 * 214.39845 * 18 3 2 32 32 H 1.08998 * 110.48540 * 337.04017 * 18 3 2 33 33 H 1.09002 * 110.71767 * 279.56779 * 19 18 3 34 34 H 1.08999 * 110.76511 * 156.21968 * 19 18 3 35 35 H 1.09000 * 110.48197 * 203.40967 * 20 19 18 36 36 H 1.08993 * 110.48624 * 80.76557 * 20 19 18 37 37 H 1.09005 * 110.02883 * 359.95529 * 21 3 2 38 38 H 1.09002 * 110.02948 * 121.38128 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5258 2.0944 1.2180 5 16 2.1051 1.2830 2.7335 6 8 3.4905 1.5286 2.9322 7 8 1.5727 -0.0309 2.8304 8 7 1.3630 2.1157 3.9576 9 6 -0.0953 2.0763 4.0913 10 6 -0.4888 2.5858 5.4539 11 1 0.2714 2.9064 6.1507 12 6 -1.8192 2.6416 5.8113 13 7 -2.7449 2.2497 4.9632 14 14 -2.3069 3.2724 7.5005 15 1 -2.5185 4.7410 7.4383 16 1 -3.5632 2.6093 7.9329 17 1 -1.2267 2.9688 8.4733 18 6 3.5491 1.1988 0.0173 19 6 3.9540 1.3156 -1.4740 20 6 2.9584 2.3703 -2.0177 21 6 1.6346 2.0497 -1.2935 22 1 -0.3633 -1.0211 -0.1166 23 1 -0.3633 0.4095 0.9425 24 1 -0.3633 0.6115 -0.8260 25 1 0.4364 2.1296 1.2184 26 1 1.9220 3.1090 1.1749 27 1 1.8940 2.6294 4.5861 28 1 -0.5476 2.7045 3.3239 29 1 -0.4434 1.0502 3.9725 30 1 -3.6810 2.2893 5.2146 31 1 3.9816 2.0157 0.5949 32 1 3.8602 0.2364 0.4236 33 1 3.8234 0.3616 -1.9849 34 1 4.9808 1.6685 -1.5691 35 1 2.8393 2.2623 -3.0957 36 1 3.2953 3.3766 -1.7690 37 1 1.0097 1.4146 -1.9215 38 1 1.1072 2.9729 -1.0533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867201839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = -130.846535 kcal Electronic energy + Delta-G solvation = -20966.480542 eV Core-core repulsion = 17742.799125 eV Total energy + Delta-G solvation = -3223.681416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73013 -36.56925 -35.69325 -35.33202 -34.62990 -32.17631 -30.89510 -29.11127 -26.88924 -26.74153 -25.02493 -22.52681 -21.00387 -19.84044 -18.78742 -17.42965 -17.05295 -16.17495 -16.01524 -15.45957 -15.09928 -14.92357 -14.67354 -14.59406 -14.30411 -13.46532 -13.25688 -12.74698 -12.46342 -12.17110 -12.13291 -11.87504 -11.75874 -11.57666 -11.37294 -11.35869 -11.21194 -11.16993 -10.97238 -10.79789 -10.72569 -10.67375 -10.25141 -10.12025 -9.54121 -9.45404 -8.89230 -8.22778 -6.21632 -4.25940 0.82709 3.23121 3.29846 3.33030 3.45637 3.72073 4.18687 4.32061 4.32365 4.38259 4.60426 4.71740 4.97320 5.15476 5.19338 5.28608 5.33586 5.44481 5.50125 5.53406 5.59255 5.69088 5.74854 5.82759 5.88618 5.93739 6.02501 6.08008 6.19984 6.41446 7.19374 7.21635 7.30557 7.76538 7.81312 8.15353 8.78517 9.39417 10.88949 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.004971 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.260831 B = 5631.240224 C = 5940.428806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.368 6.368 3 C 0.129 3.871 4 C -0.670 4.670 5 S 2.614 3.386 6 O -0.978 6.978 7 O -0.945 6.945 8 N -1.110 6.110 9 C 0.243 3.757 10 C -0.529 4.529 11 H 0.066 0.934 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.142 4.142 22 H 0.091 0.909 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.409 0.591 28 H 0.018 0.982 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 0.958 -13.533 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.287 6.287 3 C 0.088 3.912 4 C -0.797 4.797 5 S 2.704 3.296 6 O -0.968 6.968 7 O -0.934 6.934 8 N -0.871 5.871 9 C 0.120 3.880 10 C -0.569 4.569 11 H 0.084 0.916 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.179 4.179 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.181 4.181 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.242 0.758 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.510 -0.075 -13.591 16.036 hybrid contribution -1.032 1.431 0.865 1.964 sum 7.478 1.356 -12.727 14.823 Atomic orbital electron populations 1.22884 0.80561 1.03218 1.00717 1.88044 1.20411 1.25506 1.94691 1.21767 0.94000 0.83223 0.92188 1.31416 1.14018 1.13803 1.20438 1.04739 0.73792 0.75491 0.75588 1.93525 1.31899 1.86525 1.84874 1.93585 1.80001 1.34992 1.84853 1.55588 1.18757 1.69229 1.43563 1.19076 0.72723 0.97818 0.98383 1.21203 0.92425 1.43949 0.99289 0.91590 1.24977 0.96249 0.95110 0.97877 1.69928 1.00888 1.46673 1.35521 0.86400 0.78158 0.78800 0.83515 1.20493 1.20976 1.19646 1.22834 0.91485 1.04553 0.99004 1.22448 0.99019 0.99518 0.94474 1.22334 0.94714 0.99291 0.99700 1.22785 0.98619 1.00814 0.95874 0.89074 0.92935 0.93785 0.84377 0.84298 0.75779 0.96461 0.94321 0.92442 0.88505 0.89579 0.90860 0.90938 0.91348 0.91293 0.90315 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.13 101.05 1.02 1.34 16 2 O -0.37 -5.79 9.35 -44.01 -0.41 -6.20 16 3 C 0.13 1.80 0.68 -89.50 -0.06 1.74 16 4 C -0.67 -9.90 4.40 37.15 0.16 -9.74 16 5 S 2.61 49.25 4.88 -107.50 -0.52 48.72 16 6 O -0.98 -19.15 16.56 -57.54 -0.95 -20.10 16 7 O -0.94 -21.04 16.69 -62.45 -1.04 -22.09 16 8 N -1.11 -22.88 5.88 -11.65 -0.07 -22.95 16 9 C 0.24 5.99 5.89 -5.19 -0.03 5.96 16 10 C -0.53 -14.22 9.27 -34.44 -0.32 -14.54 16 11 H 0.07 1.71 7.65 -52.49 -0.40 1.30 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 18 C -0.14 -1.86 4.82 -25.03 -0.12 -1.98 16 19 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 20 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 21 C -0.14 -1.58 5.59 -25.61 -0.14 -1.72 16 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 24 H 0.04 0.51 6.46 -51.93 -0.34 0.17 16 25 H 0.14 2.02 6.50 -51.92 -0.34 1.69 16 26 H 0.14 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.41 7.84 8.50 -34.47 -0.29 7.55 16 28 H 0.02 0.43 8.12 -51.93 -0.42 0.00 16 29 H 0.04 1.04 7.69 -51.93 -0.40 0.64 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 32 H 0.09 1.21 8.07 -51.93 -0.42 0.79 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.84 6.70 -51.93 -0.35 0.49 16 38 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -32.26 315.70 -8.19 -40.45 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.74 Total: 6.21 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 0.07 Total: -20.06 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.67 Total: -47.40 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.41 Total: -48.39 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -0.52 Total: 48.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.26 -8.19 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867201839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.398 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds