Wall clock time and date at job start Mon Mar 30 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.34506 * 125.79303 * 89.71532 * 15 14 12 17 17 C 1.41381 * 106.84266 * 179.88638 * 16 15 14 18 18 C 1.50697 * 126.58108 * 180.11705 * 17 16 15 19 19 F 1.39905 * 109.47331 * 180.27658 * 18 17 16 20 20 F 1.39891 * 109.47692 * 300.27967 * 18 17 16 21 21 F 1.39902 * 109.47032 * 60.28337 * 18 17 16 22 22 C 1.34511 * 106.84032 * 0.37789 * 17 16 15 23 23 O 1.34302 * 108.42342 * 359.76588 * 22 17 16 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 29 29 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 31 31 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 32 32 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 33 33 H 1.07998 * 126.58163 * 0.02562 * 16 15 14 34 34 H 1.08003 * 125.79340 * 179.75258 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5777 -0.1843 4.0551 17 6 3.8637 -0.9992 5.1745 18 6 5.1074 -0.9538 6.0242 19 9 5.0193 -1.9204 7.0319 20 9 6.2270 -1.2126 5.2265 21 9 5.2303 0.3137 6.6035 22 6 2.8151 -1.8269 5.3319 23 8 1.9120 -1.5545 4.3758 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 1.8764 -2.6150 0.3648 29 1 1.9053 -2.5654 2.1441 30 1 0.4385 -2.0742 1.2640 31 1 1.9297 1.0872 2.3124 32 1 0.5722 -0.0344 2.5726 33 1 4.2087 0.5905 3.6452 34 1 2.7161 -2.5826 6.0972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878189342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:57 Heat of formation + Delta-G solvation = -127.856765 kcal Electronic energy + Delta-G solvation = -21632.811349 eV Core-core repulsion = 17731.958887 eV Total energy + Delta-G solvation = -3900.852462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.18035 -47.74114 -47.63251 -42.78074 -37.34666 -33.71768 -33.02743 -30.94273 -28.53540 -26.77164 -26.12462 -25.23385 -23.74293 -21.56662 -20.76804 -19.46370 -18.53253 -18.38826 -17.80508 -16.35379 -16.33082 -16.18437 -15.11186 -14.56318 -14.53288 -14.39065 -14.15896 -14.11885 -13.86652 -13.83856 -13.82574 -13.15757 -12.91702 -12.56494 -12.33502 -12.04164 -11.64400 -11.17085 -11.14837 -10.84424 -10.74608 -10.59452 -10.25553 -10.09512 -9.97824 -9.01068 -8.59398 -8.44415 -7.33457 -6.06896 -4.11029 1.45235 2.27052 2.54005 2.91485 3.30236 3.34630 3.37841 3.75350 3.91891 4.37270 4.38881 4.61871 4.93688 5.03702 5.25747 5.35653 5.59729 5.75125 5.83307 5.94992 6.10918 6.27575 6.31362 6.57628 6.72523 6.81801 6.96515 7.00988 7.33502 7.61951 7.73788 7.97844 8.25741 8.45952 8.93785 9.54219 11.00180 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.003897 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.864687 B = 7183.463668 C = 7510.033218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.212 3.788 3 H 0.043 0.957 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.530 5.530 13 C 0.033 3.967 14 C 0.126 3.874 15 C 0.029 3.971 16 C -0.167 4.167 17 C -0.281 4.281 18 C 0.541 3.459 19 F -0.182 7.182 20 F -0.174 7.174 21 F -0.177 7.177 22 C 0.026 3.974 23 O -0.161 6.161 24 H 0.032 0.968 25 H 0.008 0.992 26 H 0.091 0.909 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.159 0.841 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -3.219 16.233 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.254 5.254 13 C -0.116 4.116 14 C -0.003 4.003 15 C -0.021 4.021 16 C -0.187 4.187 17 C -0.283 4.283 18 C 0.487 3.513 19 F -0.164 7.164 20 F -0.156 7.156 21 F -0.158 7.158 22 C -0.045 4.045 23 O -0.055 6.055 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.437 -3.242 16.007 16.689 hybrid contribution -0.151 -0.386 -0.562 0.698 sum 3.287 -3.627 15.445 16.202 Atomic orbital electron populations 1.22439 1.00623 0.99604 1.00748 1.19360 0.89908 0.94682 0.85430 0.93922 1.21038 1.30894 1.12662 0.89491 0.91889 1.24914 0.95123 0.95099 0.99012 1.69865 1.36820 1.22964 1.23656 0.86556 0.79280 0.79583 0.81974 1.21354 1.20175 1.20347 1.62469 1.59566 1.02273 1.01118 1.22273 0.97387 0.90723 1.01171 1.20654 0.96478 0.97629 0.85497 1.22809 0.95060 0.89597 0.94631 1.21160 0.97218 1.03769 0.96532 1.20430 0.97529 1.06771 1.03610 1.17358 0.83020 0.73418 0.77504 1.93159 1.96438 1.64120 1.62668 1.93223 1.54904 1.93780 1.73647 1.93206 1.96424 1.40848 1.85360 1.23793 0.87494 0.99864 0.93307 1.84157 1.42281 1.44578 1.34443 0.94882 0.97288 0.89081 0.92853 0.90477 0.94024 0.95941 0.87922 0.93300 0.82341 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.28 37.16 0.31 -3.69 16 2 C 0.21 5.04 2.34 -68.87 -0.16 4.88 16 3 H 0.04 1.10 8.03 -51.92 -0.42 0.69 16 4 C -0.50 -13.25 7.94 -34.44 -0.27 -13.52 16 5 H 0.06 1.67 6.75 -52.49 -0.35 1.32 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.53 -10.84 4.73 -237.73 -1.13 -11.96 16 13 C 0.03 0.63 8.72 60.06 0.52 1.16 16 14 C 0.13 2.12 4.94 -4.98 -0.02 2.10 16 15 C 0.03 0.45 5.89 -35.63 -0.21 0.24 16 16 C -0.17 -2.42 10.77 -39.71 -0.43 -2.85 16 17 C -0.28 -3.65 5.59 -104.75 -0.59 -4.23 16 18 C 0.54 6.64 3.53 36.00 0.13 6.76 16 19 F -0.18 -2.03 16.79 2.25 0.04 -2.00 16 20 F -0.17 -2.33 17.30 2.25 0.04 -2.29 16 21 F -0.18 -2.22 17.30 2.25 0.04 -2.18 16 22 C 0.03 0.30 11.52 29.41 0.34 0.64 16 23 O -0.16 -2.27 9.93 5.68 0.06 -2.21 16 24 H 0.03 0.74 6.38 -51.93 -0.33 0.41 16 25 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 26 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.08 1.59 6.53 -51.93 -0.34 1.25 16 29 H 0.04 0.73 6.60 -51.93 -0.34 0.38 16 30 H 0.02 0.42 6.28 -51.93 -0.33 0.10 16 31 H 0.10 1.64 8.00 -51.93 -0.42 1.22 16 32 H 0.05 0.81 6.94 -51.93 -0.36 0.45 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.21 1.58 7.95 -52.48 -0.42 1.16 16 LS Contribution 295.70 15.07 4.46 4.46 Total: -1.00 -27.57 295.70 -4.90 -32.47 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.53 Total: -1.11 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.48 Total: -7.02 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.50 Total: -35.96 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: 0.06 Total: -2.21 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.12 Total: -6.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.57 -4.90 -32.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.388 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds