Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46955 * 2 1 4 4 O 1.42898 * 109.47398 * 119.99857 * 2 1 3 5 5 C 1.53002 * 109.47175 * 240.00021 * 2 1 3 6 6 N 1.46498 * 109.47198 * 173.93260 * 5 2 1 7 7 C 1.46502 * 119.99968 * 263.88186 * 6 5 2 8 8 C 1.53000 * 109.46948 * 83.86343 * 7 6 5 9 9 C 1.50696 * 115.54839 * 293.46765 * 8 7 6 10 10 H 1.08008 * 120.00069 * 144.39602 * 9 8 7 11 11 C 1.37879 * 120.00219 * 324.39382 * 9 8 7 12 12 N 1.31516 * 119.99928 * 347.08223 * 11 9 8 13 13 Si 1.86804 * 120.00090 * 167.08411 * 11 9 8 14 14 H 1.48504 * 109.46986 * 90.00214 * 13 11 9 15 15 H 1.48500 * 109.46757 * 209.99987 * 13 11 9 16 16 H 1.48498 * 109.46949 * 330.00299 * 13 11 9 17 17 C 1.53002 * 117.49709 * 147.79794 * 8 7 6 18 18 C 1.53004 * 117.49920 * 79.13657 * 8 7 6 19 19 S 1.65599 * 119.99930 * 83.88194 * 6 5 2 20 20 C 1.81401 * 104.44801 * 96.05724 * 19 6 5 21 21 O 1.42104 * 104.27829 * 212.12622 * 19 6 5 22 22 O 1.42105 * 104.27952 * 339.98636 * 19 6 5 23 23 H 1.09001 * 109.47460 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47426 * 60.00135 * 1 2 3 25 25 H 1.09003 * 109.47541 * 300.00186 * 1 2 3 26 26 H 0.96706 * 113.99805 * 56.26885 * 4 2 1 27 27 H 1.08996 * 109.47119 * 293.93433 * 5 2 1 28 28 H 1.09003 * 109.47070 * 53.93152 * 5 2 1 29 29 H 1.09005 * 109.46804 * 203.85886 * 7 6 5 30 30 H 1.08997 * 109.47222 * 323.85982 * 7 6 5 31 31 H 0.96998 * 120.00039 * 185.05876 * 12 11 9 32 32 H 1.08998 * 117.49846 * 359.97438 * 17 8 7 33 33 H 1.09001 * 117.49333 * 145.02260 * 17 8 7 34 34 H 1.08998 * 117.50011 * 214.97492 * 18 8 7 35 35 H 1.08995 * 117.49819 * 359.97438 * 18 8 7 36 36 H 1.08996 * 109.46956 * 51.62725 * 20 19 6 37 37 H 1.09009 * 109.47006 * 171.62198 * 20 19 6 38 38 H 1.09002 * 109.47209 * 291.62213 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 7 3.4976 -0.5961 -1.3245 7 6 4.1010 0.4589 -2.1425 8 6 4.1528 1.7601 -1.3393 9 6 2.8166 2.3731 -1.0081 10 1 2.6725 2.8763 -0.0633 11 6 1.7778 2.2915 -1.9111 12 7 2.0107 1.9127 -3.1488 13 14 0.0397 2.7191 -1.3765 14 1 -0.2059 4.1661 -1.6027 15 1 -0.9317 1.9225 -2.1683 16 1 -0.1248 2.4086 0.0663 17 6 5.3189 2.7125 -1.6117 18 6 5.2738 1.9101 -0.3088 19 16 4.4633 -1.6472 -0.4849 20 6 4.8994 -2.9262 -1.6951 21 8 5.6060 -0.8754 -0.1416 22 8 3.6108 -2.1807 0.5191 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 0.5139 0.8900 26 1 1.6749 -1.5771 1.2622 27 1 1.7680 -1.7754 -1.1966 28 1 1.5906 -0.2740 -2.1359 29 1 5.1122 0.1659 -2.4251 30 1 3.5020 0.6098 -3.0405 31 1 1.2945 1.9256 -3.8029 32 1 6.0494 2.4118 -2.3628 33 1 5.1196 3.7824 -1.5509 34 1 5.0449 2.4526 0.6085 35 1 5.9740 1.0817 -0.2027 36 1 5.2918 -2.4551 -2.5962 37 1 5.6569 -3.5852 -1.2704 38 1 4.0118 -3.5071 -1.9458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902716442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = -69.059150 kcal Electronic energy + Delta-G solvation = -22539.053260 eV Core-core repulsion = 19318.051145 eV Total energy + Delta-G solvation = -3221.002114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.86670 -36.77426 -35.73517 -35.15502 -33.61548 -32.38829 -30.29857 -29.12870 -26.60965 -25.83872 -23.80735 -20.98532 -20.67533 -19.25427 -18.06348 -17.17815 -16.33832 -15.97605 -15.48742 -15.22346 -14.83271 -14.23953 -13.83497 -13.54626 -13.46946 -13.02008 -12.88979 -12.80500 -12.09487 -12.00705 -11.78848 -11.58657 -11.36142 -11.32574 -11.10167 -10.76257 -10.61058 -10.41981 -10.30551 -10.20987 -9.85546 -9.78193 -9.65501 -9.10388 -9.01191 -8.57696 -8.03014 -7.74655 -6.16250 -4.12240 0.86694 3.15189 3.25101 3.31944 3.38992 4.22874 4.57337 4.63547 4.88028 5.02025 5.27024 5.36626 5.63282 5.69616 5.77926 5.84438 5.90957 6.13028 6.15506 6.33231 6.36862 6.55558 6.64280 6.70148 6.72720 6.93649 7.01827 7.17458 7.31649 7.52688 7.57690 7.65926 7.68609 7.95482 8.42827 8.77931 8.80072 9.35751 10.81266 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.010969 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.519911 B = 2551.934988 C = 3273.288235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.036 3.964 3 H 0.171 0.829 4 O -0.546 6.546 5 C 0.115 3.885 6 N -0.964 5.964 7 C 0.149 3.851 8 C 0.031 3.969 9 C -0.468 4.468 10 H 0.064 0.936 11 C 0.072 3.928 12 N -0.877 5.877 13 Si 0.876 3.124 14 H -0.290 1.290 15 H -0.283 1.283 16 H -0.258 1.258 17 C -0.202 4.202 18 C -0.207 4.207 19 S 2.603 3.397 20 C -0.691 4.691 21 O -0.950 6.950 22 O -0.949 6.949 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.359 0.641 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.131 0.869 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -8.467 -0.549 8.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.187 0.813 4 O -0.351 6.351 5 C -0.011 4.011 6 N -0.801 5.801 7 C 0.025 3.975 8 C 0.029 3.971 9 C -0.505 4.505 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.515 5.515 13 Si 0.705 3.295 14 H -0.218 1.218 15 H -0.210 1.210 16 H -0.182 1.182 17 C -0.241 4.241 18 C -0.245 4.245 19 S 2.694 3.306 20 C -0.837 4.837 21 O -0.940 6.940 22 O -0.940 6.940 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.206 0.794 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.148 0.852 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.815 -7.995 0.237 8.040 hybrid contribution -1.345 -0.524 -0.769 1.635 sum -0.530 -8.518 -0.532 8.551 Atomic orbital electron populations 1.22747 0.99127 1.00925 1.01759 1.23868 0.90964 1.02839 0.84634 0.81326 1.86687 1.74136 1.30019 1.44275 1.21795 0.80260 0.98013 1.01050 1.56940 1.14696 1.42664 1.65799 1.21320 0.95342 0.84787 0.96075 1.19291 0.88777 0.92820 0.96206 1.20450 0.93634 1.33868 1.02508 0.91824 1.24982 0.98620 0.94525 0.94867 1.69675 1.32632 1.47342 1.01865 0.87150 0.84665 0.77607 0.80113 1.21770 1.20984 1.18250 1.22933 1.04576 0.97648 0.98984 1.23266 1.05697 1.03126 0.92412 1.05078 0.74714 0.75372 0.75431 1.30819 1.11360 1.20788 1.20778 1.93531 1.52877 1.66015 1.81615 1.93488 1.65393 1.81112 1.53966 0.93480 0.92591 0.92118 0.79366 0.93367 0.88477 0.94440 0.85155 0.92593 0.91949 0.90831 0.91539 0.87700 0.85984 0.86648 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 7.56 37.15 0.28 -3.18 16 2 C 0.04 0.75 2.80 -26.73 -0.07 0.67 16 3 H 0.17 4.02 2.94 -51.93 -0.15 3.87 16 4 O -0.55 -11.49 10.73 -59.35 -0.64 -12.13 16 5 C 0.12 2.20 4.34 -4.04 -0.02 2.18 16 6 N -0.96 -18.62 2.69 -114.38 -0.31 -18.93 16 7 C 0.15 3.17 4.82 -4.04 -0.02 3.15 16 8 C 0.03 0.74 1.98 -155.66 -0.31 0.43 16 9 C -0.47 -11.78 5.70 -34.44 -0.20 -11.97 16 10 H 0.06 1.68 7.77 -52.48 -0.41 1.27 16 11 C 0.07 1.73 3.09 -17.82 -0.06 1.68 16 12 N -0.88 -21.21 9.77 55.43 0.54 -20.67 16 13 Si 0.88 19.34 23.98 -169.99 -4.08 15.26 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.08 6.90 56.52 0.39 -5.69 16 16 H -0.26 -5.59 5.78 56.52 0.33 -5.26 16 17 C -0.20 -4.61 9.92 -26.69 -0.26 -4.87 16 18 C -0.21 -4.85 9.41 -26.69 -0.25 -5.10 16 19 S 2.60 45.18 5.87 -107.50 -0.63 44.55 16 20 C -0.69 -8.56 10.99 101.05 1.11 -7.45 16 21 O -0.95 -19.36 13.95 -57.54 -0.80 -20.16 16 22 O -0.95 -17.87 13.29 -67.12 -0.89 -18.76 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.07 4.12 -51.93 -0.21 0.85 16 25 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16 26 H 0.36 6.54 7.92 45.56 0.36 6.90 16 27 H 0.05 0.77 7.86 -51.93 -0.41 0.36 16 28 H 0.10 1.95 6.14 -51.93 -0.32 1.63 16 29 H 0.04 0.73 7.68 -51.93 -0.40 0.33 16 30 H 0.13 2.93 5.23 -51.93 -0.27 2.66 16 31 H 0.26 6.13 8.32 -40.82 -0.34 5.79 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.10 2.45 5.35 -51.93 -0.28 2.18 16 36 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.11 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.12 1.29 8.14 -51.92 -0.42 0.86 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -28.42 288.61 -6.92 -35.33 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -4.66 Total: 15.61 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 0.20 Total: -24.45 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.23 Total: -39.59 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.33 Total: -51.05 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.08 Total: 15.26 kcal Atomic # 16 Polarization: 45.18 SS G_CDS: -0.63 Total: 44.55 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.42 -6.92 -35.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902716442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.725 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds