Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46955 * 2 1 4 4 O 1.42898 * 109.47398 * 119.99857 * 2 1 3 5 5 C 1.53002 * 109.47175 * 240.00021 * 2 1 3 6 6 N 1.46498 * 109.47198 * 173.93260 * 5 2 1 7 7 C 1.46502 * 119.99968 * 263.88186 * 6 5 2 8 8 C 1.53000 * 109.46948 * 83.86343 * 7 6 5 9 9 C 1.50696 * 115.54839 * 293.46765 * 8 7 6 10 10 H 1.08008 * 120.00069 * 144.39602 * 9 8 7 11 11 C 1.37879 * 120.00219 * 324.39382 * 9 8 7 12 12 N 1.31516 * 119.99928 * 347.08223 * 11 9 8 13 13 Si 1.86804 * 120.00090 * 167.08411 * 11 9 8 14 14 H 1.48504 * 109.46986 * 90.00214 * 13 11 9 15 15 H 1.48500 * 109.46757 * 209.99987 * 13 11 9 16 16 H 1.48498 * 109.46949 * 330.00299 * 13 11 9 17 17 C 1.53002 * 117.49709 * 147.79794 * 8 7 6 18 18 C 1.53004 * 117.49920 * 79.13657 * 8 7 6 19 19 S 1.65599 * 119.99930 * 83.88194 * 6 5 2 20 20 C 1.81401 * 104.44801 * 96.05724 * 19 6 5 21 21 O 1.42104 * 104.27829 * 212.12622 * 19 6 5 22 22 O 1.42105 * 104.27952 * 339.98636 * 19 6 5 23 23 H 1.09001 * 109.47460 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47426 * 60.00135 * 1 2 3 25 25 H 1.09003 * 109.47541 * 300.00186 * 1 2 3 26 26 H 0.96706 * 113.99805 * 56.26885 * 4 2 1 27 27 H 1.08996 * 109.47119 * 293.93433 * 5 2 1 28 28 H 1.09003 * 109.47070 * 53.93152 * 5 2 1 29 29 H 1.09005 * 109.46804 * 203.85886 * 7 6 5 30 30 H 1.08997 * 109.47222 * 323.85982 * 7 6 5 31 31 H 0.96998 * 120.00039 * 185.05876 * 12 11 9 32 32 H 1.08998 * 117.49846 * 359.97438 * 17 8 7 33 33 H 1.09001 * 117.49333 * 145.02260 * 17 8 7 34 34 H 1.08998 * 117.50011 * 214.97492 * 18 8 7 35 35 H 1.08995 * 117.49819 * 359.97438 * 18 8 7 36 36 H 1.08996 * 109.46956 * 51.62725 * 20 19 6 37 37 H 1.09009 * 109.47006 * 171.62198 * 20 19 6 38 38 H 1.09002 * 109.47209 * 291.62213 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 7 3.4976 -0.5961 -1.3245 7 6 4.1010 0.4589 -2.1425 8 6 4.1528 1.7601 -1.3393 9 6 2.8166 2.3731 -1.0081 10 1 2.6725 2.8763 -0.0633 11 6 1.7778 2.2915 -1.9111 12 7 2.0107 1.9127 -3.1488 13 14 0.0397 2.7191 -1.3765 14 1 -0.2059 4.1661 -1.6027 15 1 -0.9317 1.9225 -2.1683 16 1 -0.1248 2.4086 0.0663 17 6 5.3189 2.7125 -1.6117 18 6 5.2738 1.9101 -0.3088 19 16 4.4633 -1.6472 -0.4849 20 6 4.8994 -2.9262 -1.6951 21 8 5.6060 -0.8754 -0.1416 22 8 3.6108 -2.1807 0.5191 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 0.5139 0.8900 26 1 1.6749 -1.5771 1.2622 27 1 1.7680 -1.7754 -1.1966 28 1 1.5906 -0.2740 -2.1359 29 1 5.1122 0.1659 -2.4251 30 1 3.5020 0.6098 -3.0405 31 1 1.2945 1.9256 -3.8029 32 1 6.0494 2.4118 -2.3628 33 1 5.1196 3.7824 -1.5509 34 1 5.0449 2.4526 0.6085 35 1 5.9740 1.0817 -0.2027 36 1 5.2918 -2.4551 -2.5962 37 1 5.6569 -3.5852 -1.2704 38 1 4.0118 -3.5071 -1.9458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902716442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = -90.455875 kcal Electronic energy + Delta-G solvation = -22539.981091 eV Core-core repulsion = 19318.051145 eV Total energy + Delta-G solvation = -3221.929946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50013 -38.30997 -37.31063 -36.56280 -35.19684 -34.24403 -31.85240 -30.16898 -28.22877 -27.65034 -25.35742 -22.80358 -22.25741 -21.01937 -19.53640 -18.65213 -18.04137 -17.43935 -16.97067 -16.94453 -16.29726 -15.87337 -15.50140 -15.15371 -14.99646 -14.54696 -14.02314 -13.88795 -13.72988 -13.50499 -13.42581 -13.24379 -12.97100 -12.82268 -12.76159 -12.27168 -12.15930 -12.03698 -11.98145 -11.84462 -11.54407 -11.36044 -11.33798 -10.83712 -10.72302 -10.39597 -9.84152 -9.30039 -8.02234 -6.02615 -0.42081 1.36102 1.44614 1.53579 2.00894 2.40846 3.01498 3.32644 3.41856 3.75834 3.87452 4.07808 4.22071 4.23604 4.29985 4.43802 4.49984 4.63387 4.66679 4.85456 4.86959 4.89865 4.94925 5.10130 5.15663 5.17799 5.33161 5.43468 5.49809 5.72721 5.79517 5.92411 6.09577 6.21790 6.55041 6.85655 7.33195 7.46356 8.93823 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.010969 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.519911 B = 2551.934988 C = 3273.288235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.029 3.971 3 H 0.138 0.862 4 O -0.561 6.561 5 C 0.115 3.885 6 N -0.972 5.972 7 C 0.156 3.844 8 C 0.017 3.983 9 C -0.486 4.486 10 H 0.036 0.964 11 C 0.060 3.940 12 N -0.881 5.881 13 Si 0.909 3.091 14 H -0.304 1.304 15 H -0.268 1.268 16 H -0.258 1.258 17 C -0.200 4.200 18 C -0.209 4.209 19 S 2.597 3.403 20 C -0.661 4.661 21 O -0.991 6.991 22 O -0.971 6.971 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.371 0.629 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.267 0.733 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 -10.872 -1.787 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 H 0.154 0.846 4 O -0.368 6.368 5 C -0.012 4.012 6 N -0.807 5.807 7 C 0.031 3.969 8 C 0.015 3.985 9 C -0.523 4.523 10 H 0.054 0.946 11 C -0.141 4.141 12 N -0.519 5.519 13 Si 0.738 3.262 14 H -0.233 1.233 15 H -0.193 1.193 16 H -0.183 1.183 17 C -0.239 4.239 18 C -0.247 4.247 19 S 2.694 3.306 20 C -0.813 4.813 21 O -0.981 6.981 22 O -0.962 6.962 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.220 0.780 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.528 -10.367 -0.968 10.426 hybrid contribution -1.223 0.163 -0.354 1.284 sum -0.695 -10.204 -1.322 10.313 Atomic orbital electron populations 1.22664 0.97530 1.02886 1.01061 1.23692 0.92376 1.01520 0.85451 0.84562 1.86659 1.74596 1.30991 1.44598 1.21781 0.80270 0.99686 0.99428 1.56922 1.14960 1.43278 1.65551 1.21101 0.96211 0.84307 0.95305 1.19538 0.88146 0.94282 0.96525 1.20363 0.95121 1.34945 1.01844 0.94586 1.25177 0.99961 0.94235 0.94759 1.69728 1.33233 1.47016 1.01951 0.86663 0.82775 0.76622 0.80153 1.23258 1.19308 1.18264 1.22960 1.04900 0.97087 0.98936 1.23172 1.06220 1.03286 0.92013 1.05008 0.73643 0.75889 0.76055 1.30480 1.13475 1.18533 1.18791 1.93472 1.53612 1.68081 1.82956 1.93453 1.65755 1.81172 1.55789 0.90209 0.93280 0.92701 0.78026 0.89942 0.89573 0.92743 0.86205 0.92220 0.90062 0.91778 0.93218 0.87472 0.84385 0.83902 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.46 7.56 71.98 0.54 -5.91 16 2 C 0.03 1.18 2.80 30.59 0.09 1.26 16 3 H 0.14 6.60 2.94 -2.39 -0.01 6.60 16 4 O -0.56 -23.30 10.73 -125.91 -1.35 -24.65 16 5 C 0.11 4.17 4.34 86.38 0.38 4.54 16 6 N -0.97 -36.00 2.69 -515.78 -1.39 -37.39 16 7 C 0.16 6.47 4.82 86.38 0.42 6.89 16 8 C 0.02 0.81 1.98 -52.93 -0.10 0.71 16 9 C -0.49 -25.06 5.70 25.60 0.15 -24.92 16 10 H 0.04 2.00 7.77 -2.91 -0.02 1.98 16 11 C 0.06 2.92 3.09 84.65 0.26 3.18 16 12 N -0.88 -42.07 9.77 21.45 0.21 -41.86 16 13 Si 0.91 39.57 23.98 68.60 1.64 41.22 16 14 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 15 H -0.27 -10.89 6.90 99.48 0.69 -10.20 16 16 H -0.26 -11.14 5.78 99.48 0.57 -10.57 16 17 C -0.20 -9.17 9.92 30.62 0.30 -8.86 16 18 C -0.21 -10.00 9.41 30.62 0.29 -9.71 16 19 S 2.60 84.66 5.87 -56.49 -0.33 84.33 16 20 C -0.66 -13.07 10.99 113.37 1.25 -11.82 16 21 O -0.99 -39.56 13.95 -127.65 -1.78 -41.34 16 22 O -0.97 -34.79 13.29 -118.49 -1.57 -36.36 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.05 1.78 4.12 -2.39 -0.01 1.77 16 25 H 0.05 1.95 7.59 -2.39 -0.02 1.93 16 26 H 0.37 12.98 7.92 -74.05 -0.59 12.39 16 27 H 0.08 2.38 7.86 -2.39 -0.02 2.36 16 28 H 0.09 3.32 6.14 -2.39 -0.01 3.30 16 29 H 0.05 2.02 7.68 -2.38 -0.02 2.00 16 30 H 0.12 5.25 5.23 -2.39 -0.01 5.24 16 31 H 0.27 12.16 8.32 -92.71 -0.77 11.39 16 32 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.11 5.08 5.35 -2.39 -0.01 5.07 16 36 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -62.04 288.61 -0.67 -62.71 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: 0.34 Total: 37.98 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 3.56 Total: -44.64 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -1.18 Total: -79.25 kcal Atomic # 8 Polarization: -97.64 SS G_CDS: -4.71 Total: -102.35 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.64 Total: 41.22 kcal Atomic # 16 Polarization: 84.66 SS G_CDS: -0.33 Total: 84.33 kcal Total: -62.04 -0.67 -62.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902716442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.747 kcal (2) G-P(sol) polarization free energy of solvation -62.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds