Wall clock time and date at job start Mon Mar 30 2020 01:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.34506 * 125.79303 * 89.71532 * 15 14 12 17 17 C 1.41381 * 106.84266 * 179.88638 * 16 15 14 18 18 C 1.50697 * 126.58108 * 180.11705 * 17 16 15 19 19 F 1.39905 * 109.47331 * 180.27658 * 18 17 16 20 20 F 1.39891 * 109.47692 * 300.27967 * 18 17 16 21 21 F 1.39902 * 109.47032 * 60.28337 * 18 17 16 22 22 C 1.34511 * 106.84032 * 0.37789 * 17 16 15 23 23 O 1.34302 * 108.42342 * 359.76588 * 22 17 16 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 29 29 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 30 30 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 31 31 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 32 32 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 33 33 H 1.07998 * 126.58163 * 0.02562 * 16 15 14 34 34 H 1.08003 * 125.79340 * 179.75258 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5777 -0.1843 4.0551 17 6 3.8637 -0.9992 5.1745 18 6 5.1074 -0.9538 6.0242 19 9 5.0193 -1.9204 7.0319 20 9 6.2270 -1.2126 5.2265 21 9 5.2303 0.3137 6.6035 22 6 2.8151 -1.8269 5.3319 23 8 1.9120 -1.5545 4.3758 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 1.8764 -2.6150 0.3648 29 1 1.9053 -2.5654 2.1441 30 1 0.4385 -2.0742 1.2640 31 1 1.9297 1.0872 2.3124 32 1 0.5722 -0.0344 2.5726 33 1 4.2087 0.5905 3.6452 34 1 2.7161 -2.5826 6.0972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878189342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:57 Heat of formation + Delta-G solvation = -143.900764 kcal Electronic energy + Delta-G solvation = -21633.507069 eV Core-core repulsion = 17731.958887 eV Total energy + Delta-G solvation = -3901.548182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.14204 -48.67636 -48.62634 -43.84457 -38.99308 -34.94718 -34.71874 -32.36169 -30.22103 -28.15541 -27.18473 -27.12927 -25.29864 -22.64703 -21.96328 -21.09448 -19.50518 -19.37341 -18.89371 -18.14374 -17.53668 -17.35981 -16.80763 -15.95834 -15.67601 -15.51486 -15.47733 -15.41419 -15.07806 -14.81006 -14.79921 -14.62551 -14.34594 -13.93887 -13.59388 -13.42417 -13.16483 -12.90073 -12.80543 -12.63091 -12.50347 -12.27983 -12.00654 -11.82268 -11.29481 -10.94027 -10.47702 -9.71908 -8.94505 -8.09866 -6.20163 0.45527 1.14792 1.45218 1.46068 1.53467 1.55980 1.89004 2.44755 2.76830 2.94351 3.20001 3.41267 3.45936 3.68478 3.89163 4.18959 4.40810 4.47940 4.57719 4.68166 4.74978 4.79186 4.90603 4.92610 5.12417 5.15354 5.17550 5.53094 5.70675 5.78714 5.89750 6.15959 6.42097 6.64630 6.91288 7.48703 8.95824 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.003897 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.864687 B = 7183.463668 C = 7510.033218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.216 3.784 3 H 0.016 0.984 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.272 1.272 12 N -0.542 5.542 13 C 0.041 3.959 14 C 0.130 3.870 15 C 0.008 3.992 16 C -0.168 4.168 17 C -0.300 4.300 18 C 0.548 3.452 19 F -0.173 7.173 20 F -0.182 7.182 21 F -0.180 7.180 22 C 0.053 3.947 23 O -0.168 6.168 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.159 0.841 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -4.389 17.570 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.110 3.890 3 H 0.034 0.966 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.198 1.198 12 N -0.266 5.266 13 C -0.107 4.107 14 C 0.002 3.998 15 C -0.042 4.042 16 C -0.187 4.187 17 C -0.302 4.302 18 C 0.494 3.506 19 F -0.154 7.154 20 F -0.164 7.164 21 F -0.161 7.161 22 C -0.017 4.017 23 O -0.062 6.062 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.176 0.824 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.639 -4.415 17.358 18.277 hybrid contribution -0.178 -0.039 -0.849 0.869 sum 3.461 -4.455 16.509 17.446 Atomic orbital electron populations 1.22235 0.99972 0.99400 1.00462 1.19101 0.90259 0.93284 0.86395 0.96580 1.21323 1.30764 1.12562 0.90858 0.92612 1.25617 0.95370 0.95770 1.01620 1.69986 1.37686 1.24028 1.24093 0.85646 0.78647 0.78712 0.78817 1.21052 1.20026 1.19761 1.62313 1.59974 1.02844 1.01425 1.22183 0.97353 0.90006 1.01172 1.20552 0.96970 0.97607 0.84675 1.22352 0.95493 0.91169 0.95183 1.21300 0.96859 1.03700 0.96885 1.20510 0.98526 1.07434 1.03776 1.17202 0.82469 0.73470 0.77472 1.93177 1.96361 1.63689 1.62185 1.93210 1.55362 1.93835 1.73980 1.93203 1.96406 1.41135 1.85368 1.24642 0.85822 0.98949 0.92255 1.84149 1.42922 1.44232 1.34890 0.94895 0.95007 0.91822 0.92940 0.92331 0.92081 0.95845 0.87670 0.92876 0.82371 0.72880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.40 8.28 71.98 0.60 -6.80 16 2 C 0.22 10.42 2.34 44.17 0.10 10.52 16 3 H 0.02 0.86 8.03 -2.38 -0.02 0.84 16 4 C -0.52 -27.55 7.94 25.60 0.20 -27.34 16 5 H 0.06 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.25 11.32 21.45 0.24 -51.01 16 8 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 9 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 N -0.54 -21.99 4.73 -906.03 -4.29 -26.28 16 13 C 0.04 1.55 8.72 127.69 1.11 2.66 16 14 C 0.13 4.28 4.94 85.56 0.42 4.71 16 15 C 0.01 0.22 5.89 24.83 0.15 0.37 16 16 C -0.17 -4.63 10.77 22.19 0.24 -4.39 16 17 C -0.30 -7.07 5.59 -19.94 -0.11 -7.18 16 18 C 0.55 12.25 3.53 71.24 0.25 12.50 16 19 F -0.17 -3.35 16.79 44.97 0.75 -2.59 16 20 F -0.18 -4.60 17.30 44.97 0.78 -3.82 16 21 F -0.18 -4.21 17.30 44.97 0.78 -3.43 16 22 C 0.05 1.05 11.52 66.97 0.77 1.82 16 23 O -0.17 -4.29 9.93 -2.57 -0.03 -4.32 16 24 H 0.03 1.46 6.38 -2.39 -0.02 1.45 16 25 H 0.03 1.26 6.75 -2.39 -0.02 1.25 16 26 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 27 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.06 2.39 6.53 -2.39 -0.02 2.38 16 29 H 0.06 2.03 6.60 -2.39 -0.02 2.02 16 30 H 0.02 0.86 6.28 -2.39 -0.01 0.85 16 31 H 0.11 3.35 8.00 -2.38 -0.02 3.33 16 32 H 0.05 1.70 6.94 -2.39 -0.02 1.68 16 33 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.26 2.53 7.95 -2.91 -0.02 2.50 16 Total: -1.00 -58.53 295.70 5.59 -52.94 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.14 Total: 5.46 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.18 Total: -11.88 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -4.05 Total: -77.29 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.03 Total: -4.32 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 2.31 Total: -9.84 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -58.53 5.59 -52.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.961 kcal (2) G-P(sol) polarization free energy of solvation -58.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds