Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99989 * 2 1 4 4 C 1.52993 * 110.01835 * 57.92209 * 3 2 1 5 5 S 1.81400 * 109.47048 * 63.67413 * 4 3 2 6 6 O 1.42100 * 110.54222 * 75.22419 * 5 4 3 7 7 O 1.42098 * 110.54307 * 298.47112 * 5 4 3 8 8 N 1.65602 * 104.44967 * 186.84699 * 5 4 3 9 9 C 1.46494 * 120.00138 * 65.00107 * 8 5 4 10 10 C 1.50705 * 109.47384 * 165.00024 * 9 8 5 11 11 H 1.07995 * 119.99723 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00048 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00138 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99950 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46935 * 89.99874 * 14 12 10 16 16 H 1.48490 * 109.47355 * 209.99903 * 14 12 10 17 17 H 1.48503 * 109.47383 * 330.00230 * 14 12 10 18 18 C 1.54268 * 110.03165 * 179.31793 * 3 2 1 19 19 C 1.54965 * 104.16087 * 95.75362 * 18 3 2 20 20 C 1.54892 * 102.77825 * 37.88676 * 19 18 3 21 21 C 1.53879 * 110.03040 * 296.53127 * 3 2 1 22 22 H 1.09005 * 109.47045 * 173.48591 * 1 2 3 23 23 H 1.08995 * 109.47205 * 293.48536 * 1 2 3 24 24 H 1.09002 * 109.46977 * 53.48876 * 1 2 3 25 25 H 1.09001 * 109.47431 * 303.67548 * 4 3 2 26 26 H 1.08999 * 109.47399 * 183.67492 * 4 3 2 27 27 H 0.97003 * 119.99751 * 245.00035 * 8 5 4 28 28 H 1.09003 * 109.47018 * 285.00018 * 9 8 5 29 29 H 1.09004 * 109.46937 * 44.99843 * 9 8 5 30 30 H 0.97001 * 119.99793 * 180.02562 * 13 12 10 31 31 H 1.09000 * 110.48271 * 214.39845 * 18 3 2 32 32 H 1.08998 * 110.48540 * 337.04017 * 18 3 2 33 33 H 1.09002 * 110.71767 * 279.56779 * 19 18 3 34 34 H 1.08999 * 110.76511 * 156.21968 * 19 18 3 35 35 H 1.09000 * 110.48197 * 203.40967 * 20 19 18 36 36 H 1.08993 * 110.48624 * 80.76557 * 20 19 18 37 37 H 1.09005 * 110.02883 * 359.95529 * 21 3 2 38 38 H 1.09002 * 110.02948 * 121.38128 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5258 2.0944 1.2180 5 16 2.1051 1.2830 2.7335 6 8 3.4905 1.5286 2.9322 7 8 1.5727 -0.0309 2.8304 8 7 1.3630 2.1157 3.9576 9 6 -0.0953 2.0763 4.0913 10 6 -0.4888 2.5858 5.4539 11 1 0.2714 2.9064 6.1507 12 6 -1.8192 2.6416 5.8113 13 7 -2.7449 2.2497 4.9632 14 14 -2.3069 3.2724 7.5005 15 1 -2.5185 4.7410 7.4383 16 1 -3.5632 2.6093 7.9329 17 1 -1.2267 2.9688 8.4733 18 6 3.5491 1.1988 0.0173 19 6 3.9540 1.3156 -1.4740 20 6 2.9584 2.3703 -2.0177 21 6 1.6346 2.0497 -1.2935 22 1 -0.3633 -1.0211 -0.1166 23 1 -0.3633 0.4095 0.9425 24 1 -0.3633 0.6115 -0.8260 25 1 0.4364 2.1296 1.2184 26 1 1.9220 3.1090 1.1749 27 1 1.8940 2.6294 4.5861 28 1 -0.5476 2.7045 3.3239 29 1 -0.4434 1.0502 3.9725 30 1 -3.6810 2.2893 5.2146 31 1 3.9816 2.0157 0.5949 32 1 3.8602 0.2364 0.4236 33 1 3.8234 0.3616 -1.9849 34 1 4.9808 1.6685 -1.5691 35 1 2.8393 2.2623 -3.0957 36 1 3.2953 3.3766 -1.7690 37 1 1.0097 1.4146 -1.9215 38 1 1.1072 2.9729 -1.0533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867201839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = -154.888718 kcal Electronic energy + Delta-G solvation = -20967.523089 eV Core-core repulsion = 17742.799125 eV Total energy + Delta-G solvation = -3224.723964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76940 -38.14878 -36.95854 -36.71085 -36.48477 -34.15437 -32.00379 -30.01803 -28.74197 -27.96877 -26.05034 -24.51066 -21.84955 -20.94185 -20.30853 -19.18904 -18.27430 -17.81885 -17.36811 -17.10925 -16.46148 -16.30729 -16.00288 -15.55839 -15.51889 -15.10616 -14.58822 -14.17010 -14.08837 -13.68191 -13.58781 -13.26881 -13.11777 -13.01427 -12.79616 -12.76709 -12.53698 -12.38704 -12.14942 -12.06648 -12.03242 -11.83786 -11.53422 -11.43573 -11.40979 -10.89175 -10.62868 -10.07501 -8.28027 -6.40043 -0.67374 1.42960 1.44619 1.55379 1.89076 2.39687 2.61460 2.81020 3.06710 3.22595 3.26291 3.47368 3.62456 4.01004 4.14838 4.34833 4.36999 4.39400 4.43808 4.49322 4.56704 4.70703 4.78290 4.81243 4.88240 5.01764 5.04419 5.19098 5.21306 5.21642 5.27427 5.44333 5.71193 5.96406 6.12583 6.28250 6.73823 7.29931 8.83146 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.004971 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.260831 B = 5631.240224 C = 5940.428806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.388 6.388 3 C 0.118 3.882 4 C -0.647 4.647 5 S 2.611 3.389 6 O -0.988 6.988 7 O -0.988 6.988 8 N -1.113 6.113 9 C 0.255 3.745 10 C -0.553 4.553 11 H 0.071 0.929 12 C 0.010 3.990 13 N -0.925 5.925 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.153 4.153 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.140 4.140 22 H 0.098 0.902 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.142 0.858 26 H 0.173 0.827 27 H 0.414 0.586 28 H 0.019 0.981 29 H 0.007 0.993 30 H 0.270 0.730 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.478 2.641 -14.702 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.308 6.308 3 C 0.077 3.923 4 C -0.779 4.779 5 S 2.707 3.293 6 O -0.978 6.978 7 O -0.978 6.978 8 N -0.873 5.873 9 C 0.130 3.870 10 C -0.592 4.592 11 H 0.089 0.911 12 C -0.190 4.190 13 N -0.563 5.563 14 Si 0.796 3.204 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.191 4.191 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.179 4.179 22 H 0.117 0.883 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.160 0.840 26 H 0.191 0.809 27 H 0.248 0.752 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.860 1.593 -14.711 17.247 hybrid contribution -1.083 0.878 1.150 1.807 sum 7.777 2.471 -13.561 15.827 Atomic orbital electron populations 1.23003 0.80120 1.04311 1.00595 1.88028 1.21092 1.26867 1.94786 1.22115 0.94417 0.82835 0.92936 1.31241 1.14246 1.15085 1.17318 1.04608 0.73356 0.74799 0.76504 1.93506 1.32230 1.86494 1.85620 1.93530 1.80447 1.37873 1.85970 1.55440 1.17122 1.69343 1.45368 1.18704 0.74751 0.95728 0.97813 1.21620 0.93037 1.44187 1.00379 0.91112 1.25873 0.96222 0.95148 1.01767 1.70035 1.01311 1.47530 1.37466 0.85342 0.77713 0.78651 0.78686 1.19226 1.20720 1.19167 1.22964 0.91134 1.03587 1.01404 1.22473 1.00404 1.00149 0.92025 1.22367 0.93091 0.99498 1.00587 1.22802 0.99965 1.00904 0.94195 0.88310 0.95305 0.90865 0.84011 0.80941 0.75213 0.96285 0.97501 0.92150 0.88312 0.91535 0.90875 0.89132 0.89409 0.90010 0.89680 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.13 113.37 1.15 1.58 16 2 O -0.39 -12.11 9.35 -140.59 -1.31 -13.43 16 3 C 0.12 3.11 0.68 -10.07 -0.01 3.11 16 4 C -0.65 -18.37 4.40 71.98 0.32 -18.05 16 5 S 2.61 99.93 4.88 -56.49 -0.28 99.66 16 6 O -0.99 -38.87 16.56 -127.65 -2.11 -40.98 16 7 O -0.99 -45.94 16.69 -122.96 -2.05 -48.00 16 8 N -1.11 -46.61 5.88 -190.79 -1.12 -47.74 16 9 C 0.25 12.85 5.89 85.64 0.50 13.35 16 10 C -0.55 -29.97 9.27 25.60 0.24 -29.73 16 11 H 0.07 3.66 7.65 -2.91 -0.02 3.64 16 12 C 0.01 0.55 5.46 84.65 0.46 1.01 16 13 N -0.92 -52.69 13.29 21.45 0.28 -52.40 16 14 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 C -0.15 -3.85 4.82 31.70 0.15 -3.70 16 19 C -0.11 -2.01 6.91 31.91 0.22 -1.79 16 20 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 21 C -0.14 -2.67 5.59 31.32 0.18 -2.49 16 22 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 23 H 0.03 0.93 6.71 -2.39 -0.02 0.91 16 24 H 0.07 1.57 6.46 -2.39 -0.02 1.56 16 25 H 0.14 4.04 6.50 -2.39 -0.02 4.02 16 26 H 0.17 3.71 8.14 -2.39 -0.02 3.69 16 27 H 0.41 16.05 8.50 -96.74 -0.82 15.22 16 28 H 0.02 0.95 8.12 -2.39 -0.02 0.94 16 29 H 0.01 0.40 7.69 -2.38 -0.02 0.38 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.10 2.39 7.00 -2.39 -0.02 2.37 16 32 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.53 6.70 -2.38 -0.02 1.52 16 38 H 0.09 1.46 7.67 -2.39 -0.02 1.45 16 Total: -1.00 -70.01 315.70 -0.90 -70.92 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.23 Total: 25.98 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.43 Total: -38.26 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -0.84 Total: -100.14 kcal Atomic # 8 Polarization: -96.93 SS G_CDS: -5.48 Total: -102.41 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 99.93 SS G_CDS: -0.28 Total: 99.66 kcal Total: -70.01 -0.90 -70.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867201839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.973 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds