Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35433 * 117.00305 * 2 1 4 4 C 1.39023 * 119.97489 * 359.72848 * 3 2 1 5 5 C 1.37525 * 120.26506 * 180.27698 * 4 3 2 6 6 C 1.40249 * 120.22276 * 359.97438 * 5 4 3 7 7 C 1.46905 * 120.02934 * 180.02562 * 6 5 4 8 8 O 1.21292 * 119.99791 * 179.97438 * 7 6 5 9 9 C 1.39612 * 119.94700 * 0.02562 * 6 5 4 10 10 C 1.39187 * 119.73295 * 0.02562 * 9 6 5 11 11 C 1.47582 * 120.10706 * 179.97438 * 10 9 6 12 12 O 1.21586 * 120.00227 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00013 * 0.02562 * 11 10 9 14 14 C 1.46496 * 119.99888 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47167 * 179.97438 * 14 13 11 16 16 C 1.50694 * 109.47384 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00430 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99679 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00631 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46964 * 89.99583 * 20 18 16 22 22 H 1.48500 * 109.47270 * 209.99871 * 20 18 16 23 23 H 1.48506 * 109.46869 * 330.00147 * 20 18 16 24 24 H 1.09002 * 109.47056 * 59.99811 * 1 2 3 25 25 H 1.08996 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46844 * 299.99769 * 1 2 3 27 27 H 1.07997 * 119.86885 * 0.24910 * 4 3 2 28 28 H 1.08004 * 119.89049 * 179.97438 * 5 4 3 29 29 H 1.07994 * 120.00018 * 359.97438 * 7 6 5 30 30 H 1.07992 * 120.13379 * 180.02562 * 9 6 5 31 31 H 0.96999 * 119.99833 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47972 * 300.00109 * 14 13 11 33 33 H 1.09000 * 109.47172 * 60.00050 * 14 13 11 34 34 H 1.08996 * 109.47587 * 300.00482 * 15 14 13 35 35 H 1.09003 * 109.47203 * 60.00266 * 15 14 13 36 36 H 0.96993 * 119.99597 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 6 1.2863 2.3723 -0.0057 5 6 1.9045 3.6008 -0.0115 6 6 3.3044 3.6866 -0.0111 7 6 3.9603 5.0011 -0.0167 8 8 5.1710 5.0747 -0.0159 9 6 4.0740 2.5218 -0.0054 10 6 3.4462 1.2796 -0.0006 11 6 4.2518 0.0431 0.0048 12 8 3.7014 -1.0411 0.0085 13 7 5.5976 0.1155 0.0057 14 6 6.3972 -1.1120 0.0117 15 6 7.8843 -0.7519 0.0109 16 6 8.7068 -2.0146 0.0165 17 1 8.2180 -2.9776 0.0198 18 6 10.0836 -1.9405 0.0173 19 7 10.6791 -0.7678 0.0127 20 14 11.1033 -3.5056 0.0234 21 1 11.3746 -3.9252 -1.3750 22 1 12.3889 -3.2561 0.7236 23 1 10.3570 -4.5799 0.7266 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2079 2.3129 -0.0061 28 1 1.3100 4.5025 -0.0163 29 1 3.3646 5.9018 -0.0216 30 1 5.1521 2.5844 -0.0047 31 1 6.0367 0.9804 0.0024 32 1 6.1643 -1.6931 0.9040 33 1 6.1658 -1.7007 -0.8759 34 1 8.1170 -0.1710 -0.8815 35 1 8.1161 -0.1630 0.8984 36 1 11.6476 -0.7157 0.0137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867344543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = -111.950330 kcal Electronic energy + Delta-G solvation = -20468.589880 eV Core-core repulsion = 17110.283913 eV Total energy + Delta-G solvation = -3358.305967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75587 -40.16455 -39.96303 -37.96716 -36.61701 -34.87973 -32.99833 -31.61273 -31.19981 -28.46457 -26.97976 -25.22250 -24.89043 -23.09361 -21.97066 -21.32578 -19.53087 -18.67749 -18.27808 -17.66450 -16.92892 -16.88010 -16.51457 -16.33482 -16.23905 -15.97606 -15.70811 -15.25959 -14.84164 -14.61957 -14.42200 -14.29219 -13.78719 -13.42165 -13.27029 -12.94972 -12.91958 -12.54514 -12.28556 -12.21343 -12.03585 -11.70942 -11.49601 -11.00007 -10.66685 -10.63365 -10.30920 -10.03313 -9.37499 -8.26079 -6.37844 -0.36636 -0.13320 1.35065 1.39887 1.41420 1.53015 1.98540 2.15815 2.23801 2.42589 2.79665 3.08172 3.34246 3.57444 3.67363 3.95496 4.15542 4.28016 4.33673 4.40679 4.41831 4.42948 4.46330 4.70272 4.77451 4.78979 4.99249 5.10565 5.18172 5.22483 5.43925 5.51633 5.54716 5.74546 6.11935 6.30557 6.54481 6.59438 6.75103 7.19157 7.31684 8.86177 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.003902 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.205415 B = 7174.617444 C = 8593.074183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.314 6.314 3 C 0.202 3.798 4 C -0.226 4.226 5 C 0.025 3.975 6 C -0.251 4.251 7 C 0.394 3.606 8 O -0.516 6.516 9 C -0.001 4.001 10 C -0.214 4.214 11 C 0.547 3.453 12 O -0.569 6.569 13 N -0.720 5.720 14 C 0.143 3.857 15 C 0.022 3.978 16 C -0.548 4.548 17 H 0.061 0.939 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.265 1.265 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.180 0.820 28 H 0.199 0.801 29 H 0.169 0.831 30 H 0.127 0.873 31 H 0.404 0.596 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.317 13.482 -0.077 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.224 6.224 3 C 0.152 3.848 4 C -0.245 4.245 5 C 0.007 3.993 6 C -0.253 4.253 7 C 0.257 3.743 8 O -0.392 6.392 9 C -0.020 4.020 10 C -0.218 4.218 11 C 0.336 3.664 12 O -0.450 6.450 13 N -0.371 5.371 14 C 0.020 3.980 15 C -0.015 4.015 16 C -0.586 4.586 17 H 0.079 0.921 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.794 3.206 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.100 0.900 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.197 0.803 28 H 0.216 0.784 29 H 0.185 0.815 30 H 0.145 0.855 31 H 0.240 0.760 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.813 12.595 -0.072 27.827 hybrid contribution 1.117 -0.715 -0.002 1.326 sum -23.696 11.880 -0.074 26.508 Atomic orbital electron populations 1.23570 0.75740 1.05777 1.03475 1.86339 1.24030 1.26606 1.85462 1.19677 0.90473 0.86373 0.88267 1.21638 1.02177 0.90462 1.10186 1.21879 0.91981 0.99195 0.86238 1.21130 0.95828 0.95656 1.12656 1.24751 0.89131 0.92672 0.67784 1.90599 1.20460 1.90569 1.37555 1.21532 1.00421 0.90699 0.89346 1.19286 0.91973 0.93089 1.17432 1.18593 0.82160 0.89421 0.76243 1.90745 1.72014 1.30631 1.51598 1.46135 1.05947 1.10654 1.74412 1.21242 0.91288 0.85579 0.99930 1.19140 0.89370 0.96825 0.96182 1.21447 0.92095 0.93268 1.51837 0.92120 1.25938 0.99197 0.99924 0.94226 1.70082 1.10143 1.25661 1.50848 0.85376 0.77717 0.78925 0.78609 1.19618 1.20360 1.18921 0.90017 0.87481 0.90041 0.80265 0.78392 0.81473 0.85519 0.75978 0.93367 0.93359 0.97556 0.97545 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.31 -8.53 8.54 -66.31 -0.57 -9.10 16 3 C 0.20 4.98 6.71 22.99 0.15 5.14 16 4 C -0.23 -2.92 9.00 22.29 0.20 -2.72 16 5 C 0.02 0.22 9.77 22.59 0.22 0.45 16 6 C -0.25 -4.26 5.86 -20.19 -0.12 -4.38 16 7 C 0.39 5.85 11.44 70.09 0.80 6.65 16 8 O -0.52 -13.88 17.15 -3.07 -0.05 -13.93 16 9 C 0.00 -0.02 9.08 22.83 0.21 0.19 16 10 C -0.21 -6.58 5.88 -20.05 -0.12 -6.70 16 11 C 0.55 22.03 7.76 86.71 0.67 22.70 16 12 O -0.57 -26.70 15.15 16.99 0.26 -26.45 16 13 N -0.72 -29.60 5.50 -466.23 -2.57 -32.17 16 14 C 0.14 6.82 5.61 86.38 0.48 7.30 16 15 C 0.02 1.21 5.09 29.85 0.15 1.37 16 16 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.01 0.34 5.46 84.65 0.46 0.80 16 19 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 20 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 24 H 0.08 0.68 7.64 -2.39 -0.02 0.66 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 0.68 7.66 -2.38 -0.02 0.66 16 27 H 0.18 0.88 6.27 -2.91 -0.02 0.86 16 28 H 0.20 -0.49 8.06 -2.91 -0.02 -0.51 16 29 H 0.17 0.38 8.06 -2.91 -0.02 0.35 16 30 H 0.13 3.65 5.97 -2.91 -0.02 3.63 16 31 H 0.40 15.09 6.50 -92.71 -0.60 14.49 16 32 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -85.01 317.96 4.36 -80.65 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.51 Total: 10.21 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.46 Total: 0.07 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -2.28 Total: -88.60 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.36 Total: -49.48 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -85.01 4.36 -80.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.301 kcal (2) G-P(sol) polarization free energy of solvation -85.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds