Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.46944 * 2 1 4 4 N 1.41603 * 113.99951 * 179.97438 * 3 2 1 5 5 C 1.46496 * 119.99817 * 269.99900 * 4 3 2 6 6 C 1.52997 * 109.47291 * 270.00056 * 5 4 3 7 7 S 1.65604 * 119.99632 * 90.00298 * 4 3 2 8 8 O 1.42102 * 104.27326 * 158.93160 * 7 4 3 9 9 O 1.42092 * 104.28113 * 31.06960 * 7 4 3 10 10 C 1.81401 * 104.44796 * 274.99573 * 7 4 3 11 11 C 1.52997 * 109.47125 * 184.29145 * 10 7 4 12 12 C 1.50697 * 115.55385 * 294.52485 * 11 10 7 13 13 H 1.08003 * 119.99948 * 114.87605 * 12 11 10 14 14 C 1.37873 * 119.99997 * 294.60634 * 12 11 10 15 15 N 1.31509 * 120.00202 * 174.38748 * 14 12 11 16 16 Si 1.86801 * 119.99829 * 354.37969 * 14 12 11 17 17 H 1.48501 * 109.46908 * 93.69595 * 16 14 12 18 18 H 1.48498 * 109.47308 * 213.69365 * 16 14 12 19 19 H 1.48499 * 109.47641 * 333.69645 * 16 14 12 20 20 C 1.53002 * 117.49573 * 80.19484 * 11 10 7 21 21 C 1.53002 * 117.49747 * 148.85122 * 11 10 7 22 22 H 1.09005 * 109.46670 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47212 * 299.99927 * 1 2 3 24 24 H 1.09002 * 109.46914 * 60.00108 * 1 2 3 25 25 H 1.08999 * 109.47212 * 240.00072 * 2 1 3 26 26 H 1.08995 * 109.47025 * 120.00265 * 2 1 3 27 27 H 1.08999 * 109.47311 * 30.00847 * 5 4 3 28 28 H 1.09006 * 109.46708 * 150.00321 * 5 4 3 29 29 H 1.09001 * 109.47153 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.46864 * 300.00170 * 6 5 4 31 31 H 1.08998 * 109.47318 * 60.00389 * 6 5 4 32 32 H 1.09003 * 109.47082 * 64.29725 * 10 7 4 33 33 H 1.09004 * 109.47376 * 304.29733 * 10 7 4 34 34 H 0.96998 * 120.00190 * 179.97438 * 15 14 12 35 35 H 1.08993 * 117.50276 * 215.00205 * 20 11 10 36 36 H 1.09005 * 117.50045 * 0.02562 * 20 11 10 37 37 H 1.09005 * 117.49852 * 359.97438 * 21 11 10 38 38 H 1.08996 * 117.49887 * 144.98038 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4592 0.0006 5 6 4.1476 1.5172 1.2696 6 6 4.2876 2.9754 1.7111 7 16 4.2439 1.5244 -1.4333 8 8 5.4887 2.1197 -1.0938 9 8 3.3445 2.1659 -2.3270 10 6 4.4758 -0.2127 -1.9015 11 6 5.3280 -0.2897 -3.1698 12 6 4.7003 0.2904 -4.4110 13 1 5.1357 1.1601 -4.8804 14 6 3.5733 -0.2926 -4.9504 15 7 2.9614 0.2754 -5.9665 16 14 2.9159 -1.8895 -4.2382 17 1 1.8751 -1.5872 -3.2230 18 1 2.3235 -2.7095 -5.3254 19 1 4.0262 -2.6413 -3.6001 20 6 6.8433 -0.1482 -3.0123 21 6 6.2317 -1.5125 -3.3406 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.6007 0.9585 2.0291 28 1 5.1377 1.0802 1.1397 29 1 4.8309 3.0186 2.6551 30 1 4.8346 3.5340 0.9516 31 1 3.2976 3.4124 1.8410 32 1 3.5048 -0.6715 -2.0879 33 1 4.9789 -0.7430 -1.0929 34 1 2.1687 -0.1350 -6.3463 35 1 7.3862 0.3645 -3.8064 36 1 7.2331 -0.0007 -2.0051 37 1 6.2194 -2.2619 -2.5491 38 1 6.3718 -1.8976 -4.3506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867905244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = -63.527014 kcal Electronic energy + Delta-G solvation = -21489.114905 eV Core-core repulsion = 18268.352682 eV Total energy + Delta-G solvation = -3220.762223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.06935 -38.85796 -38.24042 -36.97027 -35.35007 -34.34583 -32.12011 -30.37586 -29.48102 -27.61129 -24.23866 -23.58495 -23.25480 -21.29715 -20.62945 -19.17882 -18.67527 -18.12037 -17.18288 -17.03265 -16.39234 -16.18883 -15.96251 -15.56287 -15.00228 -14.91876 -14.52997 -14.20869 -14.03286 -13.86887 -13.44455 -13.22669 -13.11212 -13.05833 -12.99415 -12.70078 -12.60100 -12.50699 -12.44486 -12.17385 -11.98110 -11.85039 -11.62969 -11.13622 -10.95555 -10.74705 -10.59793 -10.15713 -8.34173 -6.45746 -0.97603 1.09606 1.22765 1.32730 1.46419 2.31392 2.51483 2.84470 2.92465 3.17685 3.28395 3.72488 3.84749 4.02547 4.09211 4.11189 4.25065 4.28742 4.32352 4.35863 4.42750 4.56397 4.59693 4.77767 4.88651 4.89811 4.95491 4.99042 5.13760 5.19032 5.20328 5.35427 5.48266 5.57940 5.94048 6.19111 6.63555 7.25219 8.82408 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.009342 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.620615 B = 2996.523240 C = 3793.925486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.007 4.007 3 O -0.133 6.133 4 N -0.871 5.871 5 C 0.097 3.903 6 C -0.176 4.176 7 S 2.609 3.391 8 O -0.956 6.956 9 O -0.978 6.978 10 C -0.575 4.575 11 C -0.039 4.039 12 C -0.516 4.516 13 H 0.029 0.971 14 C 0.027 3.973 15 N -0.937 5.937 16 Si 0.909 3.091 17 H -0.260 1.260 18 H -0.288 1.288 19 H -0.201 1.201 20 C -0.174 4.174 21 C -0.154 4.154 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.169 0.831 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -6.520 19.447 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 O -0.142 6.142 4 N -0.746 5.746 5 C -0.026 4.026 6 C -0.235 4.235 7 S 2.706 3.294 8 O -0.947 6.947 9 O -0.968 6.968 10 C -0.707 4.707 11 C -0.041 4.041 12 C -0.553 4.553 13 H 0.047 0.953 14 C -0.173 4.173 15 N -0.575 5.575 16 Si 0.731 3.269 17 H -0.185 1.185 18 H -0.215 1.215 19 H -0.122 1.122 20 C -0.211 4.211 21 C -0.193 4.193 22 H 0.121 0.879 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.187 0.813 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.282 -5.510 18.939 19.727 hybrid contribution -0.827 -0.868 -0.713 1.395 sum -0.545 -6.378 18.226 19.318 Atomic orbital electron populations 1.21784 0.90789 1.04525 1.03425 1.23582 0.97819 0.84912 1.02228 1.90667 1.00403 1.26386 1.96733 1.60674 1.01884 1.89601 1.22459 1.21983 0.96580 0.99205 0.84856 1.22262 1.02405 0.96232 1.02555 1.05310 0.73173 0.79062 0.71819 1.93515 1.43104 1.75410 1.82701 1.93535 1.65123 1.73931 1.64244 1.30329 1.09481 1.23173 1.07735 1.18742 0.89860 1.04380 0.91157 1.20491 1.11729 1.13328 1.09738 0.95291 1.25927 0.95856 1.00901 0.94617 1.70061 1.20047 1.40992 1.26362 0.86327 0.80951 0.80248 0.79411 1.18515 1.21453 1.12194 1.23138 0.93982 1.00963 1.03007 1.23171 1.02917 0.90636 1.02570 0.87903 0.89817 0.93299 0.94191 0.88345 0.86362 0.87437 0.88085 0.94176 0.92466 0.86628 0.81344 0.92322 0.90066 0.86566 0.86613 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C -0.01 -0.18 7.12 71.98 0.51 0.33 16 3 O -0.13 -4.38 10.93 -28.17 -0.31 -4.69 16 4 N -0.87 -27.91 3.22 -187.50 -0.60 -28.51 16 5 C 0.10 2.14 6.30 86.38 0.54 2.68 16 6 C -0.18 -4.01 10.20 71.98 0.73 -3.28 16 7 S 2.61 109.02 5.31 -56.49 -0.30 108.72 16 8 O -0.96 -39.95 16.29 -127.65 -2.08 -42.02 16 9 O -0.98 -53.53 17.35 -122.35 -2.12 -55.65 16 10 C -0.57 -21.27 5.60 71.98 0.40 -20.87 16 11 C -0.04 -1.70 0.79 -52.93 -0.04 -1.74 16 12 C -0.52 -29.88 8.68 25.60 0.22 -29.66 16 13 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 14 C 0.03 1.57 5.47 84.65 0.46 2.03 16 15 N -0.94 -60.44 13.96 21.44 0.30 -60.14 16 16 Si 0.91 41.10 24.97 68.60 1.71 42.81 16 17 H -0.26 -10.96 7.03 99.48 0.70 -10.26 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.20 -7.57 5.72 99.48 0.57 -7.00 16 20 C -0.17 -6.51 9.96 30.62 0.30 -6.21 16 21 C -0.15 -5.52 8.03 30.62 0.25 -5.28 16 22 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.15 6.64 -2.39 -0.02 1.13 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.11 1.97 7.65 -2.38 -0.02 1.95 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.13 7.54 -2.38 -0.02 1.12 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.12 4.37 3.64 -2.39 -0.01 4.36 16 33 H 0.17 4.15 8.09 -2.39 -0.02 4.13 16 34 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 35 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16 37 H 0.12 3.20 8.14 -2.38 -0.02 3.18 16 38 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -81.59 323.80 1.62 -79.98 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.89 Total: 23.89 kcal Atomic # 6 Polarization: -68.50 SS G_CDS: 4.13 Total: -64.37 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -0.30 Total: -88.66 kcal Atomic # 8 Polarization: -97.86 SS G_CDS: -4.51 Total: -102.37 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.71 Total: 42.81 kcal Atomic # 16 Polarization: 109.02 SS G_CDS: -0.30 Total: 108.72 kcal Total: -81.59 1.62 -79.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867905244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.449 kcal (2) G-P(sol) polarization free energy of solvation -81.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds