Wall clock time and date at job start Mon Mar 30 2020 02:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35433 * 117.00305 * 2 1 4 4 C 1.39023 * 119.97489 * 359.72848 * 3 2 1 5 5 C 1.37525 * 120.26506 * 180.27698 * 4 3 2 6 6 C 1.40249 * 120.22276 * 359.97438 * 5 4 3 7 7 C 1.46905 * 120.02934 * 180.02562 * 6 5 4 8 8 O 1.21292 * 119.99791 * 179.97438 * 7 6 5 9 9 C 1.39612 * 119.94700 * 0.02562 * 6 5 4 10 10 C 1.39187 * 119.73295 * 0.02562 * 9 6 5 11 11 C 1.47582 * 120.10706 * 179.97438 * 10 9 6 12 12 O 1.21586 * 120.00227 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00013 * 0.02562 * 11 10 9 14 14 C 1.46496 * 119.99888 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47167 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47384 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00430 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99679 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00631 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46964 * 89.99583 * 20 18 16 22 22 H 1.48500 * 109.47270 * 209.99871 * 20 18 16 23 23 H 1.48506 * 109.46869 * 330.00147 * 20 18 16 24 24 H 1.09002 * 109.47056 * 59.99811 * 1 2 3 25 25 H 1.08996 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46844 * 299.99769 * 1 2 3 27 27 H 1.07997 * 119.86885 * 0.24910 * 4 3 2 28 28 H 1.08004 * 119.89049 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.00018 * 359.97438 * 7 6 5 30 30 H 1.07992 * 120.13379 * 180.02562 * 9 6 5 31 31 H 0.96999 * 119.99833 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47972 * 300.00109 * 14 13 11 33 33 H 1.09000 * 109.47172 * 60.00050 * 14 13 11 34 34 H 1.08996 * 109.47587 * 300.00482 * 15 14 13 35 35 H 1.09003 * 109.47203 * 60.00266 * 15 14 13 36 36 H 0.96993 * 119.99597 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 6 1.2863 2.3723 -0.0057 5 6 1.9045 3.6008 -0.0115 6 6 3.3044 3.6866 -0.0111 7 6 3.9603 5.0011 -0.0167 8 8 5.1710 5.0747 -0.0159 9 6 4.0740 2.5218 -0.0054 10 6 3.4462 1.2796 -0.0006 11 6 4.2518 0.0431 0.0048 12 8 3.7014 -1.0411 0.0085 13 7 5.5976 0.1155 0.0057 14 6 6.3972 -1.1120 0.0117 15 6 7.8843 -0.7519 0.0109 16 6 8.7068 -2.0146 0.0165 17 1 8.2180 -2.9776 0.0198 18 6 10.0836 -1.9405 0.0173 19 7 10.6791 -0.7678 0.0127 20 14 11.1033 -3.5056 0.0234 21 1 11.3746 -3.9252 -1.3750 22 1 12.3889 -3.2561 0.7236 23 1 10.3570 -4.5799 0.7266 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2079 2.3129 -0.0061 28 1 1.3100 4.5025 -0.0163 29 1 3.3646 5.9018 -0.0216 30 1 5.1521 2.5844 -0.0047 31 1 6.0367 0.9804 0.0024 32 1 6.1643 -1.6931 0.9040 33 1 6.1658 -1.7007 -0.8759 34 1 8.1170 -0.1710 -0.8815 35 1 8.1161 -0.1630 0.8984 36 1 11.6476 -0.7157 0.0137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867344543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:57 Heat of formation + Delta-G solvation = -86.369771 kcal Electronic energy + Delta-G solvation = -20467.480624 eV Core-core repulsion = 17110.283913 eV Total energy + Delta-G solvation = -3357.196710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80067 -39.18853 -38.74795 -37.09482 -34.79291 -32.89326 -31.86058 -30.78653 -29.41836 -27.77673 -25.13893 -24.44646 -23.64944 -21.51077 -20.70298 -20.10547 -18.56802 -17.46731 -16.74384 -16.35366 -16.06987 -15.72997 -15.23305 -14.99014 -14.78239 -14.75213 -14.40896 -14.36474 -13.67416 -13.25329 -13.16573 -12.94892 -12.48879 -12.27782 -12.17304 -11.47562 -11.34185 -11.14511 -10.99919 -10.60534 -10.28386 -10.08187 -9.73191 -9.41708 -9.41183 -9.15500 -8.60155 -8.45367 -8.27241 -6.04626 -4.07580 0.41582 0.76069 2.12866 2.96407 3.10069 3.32776 3.38562 3.42498 3.62020 3.81625 4.01194 4.33095 4.43306 4.47869 4.70850 4.87546 4.91238 4.95778 5.07933 5.23623 5.27860 5.32165 5.50347 5.72967 5.81993 5.95438 6.27680 6.39869 6.40155 6.78628 6.95490 7.06645 7.24717 7.57147 7.67016 7.93488 8.04848 8.32467 8.69240 8.98422 9.56965 11.07004 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.003902 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.205415 B = 7174.617444 C = 8593.074183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.271 6.271 3 C 0.215 3.785 4 C -0.237 4.237 5 C -0.007 4.007 6 C -0.244 4.244 7 C 0.384 3.616 8 O -0.459 6.459 9 C 0.013 3.987 10 C -0.177 4.177 11 C 0.550 3.450 12 O -0.528 6.528 13 N -0.719 5.719 14 C 0.124 3.876 15 C 0.011 3.989 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.396 0.604 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.616 11.621 -0.058 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.165 3.835 4 C -0.256 4.256 5 C -0.026 4.026 6 C -0.245 4.245 7 C 0.243 3.757 8 O -0.331 6.331 9 C -0.006 4.006 10 C -0.181 4.181 11 C 0.336 3.664 12 O -0.406 6.406 13 N -0.370 5.370 14 C 0.002 3.998 15 C -0.026 4.026 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.120 0.880 30 H 0.164 0.836 31 H 0.230 0.770 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.078 10.707 -0.051 24.537 hybrid contribution 0.425 -0.224 -0.007 0.480 sum -21.653 10.483 -0.058 24.057 Atomic orbital electron populations 1.23240 0.78488 1.04675 1.01270 1.86403 1.20969 1.25360 1.85333 1.19403 0.91082 0.84990 0.88037 1.21182 1.00533 0.91817 1.12059 1.21247 0.93164 0.97524 0.90659 1.20754 0.94394 0.96249 1.13115 1.23865 0.89771 0.91548 0.70555 1.90590 1.17716 1.90061 1.34782 1.21573 1.00815 0.89876 0.88350 1.19577 0.90970 0.94687 1.12899 1.17899 0.82572 0.88113 0.77862 1.90794 1.71470 1.28701 1.49664 1.46280 1.05457 1.11448 1.73840 1.21736 0.92820 0.84402 1.00886 1.19338 0.87412 0.97924 0.97949 1.21044 0.91118 0.92480 1.51345 0.92233 1.25001 0.97993 0.96273 0.95026 1.69965 1.09579 1.23345 1.50346 0.86513 0.79536 0.83333 0.78171 1.20579 1.21182 1.19733 0.92364 0.87718 0.92371 0.84226 0.84390 0.87971 0.83617 0.76957 0.92421 0.92430 0.95876 0.95865 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.80 101.05 0.99 1.13 16 2 O -0.27 -3.71 8.54 -39.93 -0.34 -4.05 16 3 C 0.21 2.76 6.71 -38.47 -0.26 2.50 16 4 C -0.24 -2.05 9.00 -39.55 -0.36 -2.40 16 5 C -0.01 -0.05 9.77 -39.09 -0.38 -0.44 16 6 C -0.24 -2.40 5.86 -105.12 -0.62 -3.02 16 7 C 0.38 3.46 11.44 34.24 0.39 3.85 16 8 O -0.46 -6.30 17.15 5.55 0.10 -6.21 16 9 C 0.01 0.16 9.08 -38.72 -0.35 -0.19 16 10 C -0.18 -2.64 5.88 -104.91 -0.62 -3.25 16 11 C 0.55 10.34 7.76 -12.45 -0.10 10.25 16 12 O -0.53 -11.64 15.15 -16.65 -0.25 -11.89 16 13 N -0.72 -13.68 5.50 -61.34 -0.34 -14.01 16 14 C 0.12 2.76 5.61 -4.04 -0.02 2.73 16 15 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 16 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.69 5.46 -17.81 -0.10 1.59 16 19 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 20 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.06 0.34 7.64 -51.93 -0.40 -0.06 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.14 0.78 6.27 -52.49 -0.33 0.45 16 28 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 29 H 0.10 0.45 8.06 -52.49 -0.42 0.02 16 30 H 0.15 1.91 5.97 -52.49 -0.31 1.60 16 31 H 0.40 6.72 6.50 -40.82 -0.27 6.45 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -36.07 317.96 -6.40 -42.47 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.20 Total: 0.33 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.87 Total: -2.21 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.40 Total: -39.98 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.50 Total: -22.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.07 -6.40 -42.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.900 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds