Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 C 1.34517 * 125.78904 * 89.71469 * 15 14 12 17 17 C 1.41380 * 106.84089 * 179.88784 * 16 15 14 18 18 C 1.50701 * 126.58080 * 180.11795 * 17 16 15 19 19 F 1.39900 * 109.47145 * 180.27672 * 18 17 16 20 20 F 1.39897 * 109.47260 * 300.28046 * 18 17 16 21 21 F 1.39907 * 109.46796 * 60.28035 * 18 17 16 22 22 C 1.34511 * 106.84204 * 0.37491 * 17 16 15 23 23 O 1.34305 * 125.79058 * 270.02109 * 15 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 29 29 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 30 30 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 31 31 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 32 32 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 33 33 H 1.08003 * 126.57750 * 0.02562 * 16 15 14 34 34 H 1.07997 * 125.79605 * 179.75040 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 6 1.9865 -1.4618 -4.4006 17 6 2.9941 -1.7413 -5.3521 18 6 2.9107 -2.7333 -6.4835 19 9 4.1121 -2.7251 -7.2004 20 9 2.6854 -4.0133 -5.9657 21 9 1.8573 -2.3824 -7.3347 22 6 4.0437 -0.9559 -5.0505 23 8 3.7251 -0.2160 -3.9758 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 0.3491 -1.9549 -1.3693 29 1 1.8134 -2.5258 -2.2045 30 1 1.7059 -2.6221 -0.4301 31 1 0.6815 0.1053 -2.6087 32 1 2.1026 1.1189 -2.2604 33 1 1.0092 -1.9181 -4.3451 34 1 4.9833 -0.9255 -5.5820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878189343.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -143.241254 kcal Electronic energy + Delta-G solvation = -21666.975360 eV Core-core repulsion = 17765.455777 eV Total energy + Delta-G solvation = -3901.519583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.14432 -48.67984 -48.62799 -43.84560 -39.01966 -35.04104 -34.65314 -32.37547 -30.06383 -28.34466 -27.28123 -27.04286 -25.20122 -22.69389 -21.93303 -21.10958 -19.50898 -19.36959 -18.89725 -18.13795 -17.48797 -17.36294 -16.79776 -15.99372 -15.71658 -15.52787 -15.50235 -15.34787 -15.08079 -14.81464 -14.80115 -14.57125 -14.38875 -13.97636 -13.86224 -13.27990 -13.11083 -12.93229 -12.76949 -12.59326 -12.50002 -12.26791 -12.03750 -11.75636 -11.28698 -10.94905 -10.47406 -9.73469 -8.93280 -8.09582 -6.20050 0.46341 1.10947 1.45087 1.45782 1.53416 1.56085 1.91249 2.44708 2.76314 2.93487 3.19935 3.40555 3.44401 3.70050 3.90831 4.19272 4.31957 4.45283 4.58809 4.67611 4.73238 4.82889 4.87375 4.93257 5.11221 5.15453 5.18841 5.51807 5.70888 5.79165 5.90414 6.18984 6.43911 6.64950 6.91311 7.48892 8.95899 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.034880 B = 0.003785 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.556587 B = 7395.162100 C = 7511.359731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.217 3.783 3 H 0.013 0.987 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.545 5.545 13 C 0.035 3.965 14 C 0.126 3.874 15 C 0.013 3.987 16 C -0.176 4.176 17 C -0.299 4.299 18 C 0.549 3.451 19 F -0.174 7.174 20 F -0.181 7.181 21 F -0.179 7.179 22 C 0.051 3.949 23 O -0.166 6.166 24 H 0.036 0.964 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -4.601 -17.700 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.110 3.890 3 H 0.031 0.969 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.269 5.269 13 C -0.113 4.113 14 C -0.002 4.002 15 C -0.037 4.037 16 C -0.195 4.195 17 C -0.302 4.302 18 C 0.495 3.505 19 F -0.155 7.155 20 F -0.163 7.163 21 F -0.161 7.161 22 C -0.019 4.019 23 O -0.060 6.060 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.813 -4.340 -17.377 18.312 hybrid contribution -0.814 -0.484 0.682 1.167 sum 2.999 -4.824 -16.695 17.635 Atomic orbital electron populations 1.22233 0.99770 0.99600 1.00434 1.19103 0.90403 0.93022 0.86462 0.96936 1.21308 1.30695 1.12497 0.90883 0.92802 1.25615 0.95394 0.95784 1.01616 1.69983 1.37717 1.24057 1.24094 0.85643 0.78640 0.78714 0.78803 1.20034 1.21012 1.19766 1.62213 1.59732 1.03376 1.01551 1.22275 0.96928 0.90626 1.01462 1.20516 0.96667 0.97326 0.85693 1.22411 0.83148 0.99714 0.98409 1.21327 1.01684 1.00478 0.96057 1.20483 0.99899 1.06966 1.02802 1.17182 0.73504 0.79122 0.80730 1.93178 1.45968 1.96563 1.79786 1.93209 1.94475 1.41749 1.86833 1.93206 1.58230 1.91902 1.72729 1.24658 1.00138 0.90040 0.87039 1.84168 1.30102 1.53193 1.38488 0.94528 0.94995 0.91903 0.92938 0.95324 0.91464 0.92660 0.90584 0.89675 0.81860 0.73111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.34 8.22 71.98 0.59 -6.75 16 2 C 0.22 10.49 2.31 44.17 0.10 10.60 16 3 H 0.01 0.68 7.93 -2.39 -0.02 0.66 16 4 C -0.52 -27.68 7.97 25.60 0.20 -27.47 16 5 H 0.05 2.92 7.10 -2.91 -0.02 2.90 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.45 11.32 21.44 0.24 -51.21 16 8 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 N -0.54 -22.17 4.69 -906.04 -4.25 -26.42 16 13 C 0.04 1.29 8.58 127.69 1.10 2.39 16 14 C 0.13 4.16 5.07 85.56 0.43 4.59 16 15 C 0.01 0.38 6.24 24.83 0.15 0.54 16 16 C -0.18 -4.54 9.24 22.19 0.20 -4.34 16 17 C -0.30 -6.86 5.59 -19.94 -0.11 -6.97 16 18 C 0.55 11.78 3.53 71.24 0.25 12.03 16 19 F -0.17 -3.32 16.79 44.97 0.75 -2.57 16 20 F -0.18 -4.29 17.30 44.97 0.78 -3.51 16 21 F -0.18 -4.01 17.30 44.97 0.78 -3.23 16 22 C 0.05 1.05 11.52 66.97 0.77 1.82 16 23 O -0.17 -4.56 10.65 -2.55 -0.03 -4.59 16 24 H 0.04 1.61 6.33 -2.39 -0.02 1.59 16 25 H 0.03 1.25 6.91 -2.39 -0.02 1.23 16 26 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 27 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 28 H 0.03 1.01 6.21 -2.39 -0.01 0.99 16 29 H 0.07 2.17 6.08 -2.38 -0.01 2.16 16 30 H 0.05 2.24 6.86 -2.39 -0.02 2.22 16 31 H 0.08 2.31 7.06 -2.39 -0.02 2.29 16 32 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 33 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 34 H 0.25 2.80 7.95 -2.91 -0.02 2.77 16 Total: -1.00 -59.01 295.26 5.58 -53.43 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.14 Total: 5.33 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.15 Total: -12.32 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -4.01 Total: -77.63 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.03 Total: -4.59 kcal Atomic # 9 Polarization: -11.62 SS G_CDS: 2.31 Total: -9.31 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -59.01 5.58 -53.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189343.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.814 kcal (2) G-P(sol) polarization free energy of solvation -59.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds